TCONS_00055225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055225
Unique NameTCONS_00055225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055225 ID=TCONS_00055225|Name=TCONS_00055225|organism=Clytia hemisphaerica|type=transcript|length=807bp
AATTTTAAcaatgaaattattataaaaacatTATAACACTTGTATCATCT
TATATTTAGGAATGAACACTTAAATGATAAATAAACCATGACATGTATAA
ATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACC
GTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAA
AATTCAGTTTGATCAACACCAAATTTCTGAGAATGTTAAACCAGAGGCTG
GAGCTCTATCGACTGgtcaaaaagTGAAACAGGCTGGGAAAGATGCAAGT
TATATGGGAATCATGCTACTTGGCTTTGGTGTGACTGGTACTTTGATATG
GTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCAAATTCAGTATACT
CCAAAGCATTGAAATTAGTTAAAGATGATGATAGAATACAATATGAAATA
GGTGATAATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACGCCG
TCATGTAACTTCTCAAGAGTTTGTGGTGGATGGTGTGAACCATATGCGTG
TGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAACAGTTCATTGTGAA
GCTGTGGAGACATCAAGAGGCAAATTCGATTTCCGTTATATCTTCGTGGA
GATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATAAcagat
aattttattttttttattcaaatttagtttttttataatttcatagGCAA
GTACATATTTTTTAAGGCATGAACCCGAAAAAGAGAATTCTAAATTTAAT
Ctagaat
Run BLAST on NCBI

protein sequence of TCONS_00055225-protein

>TCONS_00055225-protein ID=TCONS_00055225-protein|Name=TCONS_00055225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MTCINRTLLACRFCTQLRKPTVLPSSCIAIQRYLTTSKIQFDQHQISENV
KPEAGALSTGQKVKQAGKDASYMGIMLLGFGVTGTLIWYVVDELMFGFSA
NSVYSKALKLVKDDDRIQYEIGDNLKGYGEETSRGRRRHVTSQEFVVDGV
NHMRVRFYLSGSNRKATVHCEAVETSRGKFDFRYIFVEMQGFPPSEPVIV
VDNR
Run BLAST on NCBI

transcript from alignment at scaffold_251:322694..326706-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055225 ID=TCONS_00055225|Name=TCONS_00055225|organism=Clytia hemisphaerica|type=transcript|length=4013bp|location=Sequence derived from alignment at scaffold_251:322694..326706- (Clytia hemisphaerica)
AATTTTAACAATGAAATTATTATAAAAACATTATAACACTTGTATCATCT
TATATTTAGGAATGAACACTTAAATGATAAATAAACCATGACATGTATAA
ATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACC
GTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAA
AATTCAGTTTGATCAACACCAAATTTCTGAGAATGTTAAACCAGAGGCTG
GAGCTCTATCGACTGGTCAAAAAGGTAAAAATAACACTCTTTGCTGCTCT
TTGATGGTAAACTTATAGTCTGTGATTTTGCTAACATCTTGGGCCTACCG
CGAAGATAAATTAACCCATGTTCATTTGTTCGTCCCTCTGTCTGTCTGTC
TGTTACCACCTTTGGTCAAGATTGGCTCATTAGTTTTTTTTAATTTTTGG
TACAGTAGGTGTAAAATTGCAATGTTCAGCCAAAACATTCATAACTGCGT
TGCTTTTTGCTTTAAACCATTCAAAAGCGAAAGCGATTGGGTTCTAATGC
TCATGTATTGTTTATCGATTTGATTGACTATTGATTTTGGTGCAATTAAT
TTAATCCAGTCAATCAGTACCCAAATCAAGATGAAAAAGATCAAAGGATC
AAAGTGGTGTGCAACCTTGGCAGATTTTTTTTCACAGCAATAGCCTTTAG
AGTGAATATGTGCCATGTGCGGTTGTCGGAATCTTCTTGGAGATTAACAA
AAATANAGAGCAATAGCCTTTAGAGTGAATATGTGCCATGTGCGGTTGTC
TTCTTGGAGATTAACAAAAATGGGTCTCAAATTTTCTTTCTTTTCATGAC
CTGTACTCAATAAAGAAATTGTTGGTCAGGATCTTTCATAAATTAAATCA
ATTTGGACGCTAAAGAAAATTTTAATTGATAGACTTTATAATTATACAAT
GAGACCAACCTATCTCTTATTTTTAGTGAAACAGGCTGGGAAAGATGCAA
GTTATATGGGAATCATGCTACTTGGCTTTGGTGTGACTGGTTGGTATATT
TTAATTTTCACCAGAAGAATGACCCAAATAGTATGATCCTCTTTTTTAAG
GGACTGTTAGAGCCATTGTTATATCACAAAATGGTAGGGGGGAGGTAGTA
AAGGGAGGGGTAAATTATCCAGGGGACAAAACTGTCCGGAAGTGGATTGT
CCTGCAAATGAATTCTCAACTGAAACTGTCATTGCATTATGATCTTAATG
TTTCTTGTTAATTTATGGAGCTTTTAGTTTAATATTAGAACATTTTCTTA
GGGAGAAAGTTTTGAATTTTAATTTTGAAAATCCAACGAAATTCAGAAAA
AAGGATTCAAAAGATTGTAAAGATCTCCAATTTTAGTGTTCTAAAAATAA
TTTTTCAATATTTTGTCTCATGATAGTTTGATATTTTAGTACTGATATCC
AGCCCTGATTTATGTGGTTGTGTTGTAGAAAAATCACATAGATCCTAAAT
TTTGTCTTCTTTTTGATTTTTAACCTTTTTTATTTGATGATTTGATAACT
GTTTCATTTTTCTAGGTACTTTGATATGGTATGTGGTAGACGAATTGATG
TTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGCATTGAAATTAGTTAA
AGATGATGATAGAGTAAGGTTTAAGTTTCTACTTCTCGGGCAAGGTCCTG
GCTTTTAAATAATGACATTGGAAAACAAAGAATGCAGCTAATTTGTTGTT
TAAAAATCTGAAATTTAGAATTAAACTTTATTTATTAGATTTATACTCTA
CTTTCGATTTTCCGAACAAAATTTGGTCGATATTTCTTGGTACTTCTTTT
ACATAGATACAATATGAAATAGGTGATAATCTCAAAGGCTATGGAGAAGA
AACTTCTCGAGGAAGACGCCGTCATGTAACGTAAGTATCTATTATACTCG
TTGGACTCTGAGAGGAAGAATGATCTTGTTTTATAAAAGTAAGCGATTAA
AATCAAAAGTCCAAAAAGAATTGTACAAGCGTACTACCTTTAATAAAAGC
CCAAACGTTGTTTAATTTTTTAGTTTTTTGGAGGGCATTTAATTTAGAAT
ACAAAATATGCCACTTTAGAGTTGTTGAAATAGGGGTCAAGATAAGTTAT
CTTAATTACAATTAACACATATCTAAGTTTTTTCTCCACAGGATTCTTTT
ACAGCTACTTGTTTTGAATGGAAAAATTTTCCTTCGAGGGGAGGGCGTTT
ATTGTTTCAAAAAATCAATTTTAGGAAACGTTCTAGAGGGTCACCATTTT
TCTGTATTTAGAGCATAATTTAAAGTTAGAATAAGACCATGGGTTTTAAT
TTCGTAATCCCAAAAAATATACAAATTTGACACTTTCAATTATCTTTTTG
GTCTTATTATAGTTCTCAAGAGTTTGTGGTGGATGGTGTGAACCATATGC
GTGTGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAACAGTTCATTGT
GAAGCTGTGGAGGTACGTTTGTTTAGATTTACCTTCTGGGTTTAGTGAAA
AAAGGTTCAAACATTTCAGCACACCTTGACGGGTTTTGTAGATTTGAATA
ACTTGAAAATTTTCCACCCAGGACATTCTTATTCCAACACCCTCCCCCCG
CTTATTAATTTTTGAGAACATGTCTTTGTAAGTTCCCTCTTTTGTCCTAA
TTCCGCTGTTTTGGGACAAGGTGGAGTTTTTACAAGCTCTTATTTAATTT
GGTTGGTCGTTAAGATGTAATAAAAGAATCTTATTACTTTTTCTAAAGAA
CGCGTCATCTCTATCACTTTAAATGACCAATTAGTGAAGTATCTTGTAAA
AACTCCAAGGCATCTCGCTGTTTTAGCCTCCTTTTCAAAAATTTTCCGCC
CAGGACATTTTTATTTCAACCCCCTTATTAAGCTTATAAGCTTATAAAGT
TTTGATATTTTTTCCAGCTCCCCCTCTCCCACGGCTAACTCCAACCTCCT
TAGACTAGTAAACTAGTCGTTGAAAACAGACCCATATACAAAAAATCAAG
CTCCAAATAAAAAGAATCGAAGGGATGAAGTTGCGTCTCTTTTCTGAATT
TCAACGACTAGAAGCTACTTCCCTCAAAAAACGTTGTTTAATTTTACAAC
TTTTTTTAAGTTTTTGAGAATCCATCCAACTTTTTTGACTAAATGATATT
ACATAGTAACATTGAACATGGGAACATATAAATAAACGAGCATTTCTAAA
ATCGCAATAAACAGAAAGAAAAATAAATGCAATCCCGCATGGGTCAGACA
TACAGAAATCTGTATGTCTCTCCTTACGATTTTAGGTGAAGAAAAAAAGG
CGTTGGAAGTAGCTTCTAGTCGGTTATTTTCCTTTTCTCTCACGCGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCTTT
TCTCTCACGCGCGCTGAATATTTAATTAGTGTTTACATTATTTGATTGAC
AGTTTTATTATAAGTAATAACCGACTAGTTTACTAGTCTACAACCTCCTC
AGCTATTAGATACCCGAGAGTAGGTGACTTTATTGAAAGAAAATGGCTAG
CCTATAGATATTTTTTTGCCTGCGTGTTCAAGAAATTTGTGACGAATGAA
AAAAATGATGGCGTTGAAAACCTACCTTTAATTAGCTTCAGCACGGAACC
AACTATTTTTGGGAGGATGGAAAGGTTCGCCAGAAGAACTTTGAATTTTC
TTTTCTTTTCTATAGACATCAAGAGGCAAATTCGATTTCCGTTATATCTT
CGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATA
ACAGATAATTTTATTTTTTTTATTCAAATTTAGTTTTTTTATAATTTCAT
AGGCAAGTACATATTTTTTAAGGCATGAACCCGAAAAAGAGAATTCTAAA
TTTAATCTAGAAT

Coding sequence (CDS) from alignment at scaffold_251:322694..326706-

>TCONS_00055225 ID=TCONS_00055225|Name=TCONS_00055225|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_251:322694..326706- (Clytia hemisphaerica)
ACATCAAGAGGCAAATTCGATTTCCGTTATATCTTCGTGGAGATGCAAGG
CTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATAACAGATAATTCTCAA
GAGTTTGTGGTGGATGGTGTGAACCATATGCGTGTGAGATTTTATTTATC
TGGTTCCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGGAGATACAAT
ATGAAATAGGTGATAATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGA
AGACGCCGTCATGTAACGTACTTTGATATGGTATGTGGTAGACGAATTGA
TGTTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGCATTGAAATTAGTT
AAAGATGATGATAGATGAAACAGGCTGGGAAAGATGCAAGTTATATGGGA
ATCATGCTACTTGGCTTTGGTGTGACTGATGACATGTATAAATCGCACTC
TGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACCGTGCTCCCC
AGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAAAATTCAGTT
TGATCAACACCAAATTTCTGAGAATGTTAAACCAGAGGCTGGAGCTCTAT
CGACTGGTCAAAAAGACATCAAGAGGCAAATTCGATTTCCGTTATATCTT
CGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATA
ACAGATAATTCTCAAGAGTTTGTGGTGGATGGTGTGAACCATATGCGTGT
GAGATTTTATTTATCTGGTTCCAATCGAAAAGCAACAGTTCATTGTGAAG
CTGTGGAGATACAATATGAAATAGGTGATAATCTCAAAGGCTATGGAGAA
GAAACTTCTCGAGGAAGACGCCGTCATGTAACGTACTTTGATATGGTATG
TGGTAGACGAATTGATGTTTGGCTTCAGTGCAAATTCAGTATACTCCAAA
GCATTGAAATTAGTTAAAGATGATGATAGATGAAACAGGCTGGGAAAGAT
GCAAGTTATATGGGAATCATGCTACTTGGCTTTGGTGTGACTGATGACAT
GTATAAATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAA
CCAACCGTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAAC
ATCAAAAATTCAGTTTGATCAACACCAAATTTCTGAGAATGTTAAACCAG
AGGCTGGAGCTCTATCGACTGGTCAAAAAGACATCAAGAGGCAAATTCGA
TTTCCGTTATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAG
TCATTGTGGTTGATAACAGATAATTCTCAAGAGTTTGTGGTGGATGGTGT
GAACCATATGCGTGTGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAA
CAGTTCATTGTGAAGCTGTGGAGATACAATATGAAATAGGTGATAATCTC
AAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACGCCGTCATGTAACGTA
CTTTGATATGGTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCAAAT
TCAGTATACTCCAAAGCATTGAAATTAGTTAAAGATGATGATAGATGAAA
CAGGCTGGGAAAGATGCAAGTTATATGGGAATCATGCTACTTGGCTTTGG
TGTGACTGATGACATGTATAAATCGCACTCTGCTTGCATGCAGATTTTGC
ACTCAATTGAGGAAACCAACCGTGCTCCCCAGTTCTTGTATTGCTATTCA
AAGGTATCTGACAACATCAAAAATTCAGTTTGATCAACACCAAATTTCTG
AGAATGTTAAACCAGAGGCTGGAGCTCTATCGACTGGTCAAAAAGACATC
AAGAGGCAAATTCGATTTCCGTTATATCTTCGTGGAGATGCAAGGCTTTC
CTCCCAGTGAACCAGTCATTGTGGTTGATAACAGATAATTCTCAAGAGTT
TGTGGTGGATGGTGTGAACCATATGCGTGTGAGATTTTATTTATCTGGTT
CCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGGAGATACAATATGAA
ATAGGTGATAATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACG
CCGTCATGTAACGTACTTTGATATGGTATGTGGTAGACGAATTGATGTTT
GGCTTCAGTGCAAATTCAGTATACTCCAAAGCATTGAAATTAGTTAAAGA
TGATGATAGATGAAACAGGCTGGGAAAGATGCAAGTTATATGGGAATCAT
GCTACTTGGCTTTGGTGTGACTGATGACATGTATAAATCGCACTCTGCTT
GCATGCAGATTTTGCACTCAATTGAGGAAACCAACCGTGCTCCCCAGTTC
TTGTATTGCTATTCAAAGGTATCTGACAACATCAAAAATTCAGTTTGATC
AACACCAAATTTCTGAGAATGTTAAACCAGAGGCTGGAGCTCTATCGACT
GGTCAAAAAGACATCAAGAGGCAAATTCGATTTCCGTTATATCTTCGTGG
AGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATAACAGA
TAATTCTCAAGAGTTTGTGGTGGATGGTGTGAACCATATGCGTGTGAGAT
TTTATTTATCTGGTTCCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTG
GAGATACAATATGAAATAGGTGATAATCTCAAAGGCTATGGAGAAGAAAC
TTCTCGAGGAAGACGCCGTCATGTAACGTACTTTGATATGGTATGTGGTA
GACGAATTGATGTTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGCATT
GAAATTAGTTAAAGATGATGATAGATGAAACAGGCTGGGAAAGATGCAAG
TTATATGGGAATCATGCTACTTGGCTTTGGTGTGACTGATGACATGTATA
AATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAAC
CGTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAA
AAATTCAGTTTGATCAACACCAAATTTCTGAGAATGTTAAACCAGAGGCT
GGAGCTCTATCGACTGGTCAAAAAGACATCAAGAGGCAAATTCGATTTCC
GTTATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATT
GTGGTTGATAACAGATAATTCTCAAGAGTTTGTGGTGGATGGTGTGAACC
ATATGCGTGTGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAACAGTT
CATTGTGAAGCTGTGGAGATACAATATGAAATAGGTGATAATCTCAAAGG
CTATGGAGAAGAAACTTCTCGAGGAAGACGCCGTCATGTAACGTACTTTG
ATATGGTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCAAATTCAGT
ATACTCCAAAGCATTGAAATTAGTTAAAGATGATGATAGATGAAACAGGC
TGGGAAAGATGCAAGTTATATGGGAATCATGCTACTTGGCTTTGGTGTGA
CTGATGACATGTATAAATCGCACTCTGCTTGCATGCAGATTTTGCACTCA
ATTGAGGAAACCAACCGTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGT
ATCTGACAACATCAAAAATTCAGTTTGATCAACACCAAATTTCTGAGAAT
GTTAAACCAGAGGCTGGAGCTCTATCGACTGGTCAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034781XLOC_034781Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055225-proteinTCONS_00055225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055225-exon-scaffold_251-1575043694:326433..326706TCONS_00055225-exon-scaffold_251-1575043694:326433..326706Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1575043694:325668..325730TCONS_00055225-exon-scaffold_251-1575043694:325668..325730Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1575043694:325044..325141TCONS_00055225-exon-scaffold_251-1575043694:325044..325141Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1575043694:324777..324850TCONS_00055225-exon-scaffold_251-1575043694:324777..324850Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1575043694:324195..324294TCONS_00055225-exon-scaffold_251-1575043694:324195..324294Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1575043694:322694..322891TCONS_00055225-exon-scaffold_251-1575043694:322694..322891Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:326433..326706TCONS_00055225-exon-scaffold_251-1510915933:326433..326706Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:325668..325730TCONS_00055225-exon-scaffold_251-1510915933:325668..325730Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:325044..325141TCONS_00055225-exon-scaffold_251-1510915933:325044..325141Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:324777..324850TCONS_00055225-exon-scaffold_251-1510915933:324777..324850Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:324195..324294TCONS_00055225-exon-scaffold_251-1510915933:324195..324294Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1510915933:322694..322891TCONS_00055225-exon-scaffold_251-1510915933:322694..322891Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:326433..326706TCONS_00055225-exon-scaffold_251-1491911889:326433..326706Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:325668..325730TCONS_00055225-exon-scaffold_251-1491911889:325668..325730Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:325044..325141TCONS_00055225-exon-scaffold_251-1491911889:325044..325141Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:324777..324850TCONS_00055225-exon-scaffold_251-1491911889:324777..324850Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:324195..324294TCONS_00055225-exon-scaffold_251-1491911889:324195..324294Clytia hemisphaericaexon
TCONS_00055225-exon-scaffold_251-1491911889:322694..322891TCONS_00055225-exon-scaffold_251-1491911889:322694..322891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:322694..326706 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
128.8	114.55	43.5956	36.9339	32.8026	26.8693	31.8065	38.2744	47.6943	42.4191	39.9107	32.4786	22.5693	27.6999	45.681	50.5049	60.481	62.9497	14.316	11.219	28.5658	29.7134	99.3824	84.7253	30.3835	28.9926	28.1469	33.1646	64.9927	71.9199
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013261Tim21
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
Vocabulary: Cellular Component
TermDefinition
GO:0005744mitochondrial inner membrane presequence translocase complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030150 protein import into mitochondrial matrix
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
Blast
[Close]
BLAST of TCONS_00055225 vs. Swiss-Prot (Human)
Match: TIM21 (Mitochondrial import inner membrane translocase subunit Tim21 OS=Homo sapiens GN=TIMM21 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.264e-32
Identity = 61/152 (40.13%), Postives = 96/152 (63.16%), Query Frame = 1 
Query:  253 ALSTGQKVKQAGKDASYMGIMLLGFGVTGTLIWYVVDELMFGFSANSVYSKALKLVKDDDRIQYEIGDNLKGYGEETSRGRRRHVTSQEFVVDGVNHMRVRFYLSGSN--RKATVHCEAVET-SRGKFDFRYIFVEMQGFPPSEPVIVVDNR 699
            A+ T QKVK+AG+D +Y+ ++L G  +TG L + +  EL    S + +Y +AL+  +    +    G+++KGYGE T RGRR+HV   E+V DG+ H  V+FY+ GS   ++ TV+ +  E    G++DFRYIFVE++ + P   +I+ DNR
Sbjct:   94 AVPTSQKVKEAGRDFTYLIVVLFGISITGGLFYTIFKELFSSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRFTEYVKDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESY-PRRTIIIEDNR 244
The following BLAST results are available for this feature:
BLAST of TCONS_00055225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM217.264e-3240.13Mitochondrial import inner membrane translocase su... [more]
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