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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055208 ID=TCONS_00055208|Name=TCONS_00055208|organism=Clytia hemisphaerica|type=transcript|length=624bp
gtttttattgaaagtagAAAAAGGATAAAAATGACAATCACAAGTGAAAA
TCCAACAACAACTCTAACTGGGTTTAATGAAATTTGGTACAAGATTTTCT
TGTATTGTTTGGGGTCCAATGTCTTCGTCCATGTCATTGCTGCTTTCATT
GCACTTCGGGCACTACACAAACACAAATATGGAAGATATCTACCAGTTGC
AataattttgattggttttttGTACCCTATTAGCGGTGGCTTTATCacaa
GTTGTTGTATTGCTTGGATTTATACAGCTGCTAATTACGCAATGGAAGTG
CAAATGTGCGCCATTTATGGTGTAGGGCAAACGTTTTTCTTGGTAGTTGT
ATCCTTTGTAAGGTTGTATGGAACATTGTAATAAACTTGTTGCTAATACA
GCAGCCAATGCAATACGGTGATGAAAGACATCTCAGAGATGAAACTTCCT
TCCTTGGCTACTGGGTCTCTTGTTTTGTTACAATCTGAATAATGGCGTgt
tatatatgtgaagaaattcaaagaatttttgtccaactatcttctttcag
gagatttgggtggcagagcagcatatgcatttcgtccttattagaactca
tcagcactgcatactgcaccctgg Run BLAST on NCBI protein sequence of TCONS_00055208-protein >TCONS_00055208-protein ID=TCONS_00055208-protein|Name=TCONS_00055208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
VFIESRKRIKMTITSENPTTTLTGFNEIWYKIFLYCLGSNVFVHVIAAFI
ALRALHKHKYGRYLPVAIILIGFLYPISGGFITSCCIAWIYTAANYAMEV
QMCAIYGVGQTFFLVVVSFVRLYGTL Run BLAST on NCBI transcript from alignment at scaffold_251:113709..115845- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055208 ID=TCONS_00055208|Name=TCONS_00055208|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at scaffold_251:113709..115845- (Clytia hemisphaerica)
GTTTTTATTGAAAGTAGAAAAAGGATAAAAATGACAATCACAAGTGAAAA
TCCAACAACAACTCTAACTGGGTTTAATGGTAAGAAACTTTAGCTTTTTT
ACACGTACTGCAATAAGATAAGAATAAGGCTGGGCTTAAAAAATTGTTGG
TTTGCCGTCACCCGACCCTAGATTTTGGAGGTGGGTCGGTCGGTCGGAAC
TTTTTTTTATTTTGGCGATTTATGAAATTTTCGTTCATGGAAGGGTTAAC
AGTTGTTTACATTTAGGTAATTTTGAATAAAAAACAGAAGTTCTAGCAGG
GAATTTACAATTCTTATGCTTGAGACAAACAAGATAGGAGTTTTGATTTT
TTATTGTTTAAAGTTTTTAAAGGAAAAAAAATCTTCTTTAAAATGGCAAT
AAAATTTTTTGGGTCGGCAGGTTTTGAGGTAGGGTTGGTCATGGTCGGTC
GGGTGACGGCAAACCAACAATTTTTTAATTGCAACCTAATATATCGATGA
ATAATGAACTTTTCAATTTTTAGCTTGTGAGTGATTCAAAATTTTTGATA
AAATTAAATTGCTTCATCTCTCTTAAATTCTTTTATTTTTAGTCAAATTC
TTTATCATCATTTTTAAAATAAGCAGAATTTCTCATTGCTCAATCAACAG
AACTAGTCGTCTCAAAATGATATTATTTGAGAAAAGAAACTTAACTTCAA
CTCACATATTTTAGAAATTTGGTACAAGATTTTCTTGTATTGTTTGGGGT
CCAATGTCTTCGTCCATGTCATTGCTGCTTTCATTGCACTTCGGGCACTA
CACAAACACAAATATGGAAGATATCTACCAGTTGCAATAATTTTGATTGG
TTTTTTGTACCCTATTAGCGGTGGCTTTATCACAAGTATGTAATTTTTTA
CATTTTTTCTACCAAGAGGTGTATAAGAATATGGAATGATTCTCCAATCA
ATTTAAAGTATCTGAAAATCAGATATATCAGTTACAGTATCTTTTCTGTC
CGTATGATTTTGAAGGGTTTCAATGACTGGCTCATTAAACTGCCACTATC
TAAGCATCTATTTAACAAAAGGACCACTGCCAGACCTGTCAACATTCTAA
AACAATATTAATTTGATGTCATGGTAATCATCAACATTTGGATTTGTAAA
ACGAGCAGTTGAGAACTGGTAGAGAACAGCTAGGACTAAGTCATGGTCAG
ATATTCTTCACAATCTGAAGGCCAACCTGAAACAAAACTTGAGCACTTCT
AGAGCCCGGTTTTATTTTCATTTGTACCCTAAATTGTTTTTGGATGTCAT
AATGTGAACTGCTTTTTGTGAGTTGGGTAATTATCAGGTTGTAGTCGCCA
AGTAGAGGAAAAACATACCGGTTGTTTCAAGTTTGAAGTGAGGTTGTTAG
AAAACTAAATGTTATAAATCTAAACTTTGTACCATCAGAAAGAGGAAAGT
CTAATTAAATTTTGAGCAAAACACTAAATAAAGGCTCCTTTTGATACTTT
TTAACACCCAAAGTTCCAGGGCCTTTCGAATGAATGTTTTAATTATCAAA
ATCAAAGAATCGTTAAAATAGAAAAGTGCTAGTCACAGCAATTAAAACTT
TGAACTGACTCTGCATCACAACAAAAACACGCTCTCTTCCTGAAACACCC
GGTATTAAAGAACTATGCATGCTGCCTACTAATTTGCAATTACATCTGGA
TGAAATACTGTAGGTAACTCTGGGTAACATTTTATGATAAACATTTATTG
CATTGCGTTTTAGGTTGTTGTATTGCTTGGATTTATACAGCTGCTAATTA
CGCAATGGAAGTGCAAATGTGCGCCATTTATGGTGTAGGGCAAACGTTTT
TCTTGGTAGTTGTATCCTTTGTAAGGTTGTATGGAACATTGTAATAAACT
TGTTGCTAATACAGCAGCCAATGCAATACGGTGATGAAAGACATCTCAGA
GATGAAACTTCCTTCCTTGGCTACTGGGTCTCTTGTTTTGTTACAATCTG
AATAATGGCGTGTTATATATGTGAAGAAATTCAAAGAATTTTTGTCCAAC
TATCTTCTTTCAGGAGATTTGGGTGGCAGAGCAGCATATGCATTTCGTCC
TTATTAGAACTCATCAGCACTGCATACTGCACCCTGG Coding sequence (CDS) from alignment at scaffold_251:113709..115845- >TCONS_00055208 ID=TCONS_00055208|Name=TCONS_00055208|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_251:113709..115845- (Clytia hemisphaerica)
GTTGTTGTATTGCTTGGATTTATACAGCTGCTAATTACGCAATGGAAGTG
CAAATGTGCGCCATTTATGGTGTAGGGCAAACGTTTTTCTTGGTAGTTGT
ATCCTTTGTAAGGTTGTATGGAACATTGTAAAAATTTGGTACAAGATTTT
CTTGTATTGTTTGGGGTCCAATGTCTTCGTCCATGTCATTGCTGCTTTCA
TTGCACTTCGGGCACTACACAAACACAAATATGGAAGATATCTACCAGTT
GCAATAATTTTGATTGGTTTTTTGTACCCTATTAGCGGTGGCTTTATCAC
AAGTTTTTATTGAAAGTAGAAAAAGGATAAAAATGACAATCACAAGTGAA
AATCCAACAACAACTCTAACTGGGTTTAATGGTTGTTGTATTGCTTGGAT
TTATACAGCTGCTAATTACGCAATGGAAGTGCAAATGTGCGCCATTTATG
GTGTAGGGCAAACGTTTTTCTTGGTAGTTGTATCCTTTGTAAGGTTGTAT
GGAACATTGTAAAAATTTGGTACAAGATTTTCTTGTATTGTTTGGGGTCC
AATGTCTTCGTCCATGTCATTGCTGCTTTCATTGCACTTCGGGCACTACA
CAAACACAAATATGGAAGATATCTACCAGTTGCAATAATTTTGATTGGTT
TTTTGTACCCTATTAGCGGTGGCTTTATCACAAGTTTTTATTGAAAGTAG
AAAAAGGATAAAAATGACAATCACAAGTGAAAATCCAACAACAACTCTAA
CTGGGTTTAATGGTTGTTGTATTGCTTGGATTTATACAGCTGCTAATTAC
GCAATGGAAGTGCAAATGTGCGCCATTTATGGTGTAGGGCAAACGTTTTT
CTTGGTAGTTGTATCCTTTGTAAGGTTGTATGGAACATTGTAAAAATTTG
GTACAAGATTTTCTTGTATTGTTTGGGGTCCAATGTCTTCGTCCATGTCA
TTGCTGCTTTCATTGCACTTCGGGCACTACACAAACACAAATATGGAAGA
TATCTACCAGTTGCAATAATTTTGATTGGTTTTTTGTACCCTATTAGCGG
TGGCTTTATCACAAGTTTTTATTGAAAGTAGAAAAAGGATAAAAATGACA
ATCACAAGTGAAAATCCAACAACAACTCTAACTGGGTTTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055208-exon-scaffold_251-1575043694:115767..115845 | TCONS_00055208-exon-scaffold_251-1575043694:115767..115845 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1575043694:114961..115131 | TCONS_00055208-exon-scaffold_251-1575043694:114961..115131 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1575043694:113709..114082 | TCONS_00055208-exon-scaffold_251-1575043694:113709..114082 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1510915933:115767..115845 | TCONS_00055208-exon-scaffold_251-1510915933:115767..115845 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1510915933:114961..115131 | TCONS_00055208-exon-scaffold_251-1510915933:114961..115131 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1510915933:113709..114082 | TCONS_00055208-exon-scaffold_251-1510915933:113709..114082 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1491911889:115767..115845 | TCONS_00055208-exon-scaffold_251-1491911889:115767..115845 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1491911889:114961..115131 | TCONS_00055208-exon-scaffold_251-1491911889:114961..115131 | Clytia hemisphaerica | exon |
| TCONS_00055208-exon-scaffold_251-1491911889:113709..114082 | TCONS_00055208-exon-scaffold_251-1491911889:113709..114082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:113709..115845 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR019334 | Transmembrane_pr_170 |
Blast
BLAST of TCONS_00055208 vs. Swiss-Prot (Human)
Match: T170A (Transmembrane protein 170A OS=Homo sapiens GN=TMEM170A PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-24 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 55 TTTLTGFNEIWYKIFLYCLGSNVFVHVIAAFIALRALHKHKYGRYLPVAIILIGFLYPISGGFITSCCIAWIYTAANYAMEVQMCAIYGVGQTFFLVVVSFVRLYGTL 378
+T+L F E+WY +FL+ L S++F HV A +AL L HKYGR++ V+I+L+G + PI+ G +TS IA +Y AA M G GQTF ++VVSF+R+ TL
Sbjct: 37 STSLCSFPEMWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVVSFLRILATL 144
The following BLAST results are available for this feature:
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