|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055213 ID=TCONS_00055213|Name=TCONS_00055213|organism=Clytia hemisphaerica|type=transcript|length=6614bpRun BLAST on NCBI protein sequence of TCONS_00055213-protein >TCONS_00055213-protein ID=TCONS_00055213-protein|Name=TCONS_00055213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2204bp SSKALNRCQHKCMNNMGSFTCACNKGYKLLPDGKSCQDINECSTLNGGCNRun BLAST on NCBI transcript from alignment at scaffold_251:209617..223906- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055213 ID=TCONS_00055213|Name=TCONS_00055213|organism=Clytia hemisphaerica|type=transcript|length=14290bp|location=Sequence derived from alignment at scaffold_251:209617..223906- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_251:209617..223906- >TCONS_00055213 ID=TCONS_00055213|Name=TCONS_00055213|organism=Clytia hemisphaerica|type=CDS|length=85956bp|location=Sequence derived from alignment at scaffold_251:209617..223906- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055213 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 151.754 bits (382), Expect = 1.202e-36 Identity = 120/423 (28.37%), Postives = 191/423 (45.15%), Query Frame = 1
Query: 22 CQHKCMNNMGSFTCACNKGYKLLPDGKSCQDINECSTLNGGCNQICTNRPGSFQCSCRRGFRLSSDGKTCKDINECSEQKP-CDNNNGICKNTFGSYRCSCKVGYQLLSNKKTCKDINECSKKELNGCQHKCSNTVGSFVCSCIFGYRLNADKKKCDDINECIEQTDKCGHNCHNTIGLYTCSCRPGYRLNGDKVSCKALPCVTVSSLNHGNISCTGYVTDQSCSYECHSGFDLLGSGQRTCLPSSQWSGNAPQCQRKDCPTIEAPEHGSIMIPCVAKYGFKCLKKCSKGFFLDGTISAKCVMEGNQTSWTAKDSICRASTPCEPNPCLNNGQCLETSIDTFVCDCSGTLY------KGKLCDIGIVDIPTLPQLVLNQWSTDIEIMARPTAFVNIVPKSRVELTFDPPEIRIEVPETSAKFQ 1269
C+H+C+N GS+ C C++G+ L PD K+C I+ C++ N GC C N S+ C C +GF L+ D KTC+ IN C+ KP C++ C N SY C C GY L N KTC ++ C++++ +GC+ C NT SFVC C G+ +N D K C ++ C+ C ++C N + C C G+ L D +C L SC + D C + C S D S C + C+RKD +A +HG I + + C +C +GF L + +C+++ + C+NNG ++++C CS + K C G +D+ + + + E++ + FV + S LT P R+ + + S +
Sbjct: 331 CEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHE---CVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQD-HGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLD------------SCA--LGDHGCEHSCVSSED---SFVCQCFEGYILREDGKTCRRKD--VCQAIDHGCEHICVNSDDSYTC--ECLEGFRL-----------AEDGKRCRRKDVCKSTHHGCEHICVNNG-------NSYICKCSEGFVLAEDGRRCKKCTEGPIDLVFVIDGSKSLGEENFEVVKQ---FVTGIIDS---LTISPKAARVGLLQYSTQVH 704 HSP 2 Score: 143.28 bits (360), Expect = 4.214e-34 Identity = 80/199 (40.20%), Postives = 108/199 (54.27%), Query Frame = 1
Query: 16 NRCQHKCMNNMGSFTCACNKGYKLLPDGKSCQDINECSTLNGGCNQICTNRPGSFQCSCRRGFRLSSDGKTCKDINEC-SEQKPCDNNNGICKNTFGSYRCSCKVGYQLLSNKKTCKDINECSKKELNGCQHKCSNTVGSFVCSCIFGYRLNADKKKCDDINECIEQTDKCGHNCHNTIGLYTCSCRPGYRLNGDKVSC 609
+ C H C+N GS+ C C +GY L D +C+ + C+ + C Q+C N PGSF C C G+ L+ DGK C ++ C SE C++ C N GSY C C G+ L +KKTC I+ C+ +GCQH+C NT S+ C C+ G+ LN DKK C IN C C H C N Y C C GY L+ + +C
Sbjct: 247 HNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHE---CVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSN-HGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTC 441 HSP 3 Score: 124.02 bits (310), Expect = 4.535e-28 Identity = 86/260 (33.08%), Postives = 127/260 (48.85%), Query Frame = 1
Query: 124 CSTLNGGCNQICTNRPGSFQCSCRRGFRLSSDGKTCKDINECS-EQKPCDNNNGICKNTFGSYRCSCKVGYQLLSNKKTCKDINECSKKELNGCQHKCSNTVGSFVCSCIFGYRLNADKKKCDDINECIEQTDKCGHNCHNTIGLYTCSCRPGYRLNGDKVSCKALPCVTVSSLNHGNISCTGYVTDQSCSYECHSGFDLLGSGQRTCLPSSQWSGNAPQCQRKDCPTIEAPEHGSIMIPCVAKYGFKCLKKCSKGFFLD 900
CSTL C C N PGS+ C C++G+ L+SD TC+ + C+ E C+ +C N GS+ C C GY L + K C ++ C+ E +GC+H+C N GS++C C G+ LN DKK C I+ C C H C NT Y+C C G+ LN DK +C+ + +LN ++S CH G+ L +G +TC C ++D HG + + F C +CS+GF ++
Sbjct: 242 CSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQ---LCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCAS-ENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRR---INYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNG-KTC-------SRVDHCAQQD--------HGCEQLCLNTEDSFVC--QCSEGFLIN 476 The following BLAST results are available for this feature:
BLAST of TCONS_00055213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.