TCONS_00055219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055219
Unique NameTCONS_00055219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055219 ID=TCONS_00055219|Name=TCONS_00055219|organism=Clytia hemisphaerica|type=transcript|length=1546bp
ctacaacaacaacgaccacccctacgacaacaacgaccacccctacgACA
AGAACGACCACCCCTacgacaacaacgaccacccctacgacaacaacgac
cacccctacgacaacaacgaccacccctacgacaacaacaaccaccccta
cgacaacaacgaccacccctacgacaacaacgaccacccctacgACAACA
ACTACAATCACTACACCTCCCACAACAATGAACCAACCAACTTCAATGAT
CTCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAA
TGAATGCTCCTAGATCAACGACATCTTTAAAAACAACAACCAAATCATCT
TCAACTACAACAAGGATAACAACACCGAGACCAgCATCGATCAATGGTGG
ATGGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACGTGCGGAAAGC
AAaggatgaaaacaaaagaaagaaaatgcgATCAACCTTCTCCACAAAAT
GGTGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTCAATGTGAAAA
CGTCCCTTGTCCAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCG
AAGAAACAAATTCATTGTGCGGCGAAGGTGtgaaaagaagacattgcatt
gaaggTGTCTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAAT
TTGTAATCTCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTT
GTCATTTGGAAGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTGCCGTtg
gatattttcaaatcacttgacattcattgttttgattggagTATCGGACA
ATCTTCAATTACACCTTATTTTGATAATTCCACAAAACGTTGTTATGGTT
TGATTGAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGATGACCAG
CAAAGACTTTGCAAATGTATCGAGAAAGGTAGGTGAACTTGGTGAACTGT
TTGACTTTTGATTACATTCTAGATGTTTTCAAAGACGAATCAGTTGAAAA
ATTTtacaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaac
gaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgattaATTAATAAACGAAATAacattatctttttcttttc
agctGATATAACAGAGGGGAAATGGTCATCGTGGACCGAATGTTCAGCTT
CTTGCAATGGTCAAAAAACAAGACACAGAATTTGTGATTTTGATGATCCC
GATTTTCAATGTACCACTCAAACACAAAATGAAGATTGCTCAGCGCCATG
TCCTGtgaATGGAGGTTTGAGTTCTTGGAGCTATTGGGAGGAGTGCACCA
AAACATGTGGAGGAGGGCGACAACATCGTTATCGATACTGTACAAGTCCT
TCACCCTCCAACGGAGGTGCTTTTTGTGTTGGTCTATTCAATCAATCCAG
GATATGTGGTGTCGGAAAGTGTCCAGGTACATATTGAATCGTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_251:277175..281091-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055219 ID=TCONS_00055219|Name=TCONS_00055219|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at scaffold_251:277175..281091- (Clytia hemisphaerica)
CTACAACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACA
AGAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACAACGAC
CACCCCTACGACAACAACGACCACCCCTACGACAACAACAACCACCCCTA
CGACAACAACGACCACCCCTACGACAACAACGACCACCCCTACGACAACA
ACTACAATCACTACACCTCCCACAACAATGAACCAACCAACTTCAATGAT
CTCTCCTACGACAAAAACCACCCCTGCATCAACTACCTCTTCTACAGCAA
TGAATGCTCCTAGATCAACGACATCTTTAAAAACAACAACCAAATCATCT
TCAACTACAACAAGGATAACAACACCGAGACCAGGTTTGTTAAAATTTTC
AAATACAGTTTACGCTCTCTATCCATTATTCGATAATATTAAAAGTCTAT
TCGATACGCTTCCGTATTCGATTAAAATCCCATTCCCATTGAAAATCAAA
TGAGAGAGCGCCAACTGTACACTTTTTGTCTCGTATATAGTCCCTTTAAA
AGCTTTGGTCTGATGAATAAGATGCATTTGGCTCTTCCAGAAAATATCCA
TACATGGGGGGGGGGTGGAGGATATATTGTCCGGGGGGGGTAGCAAAAAA
TCATCAAATTTTGCCTTGTCCGGGGGTAAATTTGCTCTGTCCGGGGGGTC
AACTGATGCTTGTCCGGGATAAAACCCGTTGTCCGGGGGTGTAAATCACT
AAAAAAAGTATCCTTGCTGAAAATTGTTATATCCTCCACCCCCATATTCA
AATTTTTTCTGGAAAAGCCCATTGTTTTCACATTGTGTTAATTTAATTTC
ACAACTGGGTGATATGCTCCTTTTTGGACCTACCTCGGAGGTCCTAAAAA
TTAACTCATGTCCGTTCGTTCGTTTGTTACGAGCTTTTCTCAGGTAAAAA
CTGCCTAAAAATAGGTTTTTTTGGACTTTGAGCGGAATTGCTTCGAAAGC
TTTTTCTCAAACTTTGCACAAAGAGACAGACTGTAAGGCTCTCTAAAATT
TGGCTGCCATTAATTTTTCCCGAAAAAATCTTATTCGCCTTAAATGACGC
ACTTTTTTTTTCTGGGGAAATTCCCGTTAGTTACTTTTATGGAAAATGAG
TATGTCTTGCGATTGGCTTGTAAAATGATAATTTTTTCAAATCTGATGGA
GCCAAATTTTTCAAAATTGGGCCAAAAAATGTGCCCAAAAATGTGTTTTT
TTTGGACTTTGTGTGATATTGCTTTATTAATTCTTTCTGATTTTTTTGCA
TCAAAACAGAGAGCAAGGTTCTCTAAAATGTAAACCTTTTTANTCTGATG
TTTTTGCATCAAAACAGGTTCTCTGAAACCTTGAAACCTTTTTTCCTCGA
AAGTTTTTTTGGCTGTAAAAATCGGATTTTCTTATTTAGGGAAAATGTGC
TTGGCTTTGTTATTTTTTCTGATTTTTTGCACAATGATGTAAAATGGTAA
TATTTCAAATCTGATGGAGCCCGCACCTTGAAAAAATAAATTTTGGGTAA
ATTTGGGCCAGCCTAAAAATTAGGATTTTTGGATTTTGTGTGAAATTGCT
TCATTTATTTCTTTACTGATTTTTTGCATAAGGTTCTCTTAAAAGTTGCT
AAACCCGTGTTTCCTGGTCGTAAAAATTTGATTTTTGTATTGGGGAAAAT
TCCCTTCTGTCATTTTTAAGGAAAAAGAACATTTCTCGCGACTGGCTTGG
TATTGTTTTATGATTTCTTAGTTTGCATTTTCTTATTATTGTTGCCATAC
CTTCAATTTTCTTTAAATTACATTAGCCATTCAGCATGTAGCTTGTTTCC
TGTTTTTCATCGCTCAAAATAAACAAATAAGTTTATCCATTTAGCATCGA
TCAATGGTGGATGGAGTGATTGGGGAAATTGGAGTGAATGCACGCCAACG
TGCGGAAAGCAAAGGATGAAAACAAAAGAAAGAAAATGCGATCAACCTTC
TCCACAAAATGGTGGACTCCTGTGTGCTGGAATCAGTATTGAACACACTC
AATGTGAAAACGTCCCTTGTCCAGGTGATAATCATTTTCTTTCAGCTCCC
CAAAAAACGAAAGTGAAAGTGAAAGCGAAAGCGAAAGCGAAAGCGAATTC
TAAAGTTTATGTTGATTATGATTGACTTTTGTTTTGGTACGATTTTTTTA
CTTTAACTAATCACTGCGATCAAAGGCTTAGAATGTAATTCAAGACCTTT
TGATAGGTGTATGGGGTCCTTGGTCAAGTTGTCAATCAAGCGAAGAAACA
AATTCATTGTGCGGCGAAGGTGTGAAAAGAAGACATTGCATTGAAGGTGT
CTGTGTTGGCAATGATACTGAAATATGTCAAATTGGTGGAATTTGTAATC
TCATCTCTCCGGCTCCTTTTGGAATGAATTGTTCAAACTTTTGTCATTTG
GAAGGTATGTAAAAATTGGATCATAGGCAAGATTAAATTTAAAGGACCAT
GCGATTTTACTAACAACTCTCTGAATTGAAAAACATTTGTGGCATACAGC
TTCAAAAAATGTTTCTTTTGAAATTTTACAAAGTATTTCTAAAAACGTTT
TTTCTTTCTCGAAAACATTTTAAACGAATAATTCATGGGTATTGAACCAT
TTGAACGATCTAATGGAATTCATTGTCGAGATCGTCAGACATTTTAAAAC
CTGCGCCATAGGCAAACTAAAACTAATTTCAATATAGAACTGTCTTTCCA
AAATCTGCCTTGTTATAGGCAAAGCATGTGACAAAGAGGGGTTCGTCGTG
CCGTTGGATATTTTCAAATCACTTGACATTCATTGTTTTGATTGGAGTAT
CGGACAATCTTCAATTACACCTTATTTTGATAATTCCACAAAACGTTGTT
ATGGTTTGATTGAGCAAAAAGAAGTCGATTGTCAATCCACACCTAATGAT
GACCAGCAAAGACTTTGCAAATGTATCGAGAAAGGTAGGTGAACTTGGTG
AACTGTTTGACTTTTGATTACATTCTAGATGTTTTCAAAGACGAATCAGT
TGAAAAATTTTACAACGAACGAACGAACGAACGAACGAACGAACGAACGA
ACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAAC
GAACGAACGAACGAACGATTAATTAATAAACGAAATAACATTATCTTTTT
CTTTTCAGCTGATATAACAGAGGGGAAATGGTCATCGTGGACCGAATGTT
CAGCTTCTTGCAATGGTCAAAAAACAAGACACAGAATTTGTGATTTTGAT
GATCCCGATTTTCAATGTACCACTCAAACACAAAATGAAGATTGCTCAGC
GCCATGTCCTGGTAGGTTTAAACTTGTTCAACTCTGATCTATTATTTTCC
ATGACTCTGATTAGAAAAATAACAATTCAAAATAGATGAATGAGACTTTA
AAAGCTCTAAAACGTCCTAAAAAGACAGCCCCTTCTAACAGGCCCAGCAG
GATTTTTCTGCAAGTGGGGAAAAACGGATATCGATATCCCCATGTTTTTT
TTATAGCTGGTCCATTGTTTTCAATCAGAGTTGGGATGGAAAAAGTAACA
CAATATTTTGCAGTGAGGAGCAAGCGAGGTCGTTGCGTTGACTTCGGGTA
ATGTATCTCCCTACAGCCCTCACTAACCGGTCATTATTGTATTAGAACAT
ACATCAACATTTCTTTTCTTTTTTAGTGAATGGAGGTTTGAGTTCTTGGA
GCTATTGGGAGGAGTGCACCAAAACATGTGGAGGAGGGCGACAACATCGT
TATCGATACTGTACAAGTCCTTCACCCTCCAACGGAGGTGCTTTTTGTGT
TGGTCTATTCAATCAATCCAGGATATGTGGTGTCGGAAAGTGTCCAGGTA
CATATTGAATCGTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034776XLOC_034776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055219-exon-scaffold_251-1575043694:280708..281091TCONS_00055219-exon-scaffold_251-1575043694:280708..281091Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1575043694:279018..279197TCONS_00055219-exon-scaffold_251-1575043694:279018..279197Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1575043694:278638..278835TCONS_00055219-exon-scaffold_251-1575043694:278638..278835Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1575043694:277731..278323TCONS_00055219-exon-scaffold_251-1575043694:277731..278323Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1575043694:277175..277365TCONS_00055219-exon-scaffold_251-1575043694:277175..277365Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1510915933:280708..281091TCONS_00055219-exon-scaffold_251-1510915933:280708..281091Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1510915933:279018..279197TCONS_00055219-exon-scaffold_251-1510915933:279018..279197Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1510915933:278638..278835TCONS_00055219-exon-scaffold_251-1510915933:278638..278835Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1510915933:277731..278323TCONS_00055219-exon-scaffold_251-1510915933:277731..278323Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1510915933:277175..277365TCONS_00055219-exon-scaffold_251-1510915933:277175..277365Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1491911889:280708..281091TCONS_00055219-exon-scaffold_251-1491911889:280708..281091Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1491911889:279018..279197TCONS_00055219-exon-scaffold_251-1491911889:279018..279197Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1491911889:278638..278835TCONS_00055219-exon-scaffold_251-1491911889:278638..278835Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1491911889:277731..278323TCONS_00055219-exon-scaffold_251-1491911889:277731..278323Clytia hemisphaericaexon
TCONS_00055219-exon-scaffold_251-1491911889:277175..277365TCONS_00055219-exon-scaffold_251-1491911889:277175..277365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:277175..281091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218701	0.228959	0.442995	0.525087	0.427176	0.16878	0.203984	0.191548	0	0	0	0.211353	0	0.102936	0.270894	0	0.115334	0.366089	0	0	0	0	0.211671	0.194692	0.171413	1.08564	0	0	0.1634	0
Blast
[Close]
BLAST of TCONS_00055219 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 8.427e-17
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 2 
Query: 1196 FSADITEGKWSSWT---ECSASCN-GQKTRHRICDFDDPDFQ----CTTQTQNEDCS-APCPVNGGLSSWSYWEECTKTCGGGRQHRYRYCTSPSPSNGGAFCVGLFNQSRICGVGKCPGTY 1534
            +SA    G WS+WT   +CS  C+ G + R R+C+  +P +          + ++C+  PCPV+G  S WS W +C+ TCGGG   R R C++P+P+ GG  C+GL  +  +C    CP ++
Sbjct:  778 YSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGLHTEEALCNTQPCPESW 899
The following BLAST results are available for this feature:
BLAST of TCONS_00055219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A8.427e-1736.07Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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