TCONS_00055214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055214
Unique NameTCONS_00055214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055214 ID=TCONS_00055214|Name=TCONS_00055214|organism=Clytia hemisphaerica|type=transcript|length=831bp
TTTATCAGCAACGTAACATTCGATGATTAACGCAGCAAAATGCATGTTTC
CCTCATATTTCATCGTCAAATCTTCATGTTGTTTGGAAAGTGATCGACGT
TGAGTCAATTTATAAGTCTAGCATGAATTATATATATACTGACAAACTGC
TTGAAATAATTCACCAATTGGGGCCCCATGACTGAAAGTCTTCACCAACA
CATACAAAATGCATGATAACTAATCTTGTTATAGAGCTAATGTTTGCGCT
GCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAGTCGAGAATTGG
CTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGGTCTTTGTTATG
GCAGGTGCACTCGCTCAAGTCAAATTACAGTATATTACACCACTGCTGAA
GTGCGATACAAACAGGGTTATCGATACTTCTGCTGCTCTGGATGGGCGAG
ACAAGGTGATGGCTGTCCTACACCCATTTGTAACCCTGGTTGTGTAAATG
GACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGA
AACAGATGCAAAAAAGATATTGATGAATGTTTGAGAAAACCTTGCGAACA
AACTTGCAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAGCAGGAT
ATAAGAAAATCAACAATGATTCAAAATCTCGCCAGTGTGTCAATGTCGAA
GAATGTTTGACAACACCATGCAAATGCGCTCAACCGAAGAATTGCAAAGC
CACGTGTACTGATACCACAGGGAGCTTCAAATGTTCTTGTAACAAAGGAT
TTAAACTTGGAACTGACCAAAGAACTTGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_251:224239..226886-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055214 ID=TCONS_00055214|Name=TCONS_00055214|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at scaffold_251:224239..226886- (Clytia hemisphaerica)
TTTATCAGCAACGTAACATTCGATGATTAACGCAGCAAAATGCATGTTTC
CCTCATATTTCATCGTCAAATCTTCATGTTGTTTGGAAAGTGATCGACGT
TGAGTCAATTTATAAGTCTAGCATGAATTATATATATACTGACAAACTGC
TTGAAATAATTCACCAATTGGGGCCCCATGACTGAAAGTCTTCACCAACA
CATACAAAATGCATGATAACTAATCTTGTTATAGAGCTAATGTTTGCGCT
GCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAGTCGAGAATTGG
CTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGGTCTTTGTTATG
GCAGGTGCACTCGCTCAAGGTAATCACTATTTCCATATTCTCATAGGCCA
AATGTTTGTTCAGCTACCATTAAACTACGTATTATATTATGTGTCTGTCC
GAAAATCGAGGATTGGTTATCAAAATTATCGGACATGTTGCAAAAGGTTT
TTGGGAGCAGGTGAACTCGCTCGAGGTAAGTTTCTAATTTATATTTATAT
TATGAAATTACGGCGAGAGGAACCTTCACAAAATTACTTATAGATAGCAC
ATAATATATGAAGTAAAAATTAACTTCAATGCATACTTTTACACCTTCAC
GTGTGTCTCGTTTAAAACACATATATTTTTTCTTCCAGTCAAATTACAGT
ATATTACACCACTGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCT
GCTGCTCTGGATGGGCGAGACAAGGTGATGGCTGTCCTACACGTGAGTTT
TCTAAATCAAGAATCCTCGCTGTTTTTTACCAAATCTTCGAAAAAACTCC
CTGAGTATGTATATATGTATCTTAAGGTATTTAATATGTTATAAGCTTAT
AGCGTTTGATATACAATGGAGTCTCGATAACTTAAACACTCACGGGCGGG
GATTATAGATTTGTTCGCGTTGAGGAAATTTTGAGCTTTGGAGTAAGGTT
TATAAGGCATTATTAATTGGGCTTTTCCAGAAAAAAACCATATACCCCCT
GTTTCGGAGGTCCATCCCTCTGTGGCTGGAAATGCTGTAACCCCCTGGAA
TTCCAGGCACTTTCAGGTTTAAACCCTCCGGAATTCTGAATTTTAGTAGG
ATTTAAAAAGCTACCCCCAAGGAATTCCAGTTATTTTTGACAGATTTTTG
TATCTCCCTATGGAATTCCACCACATATCAAACCTTACCCCTTGGAACGG
AAATGGACCTCCTCAACAGAGGGTATACGGTTTTTTTTCTGGAAAAGCCC
ATTGAAGGAACCATAAAACTAGTTCAAGTTAAGGAGGCATTCGAGTTAAA
GAGGTTCGAGCTAAAGATACTCCACTGTATTTGACTTTAAAGTTCGTGTC
ACGTGGAAACGAATCTCGGAATCTTAATTGGAATTATTGCGTAAGTTTTA
TCACACATAAGACTTTTTAAGAAAGACAAATGAATGAGGAATCTTAGCTG
TTTTATTCTTCATTTTAGCCATTTGTAACCCTGGTTGTGTAAATGGACAT
TGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGAAACAG
ATGCAAAAAAGGTCGATAATTCCACTACTTTTTACATAAACTCTTTTATT
CATTCTTGTGCATCACCTATCAAATATTCAGAAATGATTTTCAAAACTTA
CGAATACCAACGCTATGTCTAATCGCGATAAATTTCCCATCCAATAATCT
CTCTCACAAGGAGATTTAGAAATTTTCGAAATTTGGTGAGACAGGGGTGT
TAAAATTCGGTGAGACAGGGGTGTTGAAGTTTGGTGAGACAGGGGTGTTT
AAATTTGGCGAAACAGGGGTGTTGAAATTGATGAGACAGGTTTATTTTGG
AGAGTACGACAATTAACAGGCCAGAGCCATGCTATAATTTTATCATATAA
TTTTTCTTACAGATATTGATGAATGTTTGAGAAAACCTTGCGAACAAACT
TGCAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAGCAGGATATAA
GAAAATCAACAATGATTCAAAATCTCGCCAGTGTGTCAGTAAGTCGTTTT
TTTTTTTAAATGATTGTATGAATGTGTTAAGCTTTTTTTCATTTGACGCC
ATAGTGGCGGTTGGTAGATAACACCCAGGGGCGGGGGTACTAGGGTTGGC
GGATGAAGGGTATGTGTGGACGGGACCTACAAAAACCGACCCTTAGAGAG
ACTTTTTTTTTAATTTTCTTCGATTTTTGAAAATATTGGTACCAATTTCT
TTTCTTGAAATCAAAAACATTTCCTAAAATCGTGAATTGTGAAAAAACCG
ACCCTTAGAGAGAGTAATTTAAAGTTTTCTGAATTTTCCGACTCTTAGAG
AGACTTTGAAAGGTGAAAAAACCGACCCTTACCGTCTGCACATACCCAGC
ACCCATTTTTGCCTAAGTACCACCCCCCATCACCAAGACCTTATTCCTTA
CTTTTCAAGATGTCGAAGAATGTTTGACAACACCATGCAAATGCGCTCAA
CCGAAGAATTGCAAAGCCACGTGTACTGATACCACAGGGAGCTTCAAATG
TTCTTGTAACAAAGGATTTAAACTTGGAACTGACCAAAGAACTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034773XLOC_034773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055214-exon-scaffold_251-1575043694:226518..226886TCONS_00055214-exon-scaffold_251-1575043694:226518..226886Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1575043694:226095..226198TCONS_00055214-exon-scaffold_251-1575043694:226095..226198Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1575043694:225276..225368TCONS_00055214-exon-scaffold_251-1575043694:225276..225368Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1575043694:224799..224924TCONS_00055214-exon-scaffold_251-1575043694:224799..224924Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1575043694:224239..224377TCONS_00055214-exon-scaffold_251-1575043694:224239..224377Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1510915933:226518..226886TCONS_00055214-exon-scaffold_251-1510915933:226518..226886Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1510915933:226095..226198TCONS_00055214-exon-scaffold_251-1510915933:226095..226198Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1510915933:225276..225368TCONS_00055214-exon-scaffold_251-1510915933:225276..225368Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1510915933:224799..224924TCONS_00055214-exon-scaffold_251-1510915933:224799..224924Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1510915933:224239..224377TCONS_00055214-exon-scaffold_251-1510915933:224239..224377Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1491911889:226518..226886TCONS_00055214-exon-scaffold_251-1491911889:226518..226886Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1491911889:226095..226198TCONS_00055214-exon-scaffold_251-1491911889:226095..226198Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1491911889:225276..225368TCONS_00055214-exon-scaffold_251-1491911889:225276..225368Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1491911889:224799..224924TCONS_00055214-exon-scaffold_251-1491911889:224799..224924Clytia hemisphaericaexon
TCONS_00055214-exon-scaffold_251-1491911889:224239..224377TCONS_00055214-exon-scaffold_251-1491911889:224239..224377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:224239..226886 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.429802	0.148744	0.680986	0	0	0	0	0.578369	0.198568	0	0.233382	0.187492	0	0	0	0	0	0.193051
Blast
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BLAST of TCONS_00055214 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.413e-17
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 2 
Query:  512 RPGVCTCKSGYNGNRCKKDIDECLRKPCEQ--TCKNLPGTYACSCRAGYKKINNDSKSRQCV-NVEECLTTPCKCAQPKNCKATCTDTTGSFKCSCNKGF 802
            +P +C C  GY G+ C+ DIDECL  PC    TC NL G ++CSC  G+         R C  ++ ECL +PCK        A C +  GSF C C  G+
Sbjct: 3844 QPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFT-------GRACERDINECLQSPCKNG------AICQNFPGSFNCVCKTGY 3930
The following BLAST results are available for this feature:
BLAST of TCONS_00055214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT47.413e-1740.00Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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