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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055203 ID=TCONS_00055203|Name=TCONS_00055203|organism=Clytia hemisphaerica|type=transcript|length=377bp
TGATAAGATTAGAGAAAGTAGGAAATATAACACTCCATATTACTGCTact
gttttttaataaaacagGCATGCAAAAGGGACAATAAAAAATGTGCTact
ttttatttatatattatGGTGTTGctttttgtgttttggttgGCGGTATT
GTTTGTGGCGGATGGTTTGGATATGAGCAACACCCCGGTGAAGCAGTTTT
TGCCACTGGAGTCTATATTATCTTTCATTTGTATGATGGAGTTTTCGCAT
CTTTTTGTCGCCACGAAACTGATTTAAAATGCAAACGATTGAAGGTCCTG
CAATGGCAGTTTTGTTTTGCTTTGCTTGGAACCCTTTGTATTGAGTCGTC
GATTATGAAATCTATTTTCGGAGCATG Run BLAST on NCBI transcript from alignment at scaffold_251:897530..910738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055203 ID=TCONS_00055203|Name=TCONS_00055203|organism=Clytia hemisphaerica|type=transcript|length=13209bp|location=Sequence derived from alignment at scaffold_251:897530..910738+ (Clytia hemisphaerica)
TGATAAGATTAGAGAAAGTAGGAAATATAACACTCCATATTACTGCTact
gttttttaataaaacagGCATGCAAAAGGGACAATAAAAAATGTGCTact
ttttatttatatattatGGTGTTGctttttgtgttttggttgGCGGTATT
GTTTGTGGCGGATGGTTTGGATATGAGCAACACCCCGGTGAAGCAGTTTT
TGCCACTGGAGTCTATATTATCTTTCATTTGTATGATGGAGTTTTCGCAT
CTTTTTGTCGCCACGAAACTGATTTAAAATGCAAACGATTGAAGGTCCTG
CAATGGCGTAAGTCTACATAAAATTTCCTGGTTAATCATTTTATTATTAT
AACGCTACTAAGAGTAAAGGTACCAGATGCAGCTTTAGATTCACTGCATT
GTttgggcccgggggggggcactcgatctgaaaacgaccatacgttcggc
ccaaaatttggcttctaaaatcggacccttacagggggggtttcatggtt
ggcggaggagcggaatcggcccttttttcggacggagtggcggaatttgg
cgaaaatttagacggaattacggaaattgNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccgggtgtccAAGGA
CCTTTAGTTCATTTTACACTTTTGAATTGATCATTCAGCAACATTATATC
GAAACGGCTAGAGCTACCATAGTGAAATGAATTCCTGTTTTAAACACAAT
TTATTGCTGCCATTTTGGATGGATGAGACTACCCTCCTTATTTATATATT
TAACAAAGGCGATCAGTTATTTGCCTTTTTGTGTCCTGGACCATTTCCGG
AGTgtttaaagccaattttctCAAACAGGAAACTTGCTTCTTATCCAATT
TGGAAACGAAAGATGTTTCGGGAACTTTCCCACCTTCCTGTTTGGGAAGT
ATTTCCCGTTAAACTAATACTCACCATTTCCGTATAATATTGCTGACTGG
TTGTGGATATAGGGTAGATTCATATAGGTAAATAAACTTCTTTTTCTCGG
TTTTAGAGTTTTGTTTTGCTTTGCTTGGAACCCTTTGTATTGAGTCGTCG
ATTATGAAATCTATTTTCGGAACATGGGCTGTGTTGTCATTCGGTCACAC
AGTTATTACAGCCATTATGCTATGTTGCAATGACGGTTTAAGATTAACTT
TTGGAGAAAGCTATGAAAGAAGGATTGCTTGggaaaacaaaattaaacaa
aacatACGAACAGCGCCTGAAGTTGTAACATATTGTGAAGTGACAGAACC
AAAACCGctctggaaattttggaaaacaaGAGAAGTCATTTGGAGAGAAA
ATGAGACTTTCAAATATAAACATTGGATTGATTTGAGCCATATTGATAAA
GTTTTGTTTAAGAATATTGGAAAGGAGcagaattttcagaagattGAATT
CGATATTCATTTTGATGATGAGGAAACAGAAAAATCATATCAACGACATG
TTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGGAATGGTGTGATC
GAAACAAAACGCATAATCAAAGTGGATGGAATCAACATTGACAGAGAGAT
TGTTATGAATCTAAGTTCCATTGGTTTTCTAGAAAAACAACCTTGGCTAT
TGTTTTTGTCTTTACCTGTCAGCATCCTAAGTATCTGTCGGAAGATCATC
GATTGGTTAATCATTAGAATGAATATTGAACCCTTTTTAAAGAAAGTGAC
CATCAGAAAAGTCGTTTCAAACAAAGATATCGAGGCCATATAAACCTCAC
TTGAACTTAACGTCAAGTATTTAGCTTCAGTAAATGACAAAAATATCGAC
TAACAAATTTGATGTAATTGTTCTCTTCTTTATTACCTGAATATTTTATC
ACTCCcttacttaaaggttttatttttacataagtgctcctgtttcatat
cagacacatattcaATATCAGGActgtgtctccctattgttatatcatgc
taataaaagcaaaaaattgtttttcttttcctcattctaaccaatcttgc
tccacatccatgtcaatccaGTGTTAAAAAGCTtgcgaattaaaattgat
gagtaagcaaacgatatcactcttacttAGAAACACAACCTTTAAGTTAA
GAAAATGTGGTTTACGTGATGAGGATTAGCTTTGTGGTCATTAAGTTCAT
GAATTATTAACGCATCTTTTACAATTTACTAACACAATAcaacgaaagaa
aaaatgactcttTCCACCTCccagaaatttggaaaaattctcCTTAGTCA
GCATAAATTGCATAACGGTGGAAGAGGAAGTGTGGATAGGTTTTGAAGTG
TGATGCTGGATAGCTAACAGTAATTGAAATAGTTTTTATGGattcaaaaa
ttattcaaattcaACGCAATTATGGTTGCCATACTGATTTAGCGCACTCT
ATGTGGTCTACTTTGAATATCATAAAAACTAATATCTATATAAGATTTTA
GCTCTAAGAcaatccaaaaatatataaacaatgCTTTGATTCTTCAGTTT
GATCACTTGAGACTTTTGATTCTGGCATTAGATTTTGAGATGTGGATGTT
TTTTTATCGTTTGTGTTGGCGATTTTGTTTCCATTTGTCTTCTAGGTCTA
AAAACGTTGTCAAAAGGTTTTACATCACAATTTATTAACAAATATCAAAA
GGATTAAAAGTTTTATCATGCCTATAAAAAACGTATTCGGTTATTGATGT
CAAACGTCGGTACGTCATCACAAAAGTAGTCAAGAAAAAGTTGAGCGtca
aaggggggggggcacttctatggtccgacccacggcatgtgccgccctta
taggtaggtttttcgagatcCTCAAAATGCACTATAAGGGTGTACTCTTG
ATAGATGTACTCATTACTATGGGCCACataaagagagagaaaaaaagatc
GTATTAAGATTTCTAATTTAGTTTATTACATTTCCTCCTTTCTCAGAGAC
TCTTTTTAAGCGATAAGCGCTCAGCTTTAGACTTCACATTGTAATATGGT
AGTTTTTTCAGTGCTGATATGAAAACACTGTAGTTTTCTGACCGAGATGA
ATTTGGATGGTATTTTTCATACTGAAAACGGTTTTCAGGcaataaaagaa
ttgaaaacatGATGTCAGGAAAAAATATCGAGTTTCAACATGTGATTGAG
TAAAAAAATGTTTGTGTATGTTATCGCCAAAATATAAGATAGTACggaac
tttttcctcagtggggatgaaaattcctattgaaatcccaatagggATAG
AAATTGAGTTGTCCCAAAGATAAAAAATCCAGATGGCtttggagtgtaat
ttttaaacattgaatttcgagtggggataaAATGAAGTTCATTTCCGCCA
GTGGGGTTGAATTTTCAGTGTATTTTCcaaccggggacgaaatttttggc
aaattttccaTTGGGATTCTGGCGTCCCACCGGCTCTGTGAGACAAAGgt
ctttatttcaaaaattagttttaaggttttattcAATAGCCCTTTTCAAT
ACTCCTTTGTTGCACaaatgtacgtctttaaaaaatgaatggaaaaacAG
AGACAACTAAAAATACAATTCTGTGAGCATACACTTGGAAACCTTTTGCT
CACAGTTGCATAGggtgtcctgaaaaaaagtataGAGTTGTACCACTTCT
acagaaagaaagttcttgtgtgtctttattcactaaatttgcaatgttta
tgaacgtcatattaattgtcatgagacatctttAATGGATAACTTTTACA
ATAaccaattctcaataactttaacgtcattaaaattgtagagaaagtta
attcttttaatcataatgactgttgtaaatACAATTACTTTGTTGGTATa
tatttcttacattttgttaaacacacgaaacaaccttctactcagaatca
tgttcgaacttGATACTTTTTTTCGAGACACCCCGTAGTTTGACTCACTC
tagttttcatttcttttattGCTGAAAATACAGCAGCAAGTCCTAGTACA
TGAACGGTGATTTAAAtaattcctattgaaattatattttaagaTTCTGA
ATACAGTAAAAATTCTTTTAGCTTTTTCATTTCCATCCTGTAGACTGAAT
CATATCACCTCtcacgttcttttataagatcattacaaattttttgaagc
cttcggatgttcttaactttttgaggtttaaaacaatatatatttcattt
tttatgaagacaaaaatatataagaacataaagctttaATGGCAAAAAAT
ATTATGAACATTTAGGTTTTCAGGgacacctgatttcttaggaaatcgaa
caaaaatactcactagaattgtgaaaataagaacattttttgactTACAT
GTGAAAAAGTTTAGAGCACCCGAGGGCTTCAATGATTTAGGatgttttta
caaaaaacatttgtttaacGTATGACATGATTCAGTGcagtaggaagcat
tttcatattggggggctGGAGTTTAGTGACACCACAAGGGCCagccatgg
tttggcccgaggggggaaattgtgaaaatttgagctctagattgctaaaa
aatgcactcaaaacatgcacataaaagacaaattaaaaaagaaaaaattt
gcattttgcaaaataactatttttgaaaaaattataggggggcatagccc
cctttgcccccccccccagttgctacggcccTGCatgggtagtacccccc
cccccgggttgaaaaaaaaaaaaaaatttgcattttgcaaaaaacatttt
ttgaaaaaaaatattggggggcatagcccccctttccccccccccccagt
tgctacggcactgcatgATTTATACTGCCTCACacggattgaaaaaaaaa
agagtcaGCATAAATTGTGATCTTTTTGCATTTCATAAAAAGAAATGTCT
ATATACACCATTTTGGTTTCAAggaaatcttaaaatatttcaatgatGTT
Tttagggttggtgtaatttaagatgcacgatctaacgatttacgattcac
gatgcgcgatccatgcatacagtatgctgattattcctaataattatcat
aaaacttaaattatataacataactctaaaacaatggcataatcttttct
cacttttgtttaccacggtaaatttgtgcaacaaaaaagaaatgagtAGG
Taatggaactacgaataattacgaccgtaaaattatgaaaaaaactaact
tacATAATCATACTGTTGATAATGGAAGCTACCTTGTAAacataatctta
caatagacgGATAGTGTAAGTAATcaatgcacaagaaatatttctgCTCT
CTCttaatcgaatataggaatttctttcttaaagcaaataaaagaatata
ttggcaaacaatatgttttgcgaaccgtaatgtacgaagcaaaaaactgG
TGCtttattatgagaaagaattttctttcggtaaacaattcccctattga
ttcaagttatgaaagagagagagagagagagagtacagaaggtgaatgca
cgtggttttcactttcttttaatctatgactgatttttaaatataatttg
tataatcttacataaatgatgttttcaaaaataattgagtttcagcgaat
gaaagtttgtaaattgcctaaatatttaaTCATAATTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATAATTtgcataattacgcatgaattaacatatt
ttatgcacggatcgcgaatcgtgcatcgtaaatcgttagatcgtgcatct
taaattacaccaacccatgTTTTTATACATAcataaaaaggagaaaatgg
AAGTGAGAAAATTTCTAATTACATATTATATAATTACTTTTTCGTTGTTG
GCGGGTGTTTTTTTTGGTAGTGGATTTGCATATGTATTTGGACATAATAT
GTACACCTCTGAAGGAGGTGTTGCCATTGGAGTGTATATTGTCTTCCAAT
TATTGGATGGAGCTTTTGCAGCTATTTGTCGTCACTCAAATGGCTTAAAA
CGTTTGCGTTTAATGGTTCTTCAATGGCGTAAGTAAAGATAAATCTCCCT
TATTTGATTAAAAATCTATTCATTTCGCCCTTCGAAGCAGAGGGGGTACG
AGATTTTTACGTCGAAATCTCGAATGGGGAGATGTCATCTTCAATTTTGG
AATCTTGGCAAAATAGCACATTGAGATCGAAATATCTTGAAGTAACTAAA
TCTTTTTTATACTGAATTTTGCaagtcttttttctttgtcctTTCTACAT
TAGAAGTTTGAATTTAATATAGGCTTTGTAtagtatcatttgatctttta
TGTATTCAAAATATCGGCACTTTCTTTTCTCTGATTTAGAATTTTGTTTG
GCTTTGCTTGGAATTCTTTTGCTGAAGTCGTTGATCTTGAAATCTATTTT
CGGAACATGGGCTGTGTTGTCATTCGGTCACACAGTTATTGCAGCCATTA
TGCTATATCGTGATGACGATTTAAGATTAAGTTTTGGAGGAAGGTATGGA
AGAAGGATTGCTTGGGAAAACAAAATCCAACAAAACATACGAACAGCGCC
TGAATTTGTAACATATTGTGAAGTGAGAGAACCAAAACCGatctggaaat
tttggaaaacaaGAAAAGTCATTTGGAGAGAAAATAAGACTTTCAAATAT
AAACATTGGATTGATTTGAGCCAGATTGATGAAGTTTCGATTGAGAATAT
TGGAAAGGAGCAGAATATTCAGAAGATTGAATTCGATATTCAATTTGATG
ATGAGGAAACAGAAAAATCATATCAACAACATGTTCAAAATCTTTTGGAC
GAGTTACCTGAAATGTGTCGGAATGGTGAGATCAAAACAAGACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGC
ACGCcatggcacgttggcacgctggcacgttggcacgccaaggcacgttg
gcacgcaggCACGCATGACACGTAGGCACGCTGACACGCATAGCACGCtg
gcacgcgatttagcagactctgtTTTAGCAGGGTGGCTAAATCCAAAATA
AACGCCCAAAGGAATACAAACAACAAAAACCCCATAAAGCAATGAATAAT
ACATTAATACATTACAGAcattttttgtcctttttgtgTGCCTATGTTAC
TTAAGCAATCCGTATAACAAATTATCTACCATTAAAATGCAATTACACAC
AGTAATTCTAATTAACAGAAACGCGTTGATTAGATTACAGAAAGTAGGAA
ATATAACACTGCATATTACTACAATTGTATTTTAGTAGACCAGGCACGCA
AAAGAGACAATAAAAATGGGAGACTCTTTATGTGGATATTATTATGttgc
tttttttgttttgggTATTCTTATTATGGGTGGCGGATTTTTTGGATATA
TCAACCACCCCGCTGAAGCAAGTGTTGCTACTGGAGTGTATATTGTCTTC
CATTTATTTGATGGAGTTTTTGCAGCTATTTGTCAAAATGATTTCGAATG
TAAACGTTTGAAGGTCTTGCAATGGCGTAAGTATACATAAAGTTTTATTG
TCATTACGCTCTACAAAAGTAAATGTACCAGATGCAGCTTTATATTCAAT
GCATTTTTTGGGCtcccaaaatatttatttttcattgtcaTCAAAAGCTA
TGTGTGTGATGCCAAGGAACTCAATCTGGTACCCAGAGCAACttacaaaa
ctttttaattttactgggAGGACTGGATTGGAGTTTGCAAAGACCTTTAG
TTCATTTGAATTGATCGAGACAGAATTATATCGAATTGGCTAGAGCTACC
ATACTTTAAATTAGTAACTATGGTCATGcccaaaaaagaaataaattccT
GATTAAACACATTTTATGACCGCCATTTTCGATTTTCCACTACGCATTTA
TTTCGGGGAAGTAACTGCCaaatcagtgaaaaaaaaatagacaaaaaagg
TATTAAGAAGAGTCTACTCTtcttacttatttatttaaccAGGGCGAACA
GTTATTTGCCTTTTCTCCAGGACCATTTCCCGAGTgtttaaagccaattt
tctCAAACAGGAAACTTGCTTCTTATCCAATTTGGAAACAAAAGATGTTT
CGGGATTTTttccaccttcccgttcgggaagtaTTTCCCGTTAAGCTAAT
ACTTACCATTTCTGTATAGTGTTGCTGACTGGTTGTCGATATAGAGCAGA
TTCATATAGGTAaataaaacttctttttctCCGTTTTAGAGTTTTGTTTT
GCTTTGCTTGGAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTT
CGGAGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055203-exon-scaffold_251-1491911889:897530..897836 | TCONS_00055203-exon-scaffold_251-1491911889:897530..897836 | Clytia hemisphaerica | exon |
| TCONS_00055203-exon-scaffold_251-1510915933:897530..897836 | TCONS_00055203-exon-scaffold_251-1510915933:897530..897836 | Clytia hemisphaerica | exon |
| TCONS_00055203-exon-scaffold_251-1575043694:897530..897836 | TCONS_00055203-exon-scaffold_251-1575043694:897530..897836 | Clytia hemisphaerica | exon |
| TCONS_00055203-exon-scaffold_251-1491911889:910669..910738 | TCONS_00055203-exon-scaffold_251-1491911889:910669..910738 | Clytia hemisphaerica | exon |
| TCONS_00055203-exon-scaffold_251-1510915933:910669..910738 | TCONS_00055203-exon-scaffold_251-1510915933:910669..910738 | Clytia hemisphaerica | exon |
| TCONS_00055203-exon-scaffold_251-1575043694:910669..910738 | TCONS_00055203-exon-scaffold_251-1575043694:910669..910738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:897530..910738 + |
Blast
The following BLAST results are available for this feature:
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