TCONS_00055218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055218
Unique NameTCONS_00055218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055218 ID=TCONS_00055218|Name=TCONS_00055218|organism=Clytia hemisphaerica|type=transcript|length=636bp
TGGACGAATTGGACAGAGTGGAGTAGCTCATGCTCAAAACCATGTAACAC
TGGTCACGTGACACGCCAACGTTTTTGCACCAACCCTCAACCTTTGTATG
GTGGTCAATCATGTCAAGGGAATTCAACCGAATATAAAGGCTGTCATTTT
CATCCTTGTGAAGAAATTGACGTGGACATTTCTGTTTCTTTTGATGAAGA
ATTTCAAGAAGATGATTATGTTAAACAATATATGTATAAACTTAGATTTG
ATAAATTTCGGGTTTTGTTGAACAACTCTGGTTTCGATGAATCCATCAAG
GAGATTGACGTCAACAGATTGAGATCTGGGAGTGTGATAACAGATATGAC
GATCACATTTCAACATTTGGATTCGTTTCAATTGATTTTCATGATGGATT
CTTTCGATAATGGTCAAGTCTTTGAAATTCGAGGTGGAAAAATTTCAATC
ACTTTCGACAAACCGTCAAACTTCTCCACCGATAAAGTCCCGCCAGCTCC
TACAAACATCAGCATCCAACAACAAAACGGTTCATGGATCATCAGCTGGT
CAAAAGTCAACAATTCTTTATCTTCGTATGGAAACGTTTCTGgatatatt
ttcttttacaaAGAAAGTTTCGAACCATCTTCATCG
Run BLAST on NCBI

protein sequence of TCONS_00055218-protein

>TCONS_00055218-protein ID=TCONS_00055218-protein|Name=TCONS_00055218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
WTNWTEWSSSCSKPCNTGHVTRQRFCTNPQPLYGGQSCQGNSTEYKGCHF
HPCEEIDVDISVSFDEEFQEDDYVKQYMYKLRFDKFRVLLNNSGFDESIK
EIDVNRLRSGSVITDMTITFQHLDSFQLIFMMDSFDNGQVFEIRGGKISI
TFDKPSNFSTDKVPPAPTNISIQQQNGSWIISWSKVNNSLSSYGNVSGYI
FFYKESFEPSSS
Run BLAST on NCBI

transcript from alignment at scaffold_251:273694..276996-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055218 ID=TCONS_00055218|Name=TCONS_00055218|organism=Clytia hemisphaerica|type=transcript|length=3303bp|location=Sequence derived from alignment at scaffold_251:273694..276996- (Clytia hemisphaerica)
TGGACGAATTGGACAGAGTGGAGTAGCTCATGCTCAAAACCATGTAACAC
TGGTCACGTGACACGCCAACGTTTTTGCACCAACCCTCAACCTTTGTATG
GTGGTCAATCATGTCAAGGGAATTCAACCGAATATAAAGGCTGTCATTTT
CATCCTTGTGAAGAAATTGACGTGGACATTTCTGTTTCTTTTGATGAAGA
ATTTCAAGAAGATGATTATGTTAAACAATATATGTATAAACTTAGATTTG
ATAAATTTCGGGTTTTGTTGAACAACTCTGGTTTCGATGAATCCATCAAG
GAGATTGACGTCAACAGATTGAGGTAACTTTGAAGGCGCTATGGTATAGT
GGTCATTGACCTTGGTTGCTGTAAAGGCGACTGAGGTTCAATTCCCACTC
GCAGTGGTTCACTTGGCAAATGAATGAACCTTCACCCGGGTCAACCCATG
CCATGTAAGGGGAATCGGGTAGTCAGTTCAAGGTGCTGACAGGGCGCTAA
TTAAAGGTGTCTATAGGTGCGAAAGAAGCCTCCTGCAACTCAGCCAAATA
GAAATGAATAATTTTTCTAGGAAGTTCTTCTCCAGCCATAGTACTTACCC
AGCTGGCATTACAACGTTGTTTTAACATTTATCTAATGTTCACAACGTCC
ATATAACGTTAGATGAATGTTGAAACAACGTCGTTTGCCAGCTGGGTAGA
ATCTTTAAGGTTTCGTACATCATTATGAAAATCATAACAGCGCTCCATCT
GCATACCCTGATTAGCTTTACTTCAAAGTCTGTTCCAAAAAAATGTAGCT
GACCGCATATTTTGATACATTGCTCTGGAAGGAAAAAAAATATAGTTAAA
ATTGATACCTTGTTGTTAATATAATTTTGGTTGGACGATCCCGTCTTTTA
ATTTTTTTAAATCAAGAAGAAGAAAAAAATAAAAAAATCTTGCNAAAAAA
TATAGTTAAAATTGATACCTTGTTGTTAATATAATTTTGGTTGGACGATC
CCGTCTTTTAATTTTTTTAAATCAAGAAGAAGAAAAAAACAAAAAAATCT
TGCGTTCATTCCTGATACTTAGATTTTCATAGATTTGTTCGATCGAAAGT
TTCTCACAAGCTCACAGTAGGTCCATTATTTTTAGCCAGTCATTATATTC
TTGAATCTTTTGATCTGAATACGTTCTCTTTTAGATCTGGGAGTGTGATA
ACAGATATGACGATCACATTTCAACATTTGGATTCGTTTCAATTGATTTT
CATGATGGATTCTTTCGATAATGGTCAAGTCTTTGAAATTCGAGGTGGAA
AAATTTCAATCACTTTCGACAAACCGTCAAACTTCTCCACCGATAAAGGT
ATAAACTACTTTTGTTGGCTTTTATTATCCTGTTGTTGCTGTTGTATTTT
ATTAACATTTCATTGACTTTTCCTTGATTTATCCTTGATTTATCCTTGAA
TTATCCTTGTAAAGCCCTTGAATTTCCTTGAATTTTCGTTGAATTTTCCT
GGCTTTTCCTTGAATTCTCCTTGACTTTTTTCTTGAATTATCGTTGAATT
TTCCTTGAATCTTCCCAGAATTTTCCTTGAATTATCCTGGCTTTTCCTTT
AATTATGCTTGAATTTTCTTTGAAATTTTCCTGGCTTTTCCTTGAATTCT
CCTTGAATTTTTTCTTGAATTATCGTTGAATTTTCCTTGAATCTTCCCAG
AATTTTCCTTGAATTATCCTGGCTTTTCCTTTAATTGTGCTTGAATTTTC
TTTGAAATTTTCCTGGCTTTTCCTTGAATTATGCTTGAATTTTCCTTGAA
TTTTTCCTGACTTTTCCCAGAATTCTCCTTGAATTTTCCTGGCTTTTCCT
TGAATTTTCCTTGAACTTTCCTGACTTTTACTTGGATGTTCCTCCAATTT
TCCTTGAACTTTCATGGAATTATCCTTGTATAATCTTTGAATTCTCCTTT
AATTTTCCTTGCTTTTCCTTGAATTTTCCTGGCTTTTCCTTGAATTATCC
TTGAATTTTCCTTGAACTTTCATGGAATTATCCTTGTATAATCTTTGAAT
TCTCCTTTAATTTTCCTTGCTTTTCCTTGAATTTTCCTGGCTTTTCCTTG
AATTATCCTTGAATTTTCCTTGATTATCCTCGAATTATCCTTGTAAAGTC
CTTGAATTTCCTTGAATTTTCGTTGAATTTTCCTGACTTTTCCTTGAATT
CTCCTTCAATTTTCCTGGCTTTTCTTTGAATTTTCCTGACTTTTCCTTGA
ATTCTCCTTGAATTTTCCTTGAATTCTCCTTGAATTTTCCTTGAATTATC
CTTGATTTATCCTTGAATTATCCTTGTAAAGTCCTTGAATTTCCTTGAAT
TTTCGTTGAATTTTCCTGACTTTTCCTTGAATTCTCCTTGAATTTTCCTG
GCTTTTCCTGACTTTTCCCAGAATTCTCCTTGAATTTTCCTGGCTTTTTC
TTGAATTTTCCTTGAATTTTCCTGCCTATAATTATCCTTGAACTATCCTT
GATCTTTACTGACTTTTACTTGGATGTTCCTCGAATTATCTAGTCTACAC
AATAGACAGATCCAGGCTTTTAGGCCTTACTCTTGGTCTATAGGCACTGC
TATAGGCGGCCACTAGTGACCCCCACCGGGAATTGCTTATTAATAGGTTT
AAACATAATAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATGTTT
ATCAATAGAGATTTTAAATAAAAGAATGTTTAAAACACAGCTGATTGGCT
TAGGTTTCGAAACTCTCTATTGTTTCATTAAAACCTCAGTGCGCATGAAT
TTCAATATTCAAAACAAGAGCAGTGCTCATAGCCCGAAGAGTAGGAGTTT
TACGCTCGAAACGAAGGAAGATATGACGTAGCCTACGAATTATCCTGATT
AATTTTTGAATTTCTTTGAGTTTTCTTTAATTGCCCTTGATTTGTTTTGT
GACATTACGCCATTAACACAACAACTATTTTGGGTATAAGAAACAGAAAA
TTAAATCAATATGTGAAATCCTTACAGTGGTGCCCATCGGTCGATCGTCC
TTCGGGAAAAAAACTCCCTAGGACAGTTGCCCTTAAGAAAATTGTCATGC
ACGGATATCCTGTATCAGCATTTTAGTTTATTTGATTTTACTTTTTTTTC
ACAGTCCCGCCAGCTCCTACAAACATCAGCATCCAACAACAAAACGGTTC
ATGGATCATCAGCTGGTCAAAAGTCAACAATTCTTTATCTTCGTATGGAA
ACGTTTCTGGATATATTTTCTTTTACAAAGAAAGTTTCGAACCATCTTCA
TCG

Coding sequence (CDS) from alignment at scaffold_251:273694..276996-

>TCONS_00055218 ID=TCONS_00055218|Name=TCONS_00055218|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_251:273694..276996- (Clytia hemisphaerica)
TCCCGCCAGCTCCTACAAACATCAGCATCCAACAACAAAACGGTTCATGG
ATCATCAGCTGGTCAAAAGTCAACAATTCTTTATCTTCGTATGGAAACGT
TTCTGGATATATTTTCTTTTACAAAGAAAGTTTCGAACCATCTTCATCGA
TCTGGGAGTGTGATAACAGATATGACGATCACATTTCAACATTTGGATTC
GTTTCAATTGATTTTCATGATGGATTCTTTCGATAATGGTCAAGTCTTTG
AAATTCGAGGTGGAAAAATTTCAATCACTTTCGACAAACCGTCAAACTTC
TCCACCGATAAAGTGGACGAATTGGACAGAGTGGAGTAGCTCATGCTCAA
AACCATGTAACACTGGTCACGTGACACGCCAACGTTTTTGCACCAACCCT
CAACCTTTGTATGGTGGTCAATCATGTCAAGGGAATTCAACCGAATATAA
AGGCTGTCATTTTCATCCTTGTGAAGAAATTGACGTGGACATTTCTGTTT
CTTTTGATGAAGAATTTCAAGAAGATGATTATGTTAAACAATATATGTAT
AAACTTAGATTTGATAAATTTCGGGTTTTGTTGAACAACTCTGGTTTCGA
TGAATCCATCAAGGAGATTGACGTCAACAGATTGAGTCCCGCCAGCTCCT
ACAAACATCAGCATCCAACAACAAAACGGTTCATGGATCATCAGCTGGTC
AAAAGTCAACAATTCTTTATCTTCGTATGGAAACGTTTCTGGATATATTT
TCTTTTACAAAGAAAGTTTCGAACCATCTTCATCGATCTGGGAGTGTGAT
AACAGATATGACGATCACATTTCAACATTTGGATTCGTTTCAATTGATTT
TCATGATGGATTCTTTCGATAATGGTCAAGTCTTTGAAATTCGAGGTGGA
AAAATTTCAATCACTTTCGACAAACCGTCAAACTTCTCCACCGATAAAGT
GGACGAATTGGACAGAGTGGAGTAGCTCATGCTCAAAACCATGTAACACT
GGTCACGTGACACGCCAACGTTTTTGCACCAACCCTCAACCTTTGTATGG
TGGTCAATCATGTCAAGGGAATTCAACCGAATATAAAGGCTGTCATTTTC
ATCCTTGTGAAGAAATTGACGTGGACATTTCTGTTTCTTTTGATGAAGAA
TTTCAAGAAGATGATTATGTTAAACAATATATGTATAAACTTAGATTTGA
TAAATTTCGGGTTTTGTTGAACAACTCTGGTTTCGATGAATCCATCAAGG
AGATTGACGTCAACAGATTGAGTCCCGCCAGCTCCTACAAACATCAGCAT
CCAACAACAAAACGGTTCATGGATCATCAGCTGGTCAAAAGTCAACAATT
CTTTATCTTCGTATGGAAACGTTTCTGGATATATTTTCTTTTACAAAGAA
AGTTTCGAACCATCTTCATCGATCTGGGAGTGTGATAACAGATATGACGA
TCACATTTCAACATTTGGATTCGTTTCAATTGATTTTCATGATGGATTCT
TTCGATAATGGTCAAGTCTTTGAAATTCGAGGTGGAAAAATTTCAATCAC
TTTCGACAAACCGTCAAACTTCTCCACCGATAAAGTGGACGAATTGGACA
GAGTGGAGTAGCTCATGCTCAAAACCATGTAACACTGGTCACGTGACACG
CCAACGTTTTTGCACCAACCCTCAACCTTTGTATGGTGGTCAATCATGTC
AAGGGAATTCAACCGAATATAAAGGCTGTCATTTTCATCCTTGTGAAGAA
ATTGACGTGGACATTTCTGTTTCTTTTGATGAAGAATTTCAAGAAGATGA
TTATGTTAAACAATATATGTATAAACTTAGATTTGATAAATTTCGGGTTT
TGTTGAACAACTCTGGTTTCGATGAATCCATCAAGGAGATTGACGTCAAC
AGATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034775XLOC_034775Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055218-proteinTCONS_00055218-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055218-exon-scaffold_251-1575043694:276674..276996TCONS_00055218-exon-scaffold_251-1575043694:276674..276996Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1575043694:275649..275812TCONS_00055218-exon-scaffold_251-1575043694:275649..275812Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1575043694:273694..273842TCONS_00055218-exon-scaffold_251-1575043694:273694..273842Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1510915933:276674..276996TCONS_00055218-exon-scaffold_251-1510915933:276674..276996Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1510915933:275649..275812TCONS_00055218-exon-scaffold_251-1510915933:275649..275812Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1510915933:273694..273842TCONS_00055218-exon-scaffold_251-1510915933:273694..273842Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1491911889:276674..276996TCONS_00055218-exon-scaffold_251-1491911889:276674..276996Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1491911889:275649..275812TCONS_00055218-exon-scaffold_251-1491911889:275649..275812Clytia hemisphaericaexon
TCONS_00055218-exon-scaffold_251-1491911889:273694..273842TCONS_00055218-exon-scaffold_251-1491911889:273694..273842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:273694..276996 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581602	0.192024	0.470371	0.368148	1.06053	0.827687	0.495653	0.533284	0.165676	0.17345	0	0.221339	1.67341	2.66053	3.01072	2.72529	0.693683	0.494352	5.64785	3.43735	1.14278	0.372685	0.476324	0.647039	1.05248	1.01464	0.245292	0.364759	0.553314	0.0939566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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