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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055216 ID=TCONS_00055216|Name=TCONS_00055216|organism=Clytia hemisphaerica|type=transcript|length=90bp
GTTTTAATTTGTTGGAGTTTTGTGGATTGGAAGGTCGATGCTCAGTTAGC
TCCTGGAAAGCCAAATGTTTGTTCAGCTACCATTAAACTA Run BLAST on NCBI transcript from alignment at scaffold_251:226460..233497- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055216 ID=TCONS_00055216|Name=TCONS_00055216|organism=Clytia hemisphaerica|type=transcript|length=7038bp|location=Sequence derived from alignment at scaffold_251:226460..233497- (Clytia hemisphaerica)
GTTTTAATTTGTTGGAGTTTTGTGGATTGGAAGGTCGATGCTCAGTTAGC
TCCTGGAAAGTAAGTTTGATCGAAAATTTCTTAATAAACGCATGTAAAAT
TGTCAATTTCATAACTTTTTTTGACTTTTTATTTTCATTAATTTCAAAAG
GAGACAAAGTTACCCGCTAGTTTTAGAAATGGTATGGTTTCATGCGCAAA
AGAAATCAAAAAGTTTAATAATTCTTTCAGAGAAAGTTAGAGAAAGCTAC
TTTTTCAAACTCTTGAGTTTGATTACAGCACCTGACCCCAAGAATGTAGT
AAACCCCGAGAATGTAGCCTTCTCATCTTTTAGCATTGTAGCCCTAACGA
TAGTTCAACTTCATAAAATATTTTTTCAGAGCATACTGTTGCTGTTACAT
ATTACTTATTATCGGCGATCCAAAAAATATCTGCAATCTGATTGGTTAAA
AAGAGTACAATATATCTTGTATTTTACATGTAAAAATATAAATTGATGTT
GTTGCTTTGTAGCGGTAGAAGCAATCTAATGTCACTTTGCTACAAAAGAG
TCCTCCAACACAAAAAGTGCAATGTTTGGGTCACCGATAAACCAGTTATA
AGACATTTGCTCGTACAATATGGAAATATTTCACTCGTTCCGGATTTTCC
GTATATTTTCCGAGCCTAATATTGTACCGAAAAATCTCGAAATCTCAGAA
CTCGTAAAATATTTCTCATATTGTACTCGCAACTGTCCGATAACTATTAC
TTATTTATAGACATTGAATTTTAACTTGAATTTATTTTTTCCAAAGAAAA
TCTGAATCGAAGTTGATTGGGTACTACCCGAATTGAGACATTTTTTGAAT
AAATCCTCTCTAAATCGAAATGTAGGTATTGGAAGATGTTATGATGATAG
GGTGTTTTCTTACTCCTAATGAGCAATTTTCCTCATTCGTAATACGATAA
AATTAATATCTTTGTTAGATTTTTGTCAGAGTATGGCAGAGTATATTTCT
AAAGTTTGAATTTCATTTAGAGAACAATAATTTCCGATGAAAACTGAAAT
TACGCTCCCAACAACCGAATTTTTTCACCTACATTCATTTTCAGAATAAC
GAAACGCTCTTTAGAATATCGTTTTGGCACAAAATATTTCTAAAATTTGC
TGTTATAATTAATCCAATTGAAAAAATATGAACATTTTACTTTTACCAGA
TTTAAAGCCAAAAACCAAACCTATATTCTGGGGGTTATAACGAAAATGGG
AGCCAACTTCAGGGACCAAATAAATTAGCCTATATATCAAAACCAATGAA
ACTAACCCCTGGGAAAGGATTTTGGGAGTTCAAAATTTCGTTGAAAACAT
TCAATATTTTTTGAAATGCAAATCTACATCTTTCAGGTCTGATTCAAATT
TCACCTACATTCTCGGGGTCAGTTGCTGTAGTTGAAAATGATAATAAATA
TAAGTAGAATGCCTCAAGAATAGGTCGTGCTAATTGGGACGACTCGCAGC
AAATTCGTACTCTCGCAGTTCCAGCTCCTAAAGCCTGAAGGGCAGGCTCG
GATACAGAGGGAGGCTATAACCAATGGAGGAGAGTGCACTTTATTATTGT
ATTACCTTATATGGAAACTAATTACTCTCCATGAATAAGACCTACCTCCT
GTATCCGACCCTGAAGGGTGAAGGATCGGATTCAATTTTTCGAACGGAGT
TATGGAATTCGACGAAAATTTCTTTTGTAAATTTGGTTCTCTGAAAATTG
TGCAGTCTAGCAAAATGATAGCGGAATTACGGAATCGGGCATCCCCTGAA
GGTGAAAAATTTAATTGAAAGCGGTGTTGAACCGTCTTGACTGCGTTGAA
GGTTTTCAGTGCATTTTAGAAAAGGGAAACTATTTCTATACCATTTTCTC
AACATATTATTTTTAAAAATGATAAAAGAGAAATTTTTGAAACTGTCAGC
ACTGTCTTCATCTCCATGTCTTTAGAAATACACGCTCAAAAATTCGGTCA
ATGTACGTACAATGAAAACACAGGCTTTTTTTCGGCGATTTCCTGGTCTT
GATAAATGCTGAAACACAATATTCTTCTAAAAAGCTCATATGATAACTTT
AACTTAGCAAGGACTTTCTAATTTGACAAAAAGGCTTGCCATAAAGCTTT
AAGAATGAACTTTCAGCACCTTGCGGTTTAACATCATTACAATCAACTAA
TTATAACTCGACGACCATTTAATTAATTTCTCTTTGGTGGCTGTTATCAA
TGCATGCCATTTTTACTAACTCAATTTTGAAGACCTTTAAAAAGTTATCT
GGAAGGGAGGGTACTCATAAAAACATGCCAAATACTATAAAAAGGTCCCC
TAGCCAAAGAACAAAGTGAAGTTGAATAAGTCATCTAAAAGGTAGATTGT
GGAAAGATGAATTCTAAAATCTCTGTATTAGTGATCCGGTCAGTTCCGCC
TTGGTGGAAATTATAACCACCGGTGGAATAGTGAGTAAACCCGTTCAAAA
TTACTTGAAATTTTCTACTCCGATTAAAACAATGAAGTTTATGATCGTAC
AACCTGGTCAATAATCGTGTTTGATTTGGTAGGTCAACCTGGTCAAAATC
GAAAATCAAACCTTTATGAATTCTAGGAACAATTCTTGATAGTGAATTTT
TTCCTTTTGCTCATATGTATAGATTTATTTTTTTCATAGCCGTCCTGATG
AATTTCAAAACTTCACCGAGCCACTGAGACAGGGGTGTAAGTTGGGAACC
ATTTAAGTCTCAATGGTGCTGGACGAAATACACCCAATTCTCACAGACCC
GCTAGGAGTTTTTCAGCCAGTAGGGATAAAAATAACAATCTAAACAAGAC
GACTTAAAGTCGAAAATTTCGCCTAAAGTTTTTAAACTGCATGGGAAAAA
ACAAGAAGTAGAGATGGAAGCTAATCTGAAGTCTACTTTACATCGAGCCT
TGATGAAACAAATTTATATGAACAACGAGGCTCAAAATCGCTAAAAAGAT
AAGATCAATTTACGAACAATGGTTGTTTAATTCTTAAGAACTGATAACTG
AAGGGCATATCACCAACTATAAAGAGTTATTAATTTGATTCTTATAGAGT
ATATGCTTATAATAAAAATACCTTATCAGGGAAAACTTCGTCGGGGAAAA
GTGACGAAGTTTTGGCCGAGTGAGGAATATTTTTCCCCGACAAAGTTTTC
CCCGATAAGGTAAATATGTATGTTCATATTGTACGCGAGCCCTTGTTTAC
TTTGTAAGAACTAATTACCGAAAGGTATATCACCGTCTATCGAGAGTTAT
TAATTAGATTCTTATAAAGTATATGCTTATAATAAAAATGCCTTATCAGG
GAAAACTTCGTCGGGGAAAAGTGACGAAGTTTTGGCCAAGTGACGAATAT
TTCTCCGCGACAAAGTTTTCCCCGATAAGGTAAATATGTATGTTCATATT
GCGCGCCATCCCTTGATTACTTTGTAAGAACTAATTACCGAAGGCTATAT
TACCTTCTATCGAGAGTTATTGATTTGATTCTTAAAAAGTATCTGCTTAT
AAGAAAAATAGATATGCTCATATTGCGCGTTATTCCTTGTTTACTTTGTA
AGAACTTATTACCTAAGGGTATATCGCCGTCTATCAAGAGTTATTGATTT
GATTCTTATAAAGTATATACTTATAAGAAAAATAAATATGCTCATATTGT
GCGCCATCCCTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGTTTACTTTGTAAGAACTAATTACCGAAGGCTGTAT
CACCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGTATATGCTTAT
AAGAAAAATTAATATTCTCATATTGTGCGCCATCCTTTGTTTACTTTGTA
AGAACTAATTACCGAAGGGTATATCACCGTTTATCAAGAGTTATCGATAT
GATACTTATTAAGTATATGCTTATAAGAAAATAAAGAAAAAATCAAAACT
GTGAAGCTAAAGACACAAAGATATATGACGTAATCCAAAGAAAACCCGCG
AAAATGATCCGTGGTTATACGAGCGTGTAATTTGTAAATTGAATTTAGTG
AGTTTGTCCACCGTATCGAGTACTTTCGTTTTCTAATTTTTTTATTACAC
CGCCGCCGCGAAAGGCTATCGTAATACTTTCGCTAAGCGAAATTAAAAAT
GGTTAGTCTAGTGAGAGAAATTATGTTCTGAAAACATCCTTCGTGTGCAC
AAACTTGTTAAAAGCAAACTAACTTTTTTAAATGATCAATTAGGTCTATA
AGATCACAAAAACAAGTGGTGAGAAAAATTTTGACCATTTTGCTGGTCCC
CATACATAGGACGTCATCACTTTTGCTGGGACTTGAAGATGAAAGTAAAA
ATTAGAAGCTCAAATATGGCTCAAATGAAAGATATTTATCCAAAGATTCC
AAATAATATCACAACATATACCGGGAAATCAATACTTGAGAAGCTATAAA
GGAAAATAGTTCAAAAAATAACGTCATTAATGACGTCATCGGCAATTAAA
AAATCATCGAAATCGAAAAAATTTTGTTTCATTTGAAAGATGATCAGCTT
GGGAACAAAAAAATATTACTACGGAAAACCTTGCTACATTGTAGCTCTCA
CTAGGTGGGGAAATCATAAAATATTATTCCCGTAAGTTTTTGTCTGTGGA
TTTAAAATTCCATTGTTTTCAAGTCAGAAAACTCGGTGGGGATGGGGAAA
ATAGCATAATATTTTGCAAAGAGGATTGGTTTATTTGATTATTTTCAGTG
GGGACGAAAACTGGAGGATGATTTTCCACTGGGGACGCTATTTTGGCCAA
TTTTTCCAGTGGGAAGAGCCAGTGGGCCTGTGAGAAGGGAGTGTCGAAAT
AGGTGGCTTGTAAAATTGTAAAGTAATGCATTCTCTTCATCCATGATTAT
TTTCAAATAAATTTCTATATTAGTTGTTGACATTCAGCACGATAAATATC
GACCAAAAGTTTATCACAGCTTGTATTTCCAAGAAGGCCCATGAAACCCA
TGGCTCAAGGAGGGATTCTGTGTGAACACAATTACTTCCTTACCTTGAAC
GATACATTTTGATATTCGATATTTTCTTCCTTACTTTATTAGCTATTGTT
CAAGATTGTTTAGAGAATGCTACTTCTTTTATGAAATTTGAGATTATCAA
AACAAAGTGAAAATTTTTCCTCAACGCAAAACAAAAAGATTATCATCCTA
AAAAACCTACAAAAAATGCAGGAATTGCATTTTCATGTTATCAAGTAAAT
ACTCCGCCAGAAATCGCGATTCCTCCTGCAAATAAAAAACAAGATTTATA
ATAAATGTGACTAGAAATAATTGTTGTTATTTTTCCACTTTCTTAGAAAA
AAACTTTTCTGGTAAGTGAGGACAGTCATCCAAATTTCCAACTTTATCAA
GCACGTCTTGTACACGTTTTTTTTTTTATAAGAACAAACTATATAAGAAC
ATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAACATTCTAAG
GCTTTGGAGACTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAA
TTACATCAAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTAAGAACA
TTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTTGAAAA
CTTTTGACGTTCTTATAAAAAAAAAACGTGTATACATCAAGTCATAAAAA
ATAAGCCATTTTTTAAGCCATTTTCAGTTTGATTTTAAAAGACATAACTT
TTGGAACAGATTTTATCAGCAACGTAACATTCGATGATTAACGCAGCAAA
ATGCATGTTTCCCTCATATTTCATCGTCAAATCTTCATGTTGTTTGGAAA
GTGATCGACGTTGAGTCAATTTATAAGTCTAGCATGAATTATATATATAC
TGACAAACTGCTTGAAATAATTCACCAATTGGGGCCCCATGACTGAAAGT
CTTCACCAACACATACAAAATGCATGATAACTAATCTTGTTATAGAGCTA
ATGTTTGCGCTGCAACAATCAAACAACTTTACTACGTATCTGTCCGAAAG
TCGAGAATTGGCTATCAAAATTACGGGACATGTTGTAGAAGAATCTTTGG
TCTTTGTTATGGCAGGTGCACTCGCTCAAGGTAATCACTATTTCCATATT
CTCATAGGCCAAATGTTTGTTCAGCTACCATTAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055216-exon-scaffold_251-1575043694:233439..233497 | TCONS_00055216-exon-scaffold_251-1575043694:233439..233497 | Clytia hemisphaerica | exon |
| TCONS_00055216-exon-scaffold_251-1575043694:226460..226490 | TCONS_00055216-exon-scaffold_251-1575043694:226460..226490 | Clytia hemisphaerica | exon |
| TCONS_00055216-exon-scaffold_251-1510915933:233439..233497 | TCONS_00055216-exon-scaffold_251-1510915933:233439..233497 | Clytia hemisphaerica | exon |
| TCONS_00055216-exon-scaffold_251-1510915933:226460..226490 | TCONS_00055216-exon-scaffold_251-1510915933:226460..226490 | Clytia hemisphaerica | exon |
| TCONS_00055216-exon-scaffold_251-1491911889:233439..233497 | TCONS_00055216-exon-scaffold_251-1491911889:233439..233497 | Clytia hemisphaerica | exon |
| TCONS_00055216-exon-scaffold_251-1491911889:226460..226490 | TCONS_00055216-exon-scaffold_251-1491911889:226460..226490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:226460..233497 - |
Blast
The following BLAST results are available for this feature:
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