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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055205 ID=TCONS_00055205|Name=TCONS_00055205|organism=Clytia hemisphaerica|type=transcript|length=783bp
TAACACTCCATATTACTGCTactgttttttaataaaacagGCATGCAAAA
GGGACAATAAAAAATGTGCTactttttatttatatattatGGTGTTGctt
tttgtgttttggttgGCGGTATTGTTTGTGGCGGATGGTTTGGATATGAG
CAACACCCCGGTGAAGCAGTTTTTGCCACTGGAGTCTATATTATCTTTCA
TTTGTATGATGGAGTTTTCGCATCTTTTTGTCGCCACGAAACTGATTTAA
AATGCAAACGATTGAAGGTCCTGCAATGGCAGTTTTGTTTTGCTTTGCTT
GGAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCGGAACATG
GGCTGTGTTGTCATTCGGTCACACAGTTATTACAGCCATTATGCTATGTT
GCAATGACGGTTTAAGATTAACTTTTGGAGAAAGCTATGAAAGAAGGATT
GCTTGggaaaacaaaattaaacaaaacatACGAACAGCGCCTGAAGTTGT
AACATATTGTGAAGTGAGAGAACCAAAACCGatctggaaattttggaaaa
caaGAAAAGTCATTTGGAGAGAAAATAAGACTTTCAAATATAAACATTGG
ATTGATTTGAGCCAGATTGATGAAGTTTCGATTGAGAATATTGGAAAGGA
GCAGAATATTCAGAAGATTGAATTCGATATTCAATTTGATGATGAGGAAA
CAGAAAAATCATATCAACAACATGTTCAAAATCTTTTGGACGAGTTACCT
GAAATGTGTCGGAATGGTGAGATCAAAACAAGA Run BLAST on NCBI transcript from alignment at scaffold_251:897557..905721+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055205 ID=TCONS_00055205|Name=TCONS_00055205|organism=Clytia hemisphaerica|type=transcript|length=8165bp|location=Sequence derived from alignment at scaffold_251:897557..905721+ (Clytia hemisphaerica)
TAACACTCCATATTACTGCTactgttttttaataaaacagGCATGCAAAA
GGGACAATAAAAAATGTGCTactttttatttatatattatGGTGTTGctt
tttgtgttttggttgGCGGTATTGTTTGTGGCGGATGGTTTGGATATGAG
CAACACCCCGGTGAAGCAGTTTTTGCCACTGGAGTCTATATTATCTTTCA
TTTGTATGATGGAGTTTTCGCATCTTTTTGTCGCCACGAAACTGATTTAA
AATGCAAACGATTGAAGGTCCTGCAATGGCGTAAGTCTACATAAAATTTC
CTGGTTAATCATTTTATTATTATAACGCTACTAAGAGTAAAGGTACCAGA
TGCAGCTTTAGATTCACTGCATTGTttgggcccgggggggggcactcgat
ctgaaaacgaccatacgttcggcccaaaatttggcttctaaaatcggacc
cttacagggggggtttcatggttggcggaggagcggaatcggcccttttt
tcggacggagtggcggaatttggcgaaaatttagacggaattacggaaat
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcc
ccccccccccgggtgtccAAGGACCTTTAGTTCATTTTACACTTTTGAAT
TGATCATTCAGCAACATTATATCGAAACGGCTAGAGCTACCATAGTGAAA
TGAATTCCTGTTTTAAACACAATTTATTGCTGCCATTTTGGATGGATGAG
ACTACCCTCCTTATTTATATATTTAACAAAGGCGATCAGTTATTTGCCTT
TTTGTGTCCTGGACCATTTCCGGAGTgtttaaagccaattttctCAAACA
GGAAACTTGCTTCTTATCCAATTTGGAAACGAAAGATGTTTCGGGAACTT
TCCCACCTTCCTGTTTGGGAAGTATTTCCCGTTAAACTAATACTCACCAT
TTCCGTATAATATTGCTGACTGGTTGTGGATATAGGGTAGATTCATATAG
GTAAATAAACTTCTTTTTCTCGGTTTTAGAGTTTTGTTTTGCTTTGCTTG
GAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCGGAACATGG
GCTGTGTTGTCATTCGGTCACACAGTTATTACAGCCATTATGCTATGTTG
CAATGACGGTTTAAGATTAACTTTTGGAGAAAGCTATGAAAGAAGGATTG
CTTGggaaaacaaaattaaacaaaacatACGAACAGCGCCTGAAGTTGTA
ACATATTGTGAAGTGACAGAACCAAAACCGctctggaaattttggaaaac
aaGAGAAGTCATTTGGAGAGAAAATGAGACTTTCAAATATAAACATTGGA
TTGATTTGAGCCATATTGATAAAGTTTTGTTTAAGAATATTGGAAAGGAG
cagaattttcagaagattGAATTCGATATTCATTTTGATGATGAGGAAAC
AGAAAAATCATATCAACGACATGTTCAAAATCTTTTGGACGAGTTACCTG
AAATGTGTCGGAATGGTGTGATCGAAACAAAACGCATAATCAAAGTGGAT
GGAATCAACATTGACAGAGAGATTGTTATGAATCTAAGTTCCATTGGTTT
TCTAGAAAAACAACCTTGGCTATTGTTTTTGTCTTTACCTGTCAGCATCC
TAAGTATCTGTCGGAAGATCATCGATTGGTTAATCATTAGAATGAATATT
GAACCCTTTTTAAAGAAAGTGACCATCAGAAAAGTCGTTTCAAACAAAGA
TATCGAGGCCATATAAACCTCACTTGAACTTAACGTCAAGTATTTAGCTT
CAGTAAATGACAAAAATATCGACTAACAAATTTGATGTAATTGTTCTCTT
CTTTATTACCTGAATATTTTATCACTCCcttacttaaaggttttattttt
acataagtgctcctgtttcatatcagacacatattcaATATCAGGActgt
gtctccctattgttatatcatgctaataaaagcaaaaaattgtttttctt
ttcctcattctaaccaatcttgctccacatccatgtcaatccaGTGTTAA
AAAGCTtgcgaattaaaattgatgagtaagcaaacgatatcactcttact
tAGAAACACAACCTTTAAGTTAAGAAAATGTGGTTTACGTGATGAGGATT
AGCTTTGTGGTCATTAAGTTCATGAATTATTAACGCATCTTTTACAATTT
ACTAACACAATAcaacgaaagaaaaaatgactcttTCCACCTCccagaaa
tttggaaaaattctcCTTAGTCAGCATAAATTGCATAACGGTGGAAGAGG
AAGTGTGGATAGGTTTTGAAGTGTGATGCTGGATAGCTAACAGTAATTGA
AATAGTTTTTATGGattcaaaaattattcaaattcaACGCAATTATGGTT
GCCATACTGATTTAGCGCACTCTATGTGGTCTACTTTGAATATCATAAAA
ACTAATATCTATATAAGATTTTAGCTCTAAGAcaatccaaaaatatataa
acaatgCTTTGATTCTTCAGTTTGATCACTTGAGACTTTTGATTCTGGCA
TTAGATTTTGAGATGTGGATGTTTTTTTATCGTTTGTGTTGGCGATTTTG
TTTCCATTTGTCTTCTAGGTCTAAAAACGTTGTCAAAAGGTTTTACATCA
CAATTTATTAACAAATATCAAAAGGATTAAAAGTTTTATCATGCCTATAA
AAAACGTATTCGGTTATTGATGTCAAACGTCGGTACGTCATCACAAAAGT
AGTCAAGAAAAAGTTGAGCGtcaaaggggggggggcacttctatggtccg
acccacggcatgtgccgcccttataggtaggtttttcgagatcCTCAAAA
TGCACTATAAGGGTGTACTCTTGATAGATGTACTCATTACTATGGGCCAC
ataaagagagagaaaaaaagatcGTATTAAGATTTCTAATTTAGTTTATT
ACATTTCCTCCTTTCTCAGAGACTCTTTTTAAGCGATAAGCGCTCAGCTT
TAGACTTCACATTGTAATATGGTAGTTTTTTCAGTGCTGATATGAAAACA
CTGTAGTTTTCTGACCGAGATGAATTTGGATGGTATTTTTCATACTGAAA
ACGGTTTTCAGGcaataaaagaattgaaaacatGATGTCAGGAAAAAATA
TCGAGTTTCAACATGTGATTGAGTAAAAAAATGTTTGTGTATGTTATCGC
CAAAATATAAGATAGTACggaactttttcctcagtggggatgaaaattcc
tattgaaatcccaatagggATAGAAATTGAGTTGTCCCAAAGATAAAAAA
TCCAGATGGCtttggagtgtaatttttaaacattgaatttcgagtgggga
taaAATGAAGTTCATTTCCGCCAGTGGGGTTGAATTTTCAGTGTATTTTC
caaccggggacgaaatttttggcaaattttccaTTGGGATTCTGGCGTCC
CACCGGCTCTGTGAGACAAAGgtctttatttcaaaaattagttttaaggt
tttattcAATAGCCCTTTTCAATACTCCTTTGTTGCACaaatgtacgtct
ttaaaaaatgaatggaaaaacAGAGACAACTAAAAATACAATTCTGTGAG
CATACACTTGGAAACCTTTTGCTCACAGTTGCATAGggtgtcctgaaaaa
aagtataGAGTTGTACCACTTCTacagaaagaaagttcttgtgtgtcttt
attcactaaatttgcaatgtttatgaacgtcatattaattgtcatgagac
atctttAATGGATAACTTTTACAATAaccaattctcaataactttaacgt
cattaaaattgtagagaaagttaattcttttaatcataatgactgttgta
aatACAATTACTTTGTTGGTATatatttcttacattttgttaaacacacg
aaacaaccttctactcagaatcatgttcgaacttGATACTTTTTTTCGAG
ACACCCCGTAGTTTGACTCACTCtagttttcatttcttttattGCTGAAA
ATACAGCAGCAAGTCCTAGTACATGAACGGTGATTTAAAtaattcctatt
gaaattatattttaagaTTCTGAATACAGTAAAAATTCTTTTAGCTTTTT
CATTTCCATCCTGTAGACTGAATCATATCACCTCtcacgttcttttataa
gatcattacaaattttttgaagccttcggatgttcttaactttttgaggt
ttaaaacaatatatatttcattttttatgaagacaaaaatatataagaac
ataaagctttaATGGCAAAAAATATTATGAACATTTAGGTTTTCAGGgac
acctgatttcttaggaaatcgaacaaaaatactcactagaattgtgaaaa
taagaacattttttgactTACATGTGAAAAAGTTTAGAGCACCCGAGGGC
TTCAATGATTTAGGatgtttttacaaaaaacatttgtttaacGTATGACA
TGATTCAGTGcagtaggaagcattttcatattggggggctGGAGTTTAGT
GACACCACAAGGGCCagccatggtttggcccgaggggggaaattgtgaaa
atttgagctctagattgctaaaaaatgcactcaaaacatgcacataaaag
acaaattaaaaaagaaaaaatttgcattttgcaaaataactatttttgaa
aaaattataggggggcatagccccctttgcccccccccccagttgctacg
gcccTGCatgggtagtacccccccccccgggttgaaaaaaaaaaaaaaat
ttgcattttgcaaaaaacattttttgaaaaaaaatattggggggcatagc
ccccctttccccccccccccagttgctacggcactgcatgATTTATACTG
CCTCACacggattgaaaaaaaaaagagtcaGCATAAATTGTGATCTTTTT
GCATTTCATAAAAAGAAATGTCTATATACACCATTTTGGTTTCAAggaaa
tcttaaaatatttcaatgatGTTTttagggttggtgtaatttaagatgca
cgatctaacgatttacgattcacgatgcgcgatccatgcatacagtatgc
tgattattcctaataattatcataaaacttaaattatataacataactct
aaaacaatggcataatcttttctcacttttgtttaccacggtaaatttgt
gcaacaaaaaagaaatgagtAGGTaatggaactacgaataattacgaccg
taaaattatgaaaaaaactaacttacATAATCATACTGTTGATAATGGAA
GCTACCTTGTAAacataatcttacaatagacgGATAGTGTAAGTAATcaa
tgcacaagaaatatttctgCTCTCTCttaatcgaatataggaatttcttt
cttaaagcaaataaaagaatatattggcaaacaatatgttttgcgaaccg
taatgtacgaagcaaaaaactgGTGCtttattatgagaaagaattttctt
tcggtaaacaattcccctattgattcaagttatgaaagagagagagagag
agagagtacagaaggtgaatgcacgtggttttcactttcttttaatctat
gactgatttttaaatataatttgtataatcttacataaatgatgttttca
aaaataattgagtttcagcgaatgaaagtttgtaaattgcctaaatattt
aaTCATAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATTtgcat
aattacgcatgaattaacatattttatgcacggatcgcgaatcgtgcatc
gtaaatcgttagatcgtgcatcttaaattacaccaacccatgTTTTTATA
CATAcataaaaaggagaaaatggAAGTGAGAAAATTTCTAATTACATATT
ATATAATTACTTTTTCGTTGTTGGCGGGTGTTTTTTTTGGTAGTGGATTT
GCATATGTATTTGGACATAATATGTACACCTCTGAAGGAGGTGTTGCCAT
TGGAGTGTATATTGTCTTCCAATTATTGGATGGAGCTTTTGCAGCTATTT
GTCGTCACTCAAATGGCTTAAAACGTTTGCGTTTAATGGTTCTTCAATGG
CGTAAGTAAAGATAAATCTCCCTTATTTGATTAAAAATCTATTCATTTCG
CCCTTCGAAGCAGAGGGGGTACGAGATTTTTACGTCGAAATCTCGAATGG
GGAGATGTCATCTTCAATTTTGGAATCTTGGCAAAATAGCACATTGAGAT
CGAAATATCTTGAAGTAACTAAATCTTTTTTATACTGAATTTTGCaagtc
ttttttctttgtcctTTCTACATTAGAAGTTTGAATTTAATATAGGCTTT
GTAtagtatcatttgatcttttaTGTATTCAAAATATCGGCACTTTCTTT
TCTCTGATTTAGAATTTTGTTTGGCTTTGCTTGGAATTCTTTTGCTGAAG
TCGTTGATCTTGAAATCTATTTTCGGAACATGGGCTGTGTTGTCATTCGG
TCACACAGTTATTGCAGCCATTATGCTATATCGTGATGACGATTTAAGAT
TAAGTTTTGGAGGAAGGTATGGAAGAAGGATTGCTTGGGAAAACAAAATC
CAACAAAACATACGAACAGCGCCTGAATTTGTAACATATTGTGAAGTGAG
AGAACCAAAACCGatctggaaattttggaaaacaaGAAAAGTCATTTGGA
GAGAAAATAAGACTTTCAAATATAAACATTGGATTGATTTGAGCCAGATT
GATGAAGTTTCGATTGAGAATATTGGAAAGGAGCAGAATATTCAGAAGAT
TGAATTCGATATTCAATTTGATGATGAGGAAACAGAAAAATCATATCAAC
AACATGTTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGGAATGGT
GAGATCAAAACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055205-exon-scaffold_251-1491911889:897557..897836 | TCONS_00055205-exon-scaffold_251-1491911889:897557..897836 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1510915933:897557..897836 | TCONS_00055205-exon-scaffold_251-1510915933:897557..897836 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1575043694:897557..897836 | TCONS_00055205-exon-scaffold_251-1575043694:897557..897836 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1491911889:899786..900008 | TCONS_00055205-exon-scaffold_251-1491911889:899786..900008 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1510915933:899786..900008 | TCONS_00055205-exon-scaffold_251-1510915933:899786..900008 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1575043694:899786..900008 | TCONS_00055205-exon-scaffold_251-1575043694:899786..900008 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1491911889:905442..905721 | TCONS_00055205-exon-scaffold_251-1491911889:905442..905721 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1510915933:905442..905721 | TCONS_00055205-exon-scaffold_251-1510915933:905442..905721 | Clytia hemisphaerica | exon |
| TCONS_00055205-exon-scaffold_251-1575043694:905442..905721 | TCONS_00055205-exon-scaffold_251-1575043694:905442..905721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:897557..905721 + |
Blast
The following BLAST results are available for this feature:
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