TCONS_00055211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055211
Unique NameTCONS_00055211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055211 ID=TCONS_00055211|Name=TCONS_00055211|organism=Clytia hemisphaerica|type=transcript|length=1189bp
ATTAAGAATAAAAGTGACAAAGCCAGGTGATGACAAAGAAATGCAAATGG
TGCCAATTAACGAACCATTGGAATTCCAATTAGATATTATAGATGCTCCA
AATACGGTCAAAACTTCTCCACAAAATTGTTATGCAACCAGAGCTGATGG
TTCTGGAAGATATAATTTGATTACAGACAGatgtGAGGATGACGAGACAA
CTGCTATCACCTCCTCAAAAACTGCAATCCATCGGTTCTCATGGGAAATG
TTAGCTTTCAGATATTTTGGAAACTCTAATGCAGTCATCATCGTATGTGA
AgttttgatttgcaaaaatgaagattttgccGATTTAAGCGGAGAATGCA
AAAGATGTGGTCAgacttcaaaaagaaaaaaaagagctGTCAGTGATTCA
ATGGTTCTTGAGAAAACAACAATCTCCAGTCAACCTATTTTTATCATCAA
CCTTCCAGACAAGCCAGGACAATTACCAGCACAAAAGGATGAAGGATTTT
TGAGAACACCAGTAGGAATTTCAGTGATTGCTGTTTTAGGAGTAATCATT
CTCGCCCTGAGCGCTTTCATTGTGAAGAAAAAGATGGTTGCTACCTCCTC
ACATTTGATGAAGAAAACTTTAGAAGTTGAaggaaatgttgaaaaaggAG
TTGACAACATGGCCATGGAAGTGATCAGAAACTGATCATGAATAACGGTT
GAGGATTCATGTCTCATAGAAAAAATCCTCTTATTAATTAAGAAACGTAT
TAGCATTTAATCTACTGCACTTATATTTAGGTTTTTAACCCTTAGACTCC
Atgagacgcgttttcgcgtcctgaaacagccaaaataccaagtcccaaag
gttgggtcccaggtccctaggacttgatttaaaggggcataaaccgaatg
ctttttgaaagagtacaaaattaccattccaatggtaccaaaacgagtgt
ctaaatcaaaagctacaagcttttacgccattttgaattttgaagtttta
aaaaaaaaatcattgaaatttttcaactttttcaaaactactgcgcgctc
aaagggttaactaaattttttaaaatttttttcgaagactccaaactgct
caaaatgactgaaaatgacaaataggagtgatttgaagttgttttgacca
taaaaaatttttatcaggggtctcattaacccttagacN
Run BLAST on NCBI

protein sequence of TCONS_00055211-protein

>TCONS_00055211-protein ID=TCONS_00055211-protein|Name=TCONS_00055211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
LRIKVTKPGDDKEMQMVPINEPLEFQLDIIDAPNTVKTSPQNCYATRADG
SGRYNLITDRCEDDETTAITSSKTAIHRFSWEMLAFRYFGNSNAVIIVCE
VLICKNEDFADLSGECKRCGQTSKRKKRAVSDSMVLEKTTISSQPIFIIN
LPDKPGQLPAQKDEGFLRTPVGISVIAVLGVIILALSAFIVKKKMVATSS
HLMKKTLEVEGNVEKGVDNMAMEVIRN
Run BLAST on NCBI

transcript from alignment at scaffold_251:205157..207773-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055211 ID=TCONS_00055211|Name=TCONS_00055211|organism=Clytia hemisphaerica|type=transcript|length=2617bp|location=Sequence derived from alignment at scaffold_251:205157..207773- (Clytia hemisphaerica)
ATTAAGAATAAAAGTGACAAAGCCAGGTGATGACAAAGAAATGCAAATGG
TGCCAATTAACGAACCATTGGAATTCCAATTAGATATTATAGATGCTCCA
AATACGGTCAAAACTTCTCCACAAAATTGTTATGCAACCAGAGCTGATGG
TTCTGGAAGATATAATTTGATTACAGACAGGTTAGGCATTTCAAAAAGGG
TATTTCAAATGAGCAATCGTTCGTAATTATTCCAAAGAACTGATAGTATA
TATACAGGGTGTCCCTAATTAAAGTATCGAGTCGAAACACAACTATGAGT
AGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGGAGAACGTTCT
TATATTTTAGCGATAACACACACAAACTTTTCTACTCAATCGCATGTTCA
AACTCGATACTTTAATTAGGGACACCCTGTAATGTCTCATCCCCAAAACA
GGGCAACAAAAACATTTTATACCTTAAATCCTTCACCTTATAAACTAGAT
TTTTCATGGATTAAGTAAAATGTTTTAATCAGTAGAACAAAAATAGAACA
CAGATTTTCATGTTTTGATTGATTCAGAAATCTCGAGTGAGTAATTTTTT
TTTCCCATGATGTGCCCTGTGCTGTGAATTTCACAATTCCCTCTCCAAAG
AATAAAAAAGAAATCTCTCTTGAAAACATAATATTATTACTGTTTTTTTC
TTCCTACGAGTCATCTTGTTCAAAGATTTAGCCACCCTAACCCTTTCCGT
GCCCAAGGGGAGAAAATGACAAAAGAATTGACGAAAATTTTAGAGGCGAT
GCAGTTGTTACGACGGGAGAAAATGAAAACAGTATTTTGAGCAGTCGATG
GCATGTATATTTGTCATAACCAGTTGTTGGCCACCTGGCCCAATTTCAAA
TATACTTGACATGGACCAATCAAAAAACTTCCGCAATGTCAAATATATGC
CATCGGCTGCTCAAAATGTTTTTGCGATGTCAAATGTACTGGATTTGGGT
ACGGAGAGGACTAAGGTCGGTTCTCAGAGGACCGGGCTTGTACCCCGATC
AGCTCTCGGAACTCAGATCGACTTTACGTTATATTTTTTTTCAGATGTGA
GGATGACGAGACAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGGT
TCTCATGGGAAATGTTAGCTTTCAGATATTTTGGAAACTCTAATGCAGTC
ATCATCGTATGTGAAGTTTTGATTTGCAAAAATGAAGATTTTGCCGATTT
AAGCGGAGAATGCAAAAGATGTGGTCAGACTTCAAAAAGAAAAAAAAGAG
CTGTCAGTGATTCAATGGTTCTTGAGAAAACAACAATCTCCAGTCAACCT
ATTTTTATCATCAACCTTCCAGACAAGCCAGGTCAGAACTTTTGGTTTAG
GTCCTTGTCATACTGAATGATATGTCTCCCAATTTGGAGTCCAAGCTCTG
GAGCTTTCTAGTAAAAGAAATGTCTTCGACTGTCAACCTGGCAACAGAAT
CTACTCCAGCTGCTTCCCGTAATGGTGTGATTCGGGGATTCTTTACGATT
GATGAGCCCTTGATATGTAAATATGATTAATGTAGATTTTCACTTATCGC
AAATCTTACACAAATTTCATGACTGGCTGATATTTGCTAGATCCTCCTCT
TGGCGGTATAAAGCGGGATGAAACTTTGAGCTTTTAATATTTTAGGACAA
TTACCAGCACAAAAGGATGAAGGATTTTTGAGAACACCAGTAGGAATTTC
AGTGATTGCTGTTTTAGGAGTAATCATTCTCGCCCTGAGCGCTTTCATTG
TGAAGAAAAAGATGGTTGCTACCTCCTCACATTTGATGAAGAAAACTTTA
GAAGTTGAAGGAAATGTTGAAAAAGGAGTTGACAACATGGCCATGGAAGT
GATCAGAAACTGATCATGAATAACGGTTGAGGATTCATGTCTCATAGAAA
AAATCCTCTTATTAATTAAGAAACGTATTAGCATTTAATCTACTGCACTT
ATATTTAGGTTTTTAACCCTTAGACTCCATGAGACGCGTTTTCGCGTCCT
GAAACAGCCAAAATACCAAGTCCCAAAGGTTGGGTCCCAGGTCCCTAGGA
CTTGATTTAAAGGGGCATAAACCGAATGCTTTTTGAAAGAGTACAAAATT
ACCATTCCAATGGTACCAAAACGAGTGTCTAAATCAAAAGCTACAAGCTT
TTACGCCATTTTGAATTTTGAAGTTTTAAAAAAAAAATCATTGAAATTTT
TCAACTTTTTCAAAACTACTGCGCGCTCAAAGGGTTAACTAAATTTTTTA
AAATTTTTTTCGAAGACTCCAAACTGCTCAAAATGACTGAAAATGACAAA
TAGGAGTGATTTGAAGTTGTTTTGACCATAAAAAATTTTTATCAGGGGTC
TCATTAACCCTTAGACN

Coding sequence (CDS) from alignment at scaffold_251:205157..207773-

>TCONS_00055211 ID=TCONS_00055211|Name=TCONS_00055211|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_251:205157..207773- (Clytia hemisphaerica)
GACAATTACCAGCACAAAAGGATGAAGGATTTTTGAGAACACCAGTAGGA
ATTTCAGTGATTGCTGTTTTAGGAGTAATCATTCTCGCCCTGAGCGCTTT
CATTGTGAAGAAAAAGATGGTTGCTACCTCCTCACATTTGATGAAGAAAA
CTTTAGAAGTTGAAGGAAATGTTGAAAAAGGAGTTGACAACATGGCCATG
GAAGTGATCAGAAACTGAATGTGAGGATGACGAGACAACTGCTATCACCT
CCTCAAAAACTGCAATCCATCGGTTCTCATGGGAAATGTTAGCTTTCAGA
TATTTTGGAAACTCTAATGCAGTCATCATCGTATGTGAAGTTTTGATTTG
CAAAAATGAAGATTTTGCCGATTTAAGCGGAGAATGCAAAAGATGTGGTC
AGACTTCAAAAAGAAAAAAAAGAGCTGTCAGTGATTCAATGGTTCTTGAG
AAAACAACAATCTCCAGTCAACCTATTTTTATCATCAACCTTCCAGACAA
GCCAGTTAAGAATAAAAGTGACAAAGCCAGGTGATGACAAAGAAATGCAA
ATGGTGCCAATTAACGAACCATTGGAATTCCAATTAGATATTATAGATGC
TCCAAATACGGTCAAAACTTCTCCACAAAATTGTTATGCAACCAGAGCTG
ATGGTTCTGGAAGATATAATTTGATTACAGACAGGACAATTACCAGCACA
AAAGGATGAAGGATTTTTGAGAACACCAGTAGGAATTTCAGTGATTGCTG
TTTTAGGAGTAATCATTCTCGCCCTGAGCGCTTTCATTGTGAAGAAAAAG
ATGGTTGCTACCTCCTCACATTTGATGAAGAAAACTTTAGAAGTTGAAGG
AAATGTTGAAAAAGGAGTTGACAACATGGCCATGGAAGTGATCAGAAACT
GAATGTGAGGATGACGAGACAACTGCTATCACCTCCTCAAAAACTGCAAT
CCATCGGTTCTCATGGGAAATGTTAGCTTTCAGATATTTTGGAAACTCTA
ATGCAGTCATCATCGTATGTGAAGTTTTGATTTGCAAAAATGAAGATTTT
GCCGATTTAAGCGGAGAATGCAAAAGATGTGGTCAGACTTCAAAAAGAAA
AAAAAGAGCTGTCAGTGATTCAATGGTTCTTGAGAAAACAACAATCTCCA
GTCAACCTATTTTTATCATCAACCTTCCAGACAAGCCAGTTAAGAATAAA
AGTGACAAAGCCAGGTGATGACAAAGAAATGCAAATGGTGCCAATTAACG
AACCATTGGAATTCCAATTAGATATTATAGATGCTCCAAATACGGTCAAA
ACTTCTCCACAAAATTGTTATGCAACCAGAGCTGATGGTTCTGGAAGATA
TAATTTGATTACAGACAGGACAATTACCAGCACAAAAGGATGAAGGATTT
TTGAGAACACCAGTAGGAATTTCAGTGATTGCTGTTTTAGGAGTAATCAT
TCTCGCCCTGAGCGCTTTCATTGTGAAGAAAAAGATGGTTGCTACCTCCT
CACATTTGATGAAGAAAACTTTAGAAGTTGAAGGAAATGTTGAAAAAGGA
GTTGACAACATGGCCATGGAAGTGATCAGAAACTGAATGTGAGGATGACG
AGACAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGGTTCTCATGG
GAAATGTTAGCTTTCAGATATTTTGGAAACTCTAATGCAGTCATCATCGT
ATGTGAAGTTTTGATTTGCAAAAATGAAGATTTTGCCGATTTAAGCGGAG
AATGCAAAAGATGTGGTCAGACTTCAAAAAGAAAAAAAAGAGCTGTCAGT
GATTCAATGGTTCTTGAGAAAACAACAATCTCCAGTCAACCTATTTTTAT
CATCAACCTTCCAGACAAGCCAGTTAAGAATAAAAGTGACAAAGCCAGGT
GATGACAAAGAAATGCAAATGGTGCCAATTAACGAACCATTGGAATTCCA
ATTAGATATTATAGATGCTCCAAATACGGTCAAAACTTCTCCACAAAATT
GTTATGCAACCAGAGCTGATGGTTCTGGAAGATATAATTTGATTACAGAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034771XLOC_034771Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055211-proteinTCONS_00055211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055211-exon-scaffold_251-1575043694:207594..207773TCONS_00055211-exon-scaffold_251-1575043694:207594..207773Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1575043694:206193..206479TCONS_00055211-exon-scaffold_251-1575043694:206193..206479Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1575043694:205157..205878TCONS_00055211-exon-scaffold_251-1575043694:205157..205878Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1510915933:207594..207773TCONS_00055211-exon-scaffold_251-1510915933:207594..207773Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1510915933:206193..206479TCONS_00055211-exon-scaffold_251-1510915933:206193..206479Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1510915933:205157..205878TCONS_00055211-exon-scaffold_251-1510915933:205157..205878Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1491911889:207594..207773TCONS_00055211-exon-scaffold_251-1491911889:207594..207773Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1491911889:206193..206479TCONS_00055211-exon-scaffold_251-1491911889:206193..206479Clytia hemisphaericaexon
TCONS_00055211-exon-scaffold_251-1491911889:205157..205878TCONS_00055211-exon-scaffold_251-1491911889:205157..205878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:205157..207773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.151708	0	0	0	0	0	0	0.228217	0.821864	0.254819	0.201507	1.93539	1.71847	0.199794	0.338958	0.0961481	0.192427	4.26702	4.63242	0.800627	0.872329	6.12405	7.62252	0.147234	0	1.62158	0.918757	0.150296	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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