TCONS_00055204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055204
Unique NameTCONS_00055204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055204 ID=TCONS_00055204|Name=TCONS_00055204|organism=Clytia hemisphaerica|type=transcript|length=1184bp
GGAAATATAACACTCCATATTACTGCTactgttttttaataaaacagGCA
TGCAAAAGGGACAATAAAAAATGTGCTactttttatttatatattatGGT
GTTGctttttgtgttttggttgGCGGTATTGTTTGTGGCGGATGGTTTGG
ATATGAGCAACACCCCGGTGAAGCAGTTTTTGCCACTGGAGTCTATATTA
TCTTTCATTTGTATGATGGAGTTTTCGCATCTTTTTGTCGCCACGAAACT
GATTTAAAATGCAAACGATTGAAGGTCCTGCAATGGCAGTTTTGTTTTGC
TTTGCTTGGAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCG
GAACATGGGCTGTGTTGTCATTCGGTCACACAGTTATTACAGCCATTATG
CTATGTTGCAATGACGGTTTAAGATTAACTTTTGGAGAAAGCTATGAAAG
AAGGATTGCTTGggaaaacaaaattaaacaaaacatACGAACAGCGCCTG
AAGTTGTAACATATTGTGAAGTGACAGAACCAAAACCGctctggaaattt
tggaaaacaaGAGAAGTCATTTGGAGAGAAAATGAGACTTTCAAATATAA
ACATTGGATTGATTTGAGCCATATTGATAAAGTTTTGTTTAAGAATATTG
GAAAGGAGcagaattttcagaagattGAATTCGATATTCATTTTGATGAT
GAGGAAACAGAAAAATCATATCAACGACATGTTCAAAATCTTTTGGACGA
GTTACCTGAAATGTGTCGGAATGGTGTGATCGAAACAAAACGCATAATCA
AAGTGGATGGAATCAACATTGACAGAGAGATTGTTATGAATCTAAGTTCC
ATTGGTTTTCTAGAAAAACAACCTTGGCTATTGTTTTTGTCTTTACCTGT
CAGCATCCTAAGTATCTGTCGGAAGATCATCGATTGGTTAATCATTAGAA
TGAATATTGAACCCTTTTTAAAGAAAGTGACCATCAGAAAAGTCGTTTCA
AACAAAGATATCGAGGCCATATAAACCTCACTTGAACTTAACGTCAAGTA
TTTAGCTTCAGTAAATGACAAAAATATCGACTAACAAATTTGATGTAATT
GTTCTCTTCTTTATTACCTGAATATTTTATCACTCCcttacttaaaggtt
ttatttttacataagtgctcctgtttcatatcag
Run BLAST on NCBI

transcript from alignment at scaffold_251:897550..900682+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055204 ID=TCONS_00055204|Name=TCONS_00055204|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at scaffold_251:897550..900682+ (Clytia hemisphaerica)
GGAAATATAACACTCCATATTACTGCTactgttttttaataaaacagGCA
TGCAAAAGGGACAATAAAAAATGTGCTactttttatttatatattatGGT
GTTGctttttgtgttttggttgGCGGTATTGTTTGTGGCGGATGGTTTGG
ATATGAGCAACACCCCGGTGAAGCAGTTTTTGCCACTGGAGTCTATATTA
TCTTTCATTTGTATGATGGAGTTTTCGCATCTTTTTGTCGCCACGAAACT
GATTTAAAATGCAAACGATTGAAGGTCCTGCAATGGCGTAAGTCTACATA
AAATTTCCTGGTTAATCATTTTATTATTATAACGCTACTAAGAGTAAAGG
TACCAGATGCAGCTTTAGATTCACTGCATTGTttgggcccgggggggggc
actcgatctgaaaacgaccatacgttcggcccaaaatttggcttctaaaa
tcggacccttacagggggggtttcatggttggcggaggagcggaatcggc
ccttttttcggacggagtggcggaatttggcgaaaatttagacggaatta
cggaaattgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNccccccccccccgggtgtccAAGGACCTTTAGTTCATTTTACACT
TTTGAATTGATCATTCAGCAACATTATATCGAAACGGCTAGAGCTACCAT
AGTGAAATGAATTCCTGTTTTAAACACAATTTATTGCTGCCATTTTGGAT
GGATGAGACTACCCTCCTTATTTATATATTTAACAAAGGCGATCAGTTAT
TTGCCTTTTTGTGTCCTGGACCATTTCCGGAGTgtttaaagccaattttc
tCAAACAGGAAACTTGCTTCTTATCCAATTTGGAAACGAAAGATGTTTCG
GGAACTTTCCCACCTTCCTGTTTGGGAAGTATTTCCCGTTAAACTAATAC
TCACCATTTCCGTATAATATTGCTGACTGGTTGTGGATATAGGGTAGATT
CATATAGGTAAATAAACTTCTTTTTCTCGGTTTTAGAGTTTTGTTTTGCT
TTGCTTGGAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCGG
AACATGGGCTGTGTTGTCATTCGGTCACACAGTTATTACAGCCATTATGC
TATGTTGCAATGACGGTTTAAGATTAACTTTTGGAGAAAGCTATGAAAGA
AGGATTGCTTGggaaaacaaaattaaacaaaacatACGAACAGCGCCTGA
AGTTGTAACATATTGTGAAGTGACAGAACCAAAACCGctctggaaatttt
ggaaaacaaGAGAAGTCATTTGGAGAGAAAATGAGACTTTCAAATATAAA
CATTGGATTGATTTGAGCCATATTGATAAAGTTTTGTTTAAGAATATTGG
AAAGGAGcagaattttcagaagattGAATTCGATATTCATTTTGATGATG
AGGAAACAGAAAAATCATATCAACGACATGTTCAAAATCTTTTGGACGAG
TTACCTGAAATGTGTCGGAATGGTGTGATCGAAACAAAACGCATAATCAA
AGTGGATGGAATCAACATTGACAGAGAGATTGTTATGAATCTAAGTTCCA
TTGGTTTTCTAGAAAAACAACCTTGGCTATTGTTTTTGTCTTTACCTGTC
AGCATCCTAAGTATCTGTCGGAAGATCATCGATTGGTTAATCATTAGAAT
GAATATTGAACCCTTTTTAAAGAAAGTGACCATCAGAAAAGTCGTTTCAA
ACAAAGATATCGAGGCCATATAAACCTCACTTGAACTTAACGTCAAGTAT
TTAGCTTCAGTAAATGACAAAAATATCGACTAACAAATTTGATGTAATTG
TTCTCTTCTTTATTACCTGAATATTTTATCACTCCcttacttaaaggttt
tatttttacataagtgctcctgtttcatatcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034768XLOC_034768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055204-exon-scaffold_251-1491911889:897550..897836TCONS_00055204-exon-scaffold_251-1491911889:897550..897836Clytia hemisphaericaexon
TCONS_00055204-exon-scaffold_251-1510915933:897550..897836TCONS_00055204-exon-scaffold_251-1510915933:897550..897836Clytia hemisphaericaexon
TCONS_00055204-exon-scaffold_251-1575043694:897550..897836TCONS_00055204-exon-scaffold_251-1575043694:897550..897836Clytia hemisphaericaexon
TCONS_00055204-exon-scaffold_251-1491911889:899786..900682TCONS_00055204-exon-scaffold_251-1491911889:899786..900682Clytia hemisphaericaexon
TCONS_00055204-exon-scaffold_251-1510915933:899786..900682TCONS_00055204-exon-scaffold_251-1510915933:899786..900682Clytia hemisphaericaexon
TCONS_00055204-exon-scaffold_251-1575043694:899786..900682TCONS_00055204-exon-scaffold_251-1575043694:899786..900682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:897550..900682 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15091	1.95592	1.5993	0.44536	0.493264	0.228505	0.044653	1.19078	3.68166e-05	0.0257957	4.28018e-06	0	0.0072002	3.72708	6.50228e-05	0.000130587	4.2945e-06	4.98289e-06	2.63462	2.74722	0	0	0	0	0	0	0	0.0743115	0	0.136983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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