TCONS_00055215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055215
Unique NameTCONS_00055215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055215 ID=TCONS_00055215|Name=TCONS_00055215|organism=Clytia hemisphaerica|type=transcript|length=736bp
AGGCAACTTCCAAGTGCCATCGTTTTATAACATTCACTGTTAGTTTTGTA
ATGTTTTCGAATTTGATATGGTTTGTTGCAGTTTTAATTTGTTGGAGTTT
TGTGGATTGGAAGGTCGATGCTCAGTTAGCTCCTGGAAAAGCTAATGTTT
GCGCTGCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAGTCGAGA
ATTGGCTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGGTCTTTG
TTATGGCAGGTGCACTCGCTCAAGTCAAATTACAGTATATTACACCACTG
CTGAAGTGCGATACAAACAGGGTTATCGATACTTCTGCTGCTCTGGATGG
GCGAGACAAGGTGATGGCTGTCCTACACCCATTTGTAACCCTGGTTGTGT
AAATGGACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTATA
ATGGAAACAGATGCAAAAAAGATATTGATGAATGTTTGAGAAAACCTTGC
GAACAAACTTGCAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAGC
AGGATATAAGAAAATCAACAATGATTCAAAATCTCGCCAGTGTGTCAATG
TCGAAGAATGTTTGACAACACCATGCAAATGCGCTCAACCGAAGAATTGC
AAAGCCACGTGTACTGATACCACAGGGAGCTTCAAATGTTCTTGTAACAA
AGGATTTAAACTTGGAACTGACCAAAGAACTTGTGA
Run BLAST on NCBI

protein sequence of TCONS_00055215-protein

>TCONS_00055215-protein ID=TCONS_00055215-protein|Name=TCONS_00055215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
ATSKCHRFITFTVSFVMFSNLIWFVAVLICWSFVDWKVDAQLAPGKANVC
AATIKQLYYVSVRKSRIGYQNYGTCCRRIFGLCYGRCTRSSQITVYYTTA
EVRYKQGYRYFCCSGWARQGDGCPTPICNPGCVNGHCSRPGVCTCKSGYN
GNRCKKDIDECLRKPCEQTCKNLPGTYACSCRAGYKKINNDSKSRQCVNV
EECLTTPCKCAQPKNCKATCTDTTGSFKCSCNKGFKLGTDQRTC
Run BLAST on NCBI

transcript from alignment at scaffold_251:224239..233577-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055215 ID=TCONS_00055215|Name=TCONS_00055215|organism=Clytia hemisphaerica|type=transcript|length=9339bp|location=Sequence derived from alignment at scaffold_251:224239..233577- (Clytia hemisphaerica)
AGGCAACTTCCAAGTGCCATCGTTTTATAACATTCACTGTTAGTTTTGTA
ATGTTTTCGAATTTGATATGGTTTGTTGCAGTTTTAATTTGTTGGAGTTT
TGTGGATTGGAAGGTCGATGCTCAGTTAGCTCCTGGAAAGTAAGTTTGAT
CGAAAATTTCTTAATAAACGCATGTAAAATTGTCAATTTCATAACTTTTT
TTGACTTTTTATTTTCATTAATTTCAAAAGGAGACAAAGTTACCCGCTAG
TTTTAGAAATGGTATGGTTTCATGCGCAAAAGAAATCAAAAAGTTTAATA
ATTCTTTCAGAGAAAGTTAGAGAAAGCTACTTTTTCAAACTCTTGAGTTT
GATTACAGCACCTGACCCCAAGAATGTAGTAAACCCCGAGAATGTAGCCT
TCTCATCTTTTAGCATTGTAGCCCTAACGATAGTTCAACTTCATAAAATA
TTTTTTCAGAGCATACTGTTGCTGTTACATATTACTTATTATCGGCGATC
CAAAAAATATCTGCAATCTGATTGGTTAAAAAGAGTACAATATATCTTGT
ATTTTACATGTAAAAATATAAATTGATGTTGTTGCTTTGTAGCGGTAGAA
GCAATCTAATGTCACTTTGCTACAAAAGAGTCCTCCAACACAAAAAGTGC
AATGTTTGGGTCACCGATAAACCAGTTATAAGACATTTGCTCGTACAATA
TGGAAATATTTCACTCGTTCCGGATTTTCCGTATATTTTCCGAGCCTAAT
ATTGTACCGAAAAATCTCGAAATCTCAGAACTCGTAAAATATTTCTCATA
TTGTACTCGCAACTGTCCGATAACTATTACTTATTTATAGACATTGAATT
TTAACTTGAATTTATTTTTTCCAAAGAAAATCTGAATCGAAGTTGATTGG
GTACTACCCGAATTGAGACATTTTTTGAATAAATCCTCTCTAAATCGAAA
TGTAGGTATTGGAAGATGTTATGATGATAGGGTGTTTTCTTACTCCTAAT
GAGCAATTTTCCTCATTCGTAATACGATAAAATTAATATCTTTGTTAGAT
TTTTGTCAGAGTATGGCAGAGTATATTTCTAAAGTTTGAATTTCATTTAG
AGAACAATAATTTCCGATGAAAACTGAAATTACGCTCCCAACAACCGAAT
TTTTTCACCTACATTCATTTTCAGAATAACGAAACGCTCTTTAGAATATC
GTTTTGGCACAAAATATTTCTAAAATTTGCTGTTATAATTAATCCAATTG
AAAAAATATGAACATTTTACTTTTACCAGATTTAAAGCCAAAAACCAAAC
CTATATTCTGGGGGTTATAACGAAAATGGGAGCCAACTTCAGGGACCAAA
TAAATTAGCCTATATATCAAAACCAATGAAACTAACCCCTGGGAAAGGAT
TTTGGGAGTTCAAAATTTCGTTGAAAACATTCAATATTTTTTGAAATGCA
AATCTACATCTTTCAGGTCTGATTCAAATTTCACCTACATTCTCGGGGTC
AGTTGCTGTAGTTGAAAATGATAATAAATATAAGTAGAATGCCTCAAGAA
TAGGTCGTGCTAATTGGGACGACTCGCAGCAAATTCGTACTCTCGCAGTT
CCAGCTCCTAAAGCCTGAAGGGCAGGCTCGGATACAGAGGGAGGCTATAA
CCAATGGAGGAGAGTGCACTTTATTATTGTATTACCTTATATGGAAACTA
ATTACTCTCCATGAATAAGACCTACCTCCTGTATCCGACCCTGAAGGGTG
AAGGATCGGATTCAATTTTTCGAACGGAGTTATGGAATTCGACGAAAATT
TCTTTTGTAAATTTGGTTCTCTGAAAATTGTGCAGTCTAGCAAAATGATA
GCGGAATTACGGAATCGGGCATCCCCTGAAGGTGAAAAATTTAATTGAAA
GCGGTGTTGAACCGTCTTGACTGCGTTGAAGGTTTTCAGTGCATTTTAGA
AAAGGGAAACTATTTCTATACCATTTTCTCAACATATTATTTTTAAAAAT
GATAAAAGAGAAATTTTTGAAACTGTCAGCACTGTCTTCATCTCCATGTC
TTTAGAAATACACGCTCAAAAATTCGGTCAATGTACGTACAATGAAAACA
CAGGCTTTTTTTCGGCGATTTCCTGGTCTTGATAAATGCTGAAACACAAT
ATTCTTCTAAAAAGCTCATATGATAACTTTAACTTAGCAAGGACTTTCTA
ATTTGACAAAAAGGCTTGCCATAAAGCTTTAAGAATGAACTTTCAGCACC
TTGCGGTTTAACATCATTACAATCAACTAATTATAACTCGACGACCATTT
AATTAATTTCTCTTTGGTGGCTGTTATCAATGCATGCCATTTTTACTAAC
TCAATTTTGAAGACCTTTAAAAAGTTATCTGGAAGGGAGGGTACTCATAA
AAACATGCCAAATACTATAAAAAGGTCCCCTAGCCAAAGAACAAAGTGAA
GTTGAATAAGTCATCTAAAAGGTAGATTGTGGAAAGATGAATTCTAAAAT
CTCTGTATTAGTGATCCGGTCAGTTCCGCCTTGGTGGAAATTATAACCAC
CGGTGGAATAGTGAGTAAACCCGTTCAAAATTACTTGAAATTTTCTACTC
CGATTAAAACAATGAAGTTTATGATCGTACAACCTGGTCAATAATCGTGT
TTGATTTGGTAGGTCAACCTGGTCAAAATCGAAAATCAAACCTTTATGAA
TTCTAGGAACAATTCTTGATAGTGAATTTTTTCCTTTTGCTCATATGTAT
AGATTTATTTTTTTCATAGCCGTCCTGATGAATTTCAAAACTTCACCGAG
CCACTGAGACAGGGGTGTAAGTTGGGAACCATTTAAGTCTCAATGGTGCT
GGACGAAATACACCCAATTCTCACAGACCCGCTAGGAGTTTTTCAGCCAG
TAGGGATAAAAATAACAATCTAAACAAGACGACTTAAAGTCGAAAATTTC
GCCTAAAGTTTTTAAACTGCATGGGAAAAAACAAGAAGTAGAGATGGAAG
CTAATCTGAAGTCTACTTTACATCGAGCCTTGATGAAACAAATTTATATG
AACAACGAGGCTCAAAATCGCTAAAAAGATAAGATCAATTTACGAACAAT
GGTTGTTTAATTCTTAAGAACTGATAACTGAAGGGCATATCACCAACTAT
AAAGAGTTATTAATTTGATTCTTATAGAGTATATGCTTATAATAAAAATA
CCTTATCAGGGAAAACTTCGTCGGGGAAAAGTGACGAAGTTTTGGCCGAG
TGAGGAATATTTTTCCCCGACAAAGTTTTCCCCGATAAGGTAAATATGTA
TGTTCATATTGTACGCGAGCCCTTGTTTACTTTGTAAGAACTAATTACCG
AAAGGTATATCACCGTCTATCGAGAGTTATTAATTAGATTCTTATAAAGT
ATATGCTTATAATAAAAATGCCTTATCAGGGAAAACTTCGTCGGGGAAAA
GTGACGAAGTTTTGGCCAAGTGACGAATATTTCTCCGCGACAAAGTTTTC
CCCGATAAGGTAAATATGTATGTTCATATTGCGCGCCATCCCTTGATTAC
TTTGTAAGAACTAATTACCGAAGGCTATATTACCTTCTATCGAGAGTTAT
TGATTTGATTCTTAAAAAGTATCTGCTTATAAGAAAAATAGATATGCTCA
TATTGCGCGTTATTCCTTGTTTACTTTGTAAGAACTTATTACCTAAGGGT
ATATCGCCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGTATATAC
TTATAAGAAAAATAAATATGCTCATATTGTGCGCCATCCCTTGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTAC
TTTGTAAGAACTAATTACCGAAGGCTGTATCACCGTCTATCAAGAGTTAT
TGATTTGATTCTTATAAAGTATATGCTTATAAGAAAAATTAATATTCTCA
TATTGTGCGCCATCCTTTGTTTACTTTGTAAGAACTAATTACCGAAGGGT
ATATCACCGTTTATCAAGAGTTATCGATATGATACTTATTAAGTATATGC
TTATAAGAAAATAAAGAAAAAATCAAAACTGTGAAGCTAAAGACACAAAG
ATATATGACGTAATCCAAAGAAAACCCGCGAAAATGATCCGTGGTTATAC
GAGCGTGTAATTTGTAAATTGAATTTAGTGAGTTTGTCCACCGTATCGAG
TACTTTCGTTTTCTAATTTTTTTATTACACCGCCGCCGCGAAAGGCTATC
GTAATACTTTCGCTAAGCGAAATTAAAAATGGTTAGTCTAGTGAGAGAAA
TTATGTTCTGAAAACATCCTTCGTGTGCACAAACTTGTTAAAAGCAAACT
AACTTTTTTAAATGATCAATTAGGTCTATAAGATCACAAAAACAAGTGGT
GAGAAAAATTTTGACCATTTTGCTGGTCCCCATACATAGGACGTCATCAC
TTTTGCTGGGACTTGAAGATGAAAGTAAAAATTAGAAGCTCAAATATGGC
TCAAATGAAAGATATTTATCCAAAGATTCCAAATAATATCACAACATATA
CCGGGAAATCAATACTTGAGAAGCTATAAAGGAAAATAGTTCAAAAAATA
ACGTCATTAATGACGTCATCGGCAATTAAAAAATCATCGAAATCGAAAAA
ATTTTGTTTCATTTGAAAGATGATCAGCTTGGGAACAAAAAAATATTACT
ACGGAAAACCTTGCTACATTGTAGCTCTCACTAGGTGGGGAAATCATAAA
ATATTATTCCCGTAAGTTTTTGTCTGTGGATTTAAAATTCCATTGTTTTC
AAGTCAGAAAACTCGGTGGGGATGGGGAAAATAGCATAATATTTTGCAAA
GAGGATTGGTTTATTTGATTATTTTCAGTGGGGACGAAAACTGGAGGATG
ATTTTCCACTGGGGACGCTATTTTGGCCAATTTTTCCAGTGGGAAGAGCC
AGTGGGCCTGTGAGAAGGGAGTGTCGAAATAGGTGGCTTGTAAAATTGTA
AAGTAATGCATTCTCTTCATCCATGATTATTTTCAAATAAATTTCTATAT
TAGTTGTTGACATTCAGCACGATAAATATCGACCAAAAGTTTATCACAGC
TTGTATTTCCAAGAAGGCCCATGAAACCCATGGCTCAAGGAGGGATTCTG
TGTGAACACAATTACTTCCTTACCTTGAACGATACATTTTGATATTCGAT
ATTTTCTTCCTTACTTTATTAGCTATTGTTCAAGATTGTTTAGAGAATGC
TACTTCTTTTATGAAATTTGAGATTATCAAAACAAAGTGAAAATTTTTCC
TCAACGCAAAACAAAAAGATTATCATCCTAAAAAACCTACAAAAAATGCA
GGAATTGCATTTTCATGTTATCAAGTAAATACTCCGCCAGAAATCGCGAT
TCCTCCTGCAAATAAAAAACAAGATTTATAATAAATGTGACTAGAAATAA
TTGTTGTTATTTTTCCACTTTCTTAGAAAAAAACTTTTCTGGTAAGTGAG
GACAGTCATCCAAATTTCCAACTTTATCAAGCACGTCTTGTACACGTTTT
TTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGAGGCCCAAA
AATTTAAGAACATTCTAAGAACATTCTAAGGCTTTGGAGACTTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAGAAATTACATCAAAATGCTCAAAA
AATGCTGAAAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAA
AAAACTAAGAACATCCGAAGGCTTTGAAAACTTTTGACGTTCTTATAAAA
AAAAAACGTGTATACATCAAGTCATAAAAAATAAGCCATTTTTTAAGCCA
TTTTCAGTTTGATTTTAAAAGACATAACTTTTGGAACAGATTTTATCAGC
AACGTAACATTCGATGATTAACGCAGCAAAATGCATGTTTCCCTCATATT
TCATCGTCAAATCTTCATGTTGTTTGGAAAGTGATCGACGTTGAGTCAAT
TTATAAGTCTAGCATGAATTATATATATACTGACAAACTGCTTGAAATAA
TTCACCAATTGGGGCCCCATGACTGAAAGTCTTCACCAACACATACAAAA
TGCATGATAACTAATCTTGTTATAGAGCTAATGTTTGCGCTGCAACAATC
AAACAACTTTACTACGTATCTGTCCGAAAGTCGAGAATTGGCTATCAAAA
TTACGGGACATGTTGTAGAAGAATCTTTGGTCTTTGTTATGGCAGGTGCA
CTCGCTCAAGGTAATCACTATTTCCATATTCTCATAGGCCAAATGTTTGT
TCAGCTACCATTAAACTACGTATTATATTATGTGTCTGTCCGAAAATCGA
GGATTGGTTATCAAAATTATCGGACATGTTGCAAAAGGTTTTTGGGAGCA
GGTGAACTCGCTCGAGGTAAGTTTCTAATTTATATTTATATTATGAAATT
ACGGCGAGAGGAACCTTCACAAAATTACTTATAGATAGCACATAATATAT
GAAGTAAAAATTAACTTCAATGCATACTTTTACACCTTCACGTGTGTCTC
GTTTAAAACACATATATTTTTTCTTCCAGTCAAATTACAGTATATTACAC
CACTGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCTGCTGCTCTG
GATGGGCGAGACAAGGTGATGGCTGTCCTACACGTGAGTTTTCTAAATCA
AGAATCCTCGCTGTTTTTTACCAAATCTTCGAAAAAACTCCCTGAGTATG
TATATATGTATCTTAAGGTATTTAATATGTTATAAGCTTATAGCGTTTGA
TATACAATGGAGTCTCGATAACTTAAACACTCACGGGCGGGGATTATAGA
TTTGTTCGCGTTGAGGAAATTTTGAGCTTTGGAGTAAGGTTTATAAGGCA
TTATTAATTGGGCTTTTCCAGAAAAAAACCATATACCCCCTGTTTCGGAG
GTCCATCCCTCTGTGGCTGGAAATGCTGTAACCCCCTGGAATTCCAGGCA
CTTTCAGGTTTAAACCCTCCGGAATTCTGAATTTTAGTAGGATTTAAAAA
GCTACCCCCAAGGAATTCCAGTTATTTTTGACAGATTTTTGTATCTCCCT
ATGGAATTCCACCACATATCAAACCTTACCCCTTGGAACGGAAATGGACC
TCCTCAACAGAGGGTATACGGTTTTTTTTCTGGAAAAGCCCATTGAAGGA
ACCATAAAACTAGTTCAAGTTAAGGAGGCATTCGAGTTAAAGAGGTTCGA
GCTAAAGATACTCCACTGTATTTGACTTTAAAGTTCGTGTCACGTGGAAA
CGAATCTCGGAATCTTAATTGGAATTATTGCGTAAGTTTTATCACACATA
AGACTTTTTAAGAAAGACAAATGAATGAGGAATCTTAGCTGTTTTATTCT
TCATTTTAGCCATTTGTAACCCTGGTTGTGTAAATGGACATTGTTCAAGA
CCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGAAACAGATGCAAAAA
AGGTCGATAATTCCACTACTTTTTACATAAACTCTTTTATTCATTCTTGT
GCATCACCTATCAAATATTCAGAAATGATTTTCAAAACTTACGAATACCA
ACGCTATGTCTAATCGCGATAAATTTCCCATCCAATAATCTCTCTCACAA
GGAGATTTAGAAATTTTCGAAATTTGGTGAGACAGGGGTGTTAAAATTCG
GTGAGACAGGGGTGTTGAAGTTTGGTGAGACAGGGGTGTTTAAATTTGGC
GAAACAGGGGTGTTGAAATTGATGAGACAGGTTTATTTTGGAGAGTACGA
CAATTAACAGGCCAGAGCCATGCTATAATTTTATCATATAATTTTTCTTA
CAGATATTGATGAATGTTTGAGAAAACCTTGCGAACAAACTTGCAAAAAC
CTTCCTGGAACCTATGCATGTTCGTGTAGAGCAGGATATAAGAAAATCAA
CAATGATTCAAAATCTCGCCAGTGTGTCAGTAAGTCGTTTTTTTTTTTAA
ATGATTGTATGAATGTGTTAAGCTTTTTTTCATTTGACGCCATAGTGGCG
GTTGGTAGATAACACCCAGGGGCGGGGGTACTAGGGTTGGCGGATGAAGG
GTATGTGTGGACGGGACCTACAAAAACCGACCCTTAGAGAGACTTTTTTT
TTAATTTTCTTCGATTTTTGAAAATATTGGTACCAATTTCTTTTCTTGAA
ATCAAAAACATTTCCTAAAATCGTGAATTGTGAAAAAACCGACCCTTAGA
GAGAGTAATTTAAAGTTTTCTGAATTTTCCGACTCTTAGAGAGACTTTGA
AAGGTGAAAAAACCGACCCTTACCGTCTGCACATACCCAGCACCCATTTT
TGCCTAAGTACCACCCCCCATCACCAAGACCTTATTCCTTACTTTTCAAG
ATGTCGAAGAATGTTTGACAACACCATGCAAATGCGCTCAACCGAAGAAT
TGCAAAGCCACGTGTACTGATACCACAGGGAGCTTCAAATGTTCTTGTAA
CAAAGGATTTAAACTTGGAACTGACCAAAGAACTTGTGA

Coding sequence (CDS) from alignment at scaffold_251:224239..233577-

>TCONS_00055215 ID=TCONS_00055215|Name=TCONS_00055215|organism=Clytia hemisphaerica|type=CDS|length=4392bp|location=Sequence derived from alignment at scaffold_251:224239..233577- (Clytia hemisphaerica)
ATGTCGAAGAATGTTTGACAACACCATGCAAATGCGCTCAACCGAAGAAT
TGCAAAGCCACGTGTACTGATACCACAGGGAGCTTCAAATGTTCTTGTAA
CAAAGGATTTAAACTTGGAACTGACCAAAGAACTTGTATATTGATGAATG
TTTGAGAAAACCTTGCGAACAAACTTGCAAAAACCTTCCTGGAACCTATG
CATGTTCGTGTAGAGCAGGATATAAGAAAATCAACAATGATTCAAAATCT
CGCCAGTGTGTCACCATTTGTAACCCTGGTTGTGTAAATGGACATTGTTC
AAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGAAACAGATGCA
AAAAAGTCAAATTACAGTATATTACACCACTGCTGAAGTGCGATACAAAC
AGGGTTATCGATACTTCTGCTGCTCTGGATGGGCGAGACAAGGTGATGGC
TGTCCTACACAGCTAATGTTTGCGCTGCAACAATCAAACAACTTTACTAC
GTATCTGTCCGAAAGTCGAGAATTGGCTATCAAAATTACGGGACATGTTG
TAGAAGAATCTTTGGTCTTTGTTATGGCAGGTGCACTCGCTCAAGGCAAC
TTCCAAGTGCCATCGTTTTATAACATTCACTGTTAGTTTTGTAATGTTTT
CGAATTTGATATGGTTTGTTGCAGTTTTAATTTGTTGGAGTTTTGTGGAT
TGGAAGGTCGATGCTCAGTTAGCTCCTGGAAAATGTCGAAGAATGTTTGA
CAACACCATGCAAATGCGCTCAACCGAAGAATTGCAAAGCCACGTGTACT
GATACCACAGGGAGCTTCAAATGTTCTTGTAACAAAGGATTTAAACTTGG
AACTGACCAAAGAACTTGTATATTGATGAATGTTTGAGAAAACCTTGCGA
ACAAACTTGCAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAGCAG
GATATAAGAAAATCAACAATGATTCAAAATCTCGCCAGTGTGTCACCATT
TGTAACCCTGGTTGTGTAAATGGACATTGTTCAAGACCTGGTGTTTGCAC
GTGTAAATCAGGCTATAATGGAAACAGATGCAAAAAAGTCAAATTACAGT
ATATTACACCACTGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCT
GCTGCTCTGGATGGGCGAGACAAGGTGATGGCTGTCCTACACAGCTAATG
TTTGCGCTGCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAGTCG
AGAATTGGCTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGGTCT
TTGTTATGGCAGGTGCACTCGCTCAAGGCAACTTCCAAGTGCCATCGTTT
TATAACATTCACTGTTAGTTTTGTAATGTTTTCGAATTTGATATGGTTTG
TTGCAGTTTTAATTTGTTGGAGTTTTGTGGATTGGAAGGTCGATGCTCAG
TTAGCTCCTGGAAAATGTCGAAGAATGTTTGACAACACCATGCAAATGCG
CTCAACCGAAGAATTGCAAAGCCACGTGTACTGATACCACAGGGAGCTTC
AAATGTTCTTGTAACAAAGGATTTAAACTTGGAACTGACCAAAGAACTTG
TATATTGATGAATGTTTGAGAAAACCTTGCGAACAAACTTGCAAAAACCT
TCCTGGAACCTATGCATGTTCGTGTAGAGCAGGATATAAGAAAATCAACA
ATGATTCAAAATCTCGCCAGTGTGTCACCATTTGTAACCCTGGTTGTGTA
AATGGACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAA
TGGAAACAGATGCAAAAAAGTCAAATTACAGTATATTACACCACTGCTGA
AGTGCGATACAAACAGGGTTATCGATACTTCTGCTGCTCTGGATGGGCGA
GACAAGGTGATGGCTGTCCTACACAGCTAATGTTTGCGCTGCAACAATCA
AACAACTTTACTACGTATCTGTCCGAAAGTCGAGAATTGGCTATCAAAAT
TACGGGACATGTTGTAGAAGAATCTTTGGTCTTTGTTATGGCAGGTGCAC
TCGCTCAAGGCAACTTCCAAGTGCCATCGTTTTATAACATTCACTGTTAG
TTTTGTAATGTTTTCGAATTTGATATGGTTTGTTGCAGTTTTAATTTGTT
GGAGTTTTGTGGATTGGAAGGTCGATGCTCAGTTAGCTCCTGGAAAATGT
CGAAGAATGTTTGACAACACCATGCAAATGCGCTCAACCGAAGAATTGCA
AAGCCACGTGTACTGATACCACAGGGAGCTTCAAATGTTCTTGTAACAAA
GGATTTAAACTTGGAACTGACCAAAGAACTTGTATATTGATGAATGTTTG
AGAAAACCTTGCGAACAAACTTGCAAAAACCTTCCTGGAACCTATGCATG
TTCGTGTAGAGCAGGATATAAGAAAATCAACAATGATTCAAAATCTCGCC
AGTGTGTCACCATTTGTAACCCTGGTTGTGTAAATGGACATTGTTCAAGA
CCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGAAACAGATGCAAAAA
AGTCAAATTACAGTATATTACACCACTGCTGAAGTGCGATACAAACAGGG
TTATCGATACTTCTGCTGCTCTGGATGGGCGAGACAAGGTGATGGCTGTC
CTACACAGCTAATGTTTGCGCTGCAACAATCAAACAACTTTACTACGTAT
CTGTCCGAAAGTCGAGAATTGGCTATCAAAATTACGGGACATGTTGTAGA
AGAATCTTTGGTCTTTGTTATGGCAGGTGCACTCGCTCAAGGCAACTTCC
AAGTGCCATCGTTTTATAACATTCACTGTTAGTTTTGTAATGTTTTCGAA
TTTGATATGGTTTGTTGCAGTTTTAATTTGTTGGAGTTTTGTGGATTGGA
AGGTCGATGCTCAGTTAGCTCCTGGAAAATGTCGAAGAATGTTTGACAAC
ACCATGCAAATGCGCTCAACCGAAGAATTGCAAAGCCACGTGTACTGATA
CCACAGGGAGCTTCAAATGTTCTTGTAACAAAGGATTTAAACTTGGAACT
GACCAAAGAACTTGTATATTGATGAATGTTTGAGAAAACCTTGCGAACAA
ACTTGCAAAAACCTTCCTGGAACCTATGCATGTTCGTGTAGAGCAGGATA
TAAGAAAATCAACAATGATTCAAAATCTCGCCAGTGTGTCACCATTTGTA
ACCCTGGTTGTGTAAATGGACATTGTTCAAGACCTGGTGTTTGCACGTGT
AAATCAGGCTATAATGGAAACAGATGCAAAAAAGTCAAATTACAGTATAT
TACACCACTGCTGAAGTGCGATACAAACAGGGTTATCGATACTTCTGCTG
CTCTGGATGGGCGAGACAAGGTGATGGCTGTCCTACACAGCTAATGTTTG
CGCTGCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAGTCGAGAA
TTGGCTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGGTCTTTGT
TATGGCAGGTGCACTCGCTCAAGGCAACTTCCAAGTGCCATCGTTTTATA
ACATTCACTGTTAGTTTTGTAATGTTTTCGAATTTGATATGGTTTGTTGC
AGTTTTAATTTGTTGGAGTTTTGTGGATTGGAAGGTCGATGCTCAGTTAG
CTCCTGGAAAATGTCGAAGAATGTTTGACAACACCATGCAAATGCGCTCA
ACCGAAGAATTGCAAAGCCACGTGTACTGATACCACAGGGAGCTTCAAAT
GTTCTTGTAACAAAGGATTTAAACTTGGAACTGACCAAAGAACTTGTATA
TTGATGAATGTTTGAGAAAACCTTGCGAACAAACTTGCAAAAACCTTCCT
GGAACCTATGCATGTTCGTGTAGAGCAGGATATAAGAAAATCAACAATGA
TTCAAAATCTCGCCAGTGTGTCACCATTTGTAACCCTGGTTGTGTAAATG
GACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGCTATAATGGA
AACAGATGCAAAAAAGTCAAATTACAGTATATTACACCACTGCTGAAGTG
CGATACAAACAGGGTTATCGATACTTCTGCTGCTCTGGATGGGCGAGACA
AGGTGATGGCTGTCCTACACAGCTAATGTTTGCGCTGCAACAATCAAACA
ACTTTACTACGTATCTGTCCGAAAGTCGAGAATTGGCTATCAAAATTACG
GGACATGTTGTAGAAGAATCTTTGGTCTTTGTTATGGCAGGTGCACTCGC
TCAAGGCAACTTCCAAGTGCCATCGTTTTATAACATTCACTGTTAGTTTT
GTAATGTTTTCGAATTTGATATGGTTTGTTGCAGTTTTAATTTGTTGGAG
TTTTGTGGATTGGAAGGTCGATGCTCAGTTAGCTCCTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034773XLOC_034773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055215-proteinTCONS_00055215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055215-exon-scaffold_251-1575043694:233439..233577TCONS_00055215-exon-scaffold_251-1575043694:233439..233577Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1575043694:226518..226652TCONS_00055215-exon-scaffold_251-1575043694:226518..226652Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1575043694:226095..226198TCONS_00055215-exon-scaffold_251-1575043694:226095..226198Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1575043694:225276..225368TCONS_00055215-exon-scaffold_251-1575043694:225276..225368Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1575043694:224799..224924TCONS_00055215-exon-scaffold_251-1575043694:224799..224924Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1575043694:224239..224377TCONS_00055215-exon-scaffold_251-1575043694:224239..224377Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:233439..233577TCONS_00055215-exon-scaffold_251-1510915933:233439..233577Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:226518..226652TCONS_00055215-exon-scaffold_251-1510915933:226518..226652Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:226095..226198TCONS_00055215-exon-scaffold_251-1510915933:226095..226198Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:225276..225368TCONS_00055215-exon-scaffold_251-1510915933:225276..225368Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:224799..224924TCONS_00055215-exon-scaffold_251-1510915933:224799..224924Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1510915933:224239..224377TCONS_00055215-exon-scaffold_251-1510915933:224239..224377Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:233439..233577TCONS_00055215-exon-scaffold_251-1491911889:233439..233577Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:226518..226652TCONS_00055215-exon-scaffold_251-1491911889:226518..226652Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:226095..226198TCONS_00055215-exon-scaffold_251-1491911889:226095..226198Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:225276..225368TCONS_00055215-exon-scaffold_251-1491911889:225276..225368Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:224799..224924TCONS_00055215-exon-scaffold_251-1491911889:224799..224924Clytia hemisphaericaexon
TCONS_00055215-exon-scaffold_251-1491911889:224239..224377TCONS_00055215-exon-scaffold_251-1491911889:224239..224377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:224239..233577 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0673202	0	0.0762234	0	1.8157	1.13528	0.692406	1.06981	1.40005	2.22315	1.74375	0.511793	6.77118	7.02734	2.68617	4.56436	0.960203	1.5134	4.40678	8.56508	0.88241	1.62578	0.512976	0.723389	9.70515	5.4897	1.21087	0.747509	2.56325	2.48929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00055215 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.634e-17
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 3 
Query:  417 RPGVCTCKSGYNGNRCKKDIDECLRKPCEQ--TCKNLPGTYACSCRAGYKKINNDSKSRQCV-NVEECLTTPCKCAQPKNCKATCTDTTGSFKCSCNKGF 707
            +P +C C  GY G+ C+ DIDECL  PC    TC NL G ++CSC  G+         R C  ++ ECL +PCK        A C +  GSF C C  G+
Sbjct: 3844 QPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFT-------GRACERDINECLQSPCKNG------AICQNFPGSFNCVCKTGY 3930
The following BLAST results are available for this feature:
BLAST of TCONS_00055215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT45.634e-1740.00Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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