TCONS_00055227 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055227
Unique Name	TCONS_00055227
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1189

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_251:459711..465434-
coding sequence from alignment at scaffold_251:459711..465434-

transcript sequence

>TCONS_00055227 ID=TCONS_00055227|Name=TCONS_00055227|organism=Clytia hemisphaerica|type=transcript|length=1189bp
AATGGACGAGGGTGAAGACATACAAGAATATCATAGCGAGACATTGGAAA
GCAAATTTTTTGCTCCCTTTGCAAATATACCTTACGTTTCTAATGTACAT
TACGCTCGGCCTTCCGATGTTTTTATACCGAAaggttattttcaaaacat
tgaagAGATTAAAAACTTCGAATTTTTTGAAGATGATACAGTTATATGTG
GATTTCTTAAAACAGGTACGAATTGGTGCGAGAGGATTGTTTGGGCACTC
CGTAATGATATAAAATTGAATATTCAACATGCACCCCCTGTATCAGTTTT
CGACATTGTTATGGGTATAGGAGATTTCGATAGTGACAACAACAAAGCTA
ACGATGAGATTTTTTCGTCCATGAAACGACCACGTGTTATCAAAATGCAT
CTTTCATATGAATTATTACCAAGACAGTTTCAACAAAAGCAACCTAAGAT
GATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAGTCCCTTCACGGTC
ACTTCTATACACTCTACGATGACTTTTCTGGATCTTTACAAGATGTTGTT
AATCTCATGACCGATGATGCTGGATGTTATTCTGGTCCGTTTTTTAGACA
CGTTTTGGGATACTGGAAGCGACGCTCTTATGAAAATATACTCATCATCT
TTTAcgaagaaatgaaaaaagatttatcagGTCATATCAAGAAGATTGCT
GATTTCTTAGACATTAAAATTTCAGATGAGGAAGTATCAAATCTGGCCAA
ACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCT
TCCATGCAAAGCAGGAAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAG
GGAAAGACAATGTTTAACAAGGGACAAGCTGGATCGTGGAAGGCTTTGTT
TACACCAGAGATGACAAAACAAATGGAAGAATGGGAATCAAAATGGTTGA
GAGATACTGATCTTGAACTTATTTATGAATAGTATTGGAGTATCGAAACA
TGTAAAATCGGAGttagataaaattttgaaacgaGTAAAATGaaacatac
acgcttttttttacaagaatagtgtactttggatgatgagggtcaagtat
tcttaagaaagtgccaaaattgagggtgaaatattcttaacgtattcttg
acttttttacaaacatgagaaaatcaatttgagagtttg

Run BLAST on NCBI

protein sequence of TCONS_00055227-protein

>TCONS_00055227-protein ID=TCONS_00055227-protein|Name=TCONS_00055227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MDEGEDIQEYHSETLESKFFAPFANIPYVSNVHYARPSDVFIPKGYFQNI
EEIKNFEFFEDDTVICGFLKTGTNWCERIVWALRNDIKLNIQHAPPVSVF
DIVMGIGDFDSDNNKANDEIFSSMKRPRVIKMHLSYELLPRQFQQKQPKM
IYMLRNPRDVCQSLHGHFYTLYDDFSGSLQDVVNLMTDDAGCYSGPFFRH
VLGYWKRRSYENILIIFYEEMKKDLSGHIKKIADFLDIKISDEEVSNLAK
HFSFDSMKRKAEQMIPFHAKQEGHSSTVEAAHKGKTMFNKGQAGSWKALF
TPEMTKQMEEWESKWLRDTDLELIYE

Run BLAST on NCBI

transcript from alignment at scaffold_251:459711..465434-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055227 ID=TCONS_00055227|Name=TCONS_00055227|organism=Clytia hemisphaerica|type=transcript|length=5724bp|location=Sequence derived from alignment at scaffold_251:459711..465434- (Clytia hemisphaerica)
AATGGACGAGGGTGAAGACATACAAGAATATCATAGCGAGACATTGGAAA
GCAAATTTTTTGCTCCCTTTGCAAATATACCTTACGTTTCTAATGTACAT
TACGCTCGGCCTTCCGATGTTTTTATACCGAAAGGTTATTTTCAAAACAT
TGAAGAGATTAAAAACTTCGAATTTTTTGAAGATGATACAGTTATATGTG
GATTTCTTAAAACAGGTAGCGTTCGTATTGAACATTTTTGTTTGTTTGGA
TATGTGTATATTTTGCATTGATATTTCCATTTTTTTATACATTCTAGACG
TGTGTTTCACCCCTTGACAATATAATCTTCTACCCCTTCTTTACAGTGTT
TTTGTTCGTGAACCGAAGAGTCATTTTTCGCTAATTTCGATCATTTCCGC
GAAAAATAGAAATCCGATTTTTGGCGAAAATCTCAAGGGAAAATGAAAGA
AATCGAAAAAAAAAAGATACTGATTGAGCGATTTAAACTTTGAAGTCTTA
TTTTGAGAACATTTATCCGCTTAAGGTACTCTGAAGCTGTCGAGATGGGA
AATTCTGTAATTTCACAGGTTCTCGTACTGAAGTTCACACTGCTGTCGAG
CTGTGTGCAATTTGGCGGAATTTATTTTGGCGATTTAAAAAAAATTCTAA
ATTTGGCGAGACATAATTTTGGCGAACGACCTATTTTTTGTTGAATATTA
AGCTTAAAAAGGATGAAAAAAGGGTTTCTAGTAAAAGAAATTTAAATTTG
GTGGGAATTAATTTTGGCGAATGGCCCATATATCTAAATTTAGCGGGAAG
AAATTTCGGCGAATTTGGCGAATTTTTGTGGCAATTCGCCAAATTCGCCA
AAATTTCTTCTCTTAAGGTAAGTTCAGGTTCTCGTTTTGAAGTTCACNCG
AATTTGGCGAATTTTTGTGGCAATTCGCCAAATTCGCCAAAATTTCTTCT
CTTAAGGTAAGTTCAGGTTCTCGTTGAAAGAAAGACTTGAACTGGAGACT
CTCTAAAGAAACGTTAATGTAATGATGTTTTATCGATAATTTTTAGGTAC
GAATTGGTGCGAGAGGATTGTTTGGGCACTCCGTAATGATATAAAATTGA
ATATTCAACATGCACCCCCTGTATCAGTTTTCGAGTAAGTGAATTTTAGA
GTCCGCAAAGCCTTAAAATGTTCTTAACTGGTTCTTAAGATTTTGGCCAT
CGAAGCCTTATGTTCTTATACACTTATTTGTTTTCGATGGTTTGAGACAG
ATTCGAATGTAGCCCAATCGGCGACGTATCGCTACGTCTTGTCTCTCCGG
TGGAGAAAATACCCTACAATTTCCGCCCTACTGGAAAGTTGAATTTTTTA
TTTTTTTTGTTTTTTTTTATAGTAGGTTTTAAACGGAACAAATATATAAA
TACCTTATCGGGGAAAAAATGTCAGAGTTTTATTTAGTCGGGGTTTTTAC
TCGTTTTTTTTTTCGTCGGGGGGAAATTTCGTCACCTAGAGGCATTTTCG
TCACTTTATCACGACCAAATTTCAAATTCCTCTCTTTTCCCGAATTCCCA
AATTTTTGGGCGGAAAATCTTTTTTTTAAAAGACTTGACTGACAACCGAC
ATTGTGTTACTATTGTTATTTTTTATCAAACCTTTCTAGTTTTAAGGGCT
CTGACCATGGTCGGAAAATTGATTTTAGTATTTGAACATAAAAGTTATGT
TTTAGGTTCTTTAACACTTTTAACAAAGAATTGCCTTTATAAATTGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
TTTAATGGGTAATTAACCTTTTTGTTTCGAATTTTTTTCAAACTGTCCGC
AAAGAATTGAACTGTTTTAAATTTTTCGGAAAAACTTTCTAAATTAACGC
ATCAAAAGTGATGGCTGTTTTTCTATGAAAAATTGGGATGAAAAATTCGT
CAAAAAGCACTATTTTCAAGATTTTGAAGCAAATAAACTTTTAGAAAAAT
TTTCCGAAAAAATAAATTTTAGTTTGATAAAAGATACACCATCTACCGCA
GCAAAATTCTTTTCAAAATGTTTTTTCTCCACAGAAACTAAGCTCTTCAA
AGTTTGCAAAAGTCTTCATTTTCTTCTTCAACAAATTTTTTCATTGTGAT
TCTTAAATTTTCAGACTCAATGATAATTGGTCTAACAGAAGATGTATAAC
ATGCCACAGTTTTGTGGGCTACATCAAGTAGAACTTTACATTTTGTAAGT
GGCAAATATAAAACCGGGTAAAAGTTTTGGGCGGGGGAAAAAATCAGGTA
AAAGTTTTGGTTGGGGATAAAAAAAATCGGGTAAAACTTTTGGTCGGGTG
TTAAAATATCAAAGAAAAAATTCGTCGGGGGAAAATTTCGTCACCCCTTC
AAAATTTTCGTCACTTTCCCCAGACATTTCTCCCCCGATAAGGTACGCAA
AGTTCCTAGCCTCCCGCTAAAAACCCTAGATTATACCACCAGGAGGAAGG
AACCAAAAACTGAGAACAATAGAATTCCCAATCCCTTTTTGTATTTCAAT
AGAAATTTCCATCGCCAGACCGGGGCTGTGAGCACGGGTGTTTTAAAGTG
AAAAGAACAAAATGTTTGAAACAGGTGCTGCAAAAACCAAATACATGTTT
TTTCTTTTATAAGCATAACGTTTATAAGCATACGCAGGCTCAGTTTTCGG
CACCTAAACAATGGTTCTATTGTTTTAGAACAATAGAATGCTAAGCATAA
TGCGAGCCTGATATAGGGGCAGACACTTGCTTATAAAAAAAAACATGTAC
ACAAATGGTAACGAAAGGATATGTTCTACATAGTTGCCATTGTTGCCACT
CTCTCATTCGATGTTCAAGGGGTCAAGAATTTTCTTCAAATCAGAGAAAT
ATTTGAATTAGAGAGTACTTTCCACCAGAAGGAACCAATGGTTTAGTTCC
GATTACAGATAAATTCGAATTAAAGAGGTTCGAATTAGAAAAATATGACA
ATAGGAAAATATTAGATAGAGAGTTGCCCTGGTTCGGTAAAATTTTGTAA
TCTAAACTTTCCAGATGTTTAAAAGTTTCCCATACATCAATCACTGTCAT
ATCAAAGGATTATCATCTTTCAATATCACAGCATTGTTATGGGTATAGGA
GATTTCGATAGTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCCAT
GAAACGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAA
GACAGTTTCAACAAAAGCAACCTAAGGTATTTATACTCTTTCTCACCTAC
AAACATCAATAGAATCTGATAGAGCGATTTGTAAATAAGGCTAAAATAAG
ATGATGTTGGAAATTTTCATACTTGACAAAATATAGCAAACAAAATAGAT
CAACAGACGATAATTGGCTTCACATGAAAACTCAGATTACCCCGGAGAAT
TTCTCAACGATGCTTTGTGTGGAAAAAAATTCACCGTGAACTTTTTTCCG
CGCAAAGCATTGTGAGTAATTTTCGGGGGTCAAATCTGAGTTACTTTCAC
CTTAAGCCGATATCGTCTACATTACATACTAGGCCAGTCAATCCCAAGGT
GCATCACGTTTCGTAGTACTCTACGGAAATCAAGAATTTCCGTAGAGAAC
GGGACTTACCGTGAAAAGCACAGGCCGATATCATATATTGACCTGTGCTG
ACCAATCGAGATTCAGCACGCAATCAAAATGAATCTATGTTTTCATTTTC
ATTTCTGTCATTTGTTTTCCTTTTTTCTGCTGAGCCAGCTTTTCCCATAA
ATTATGCTCGCGCATCGAAAATATCAAAATGCGCGCGAAAGTACTGCTAA
GTAATACGCCGAAAACTGGTAAATCAGGCCGAACCTGCATTGCAGGGAAA
AACTTCCCTGCAGGTGAGTTACCTGCGCCAAGCGTTAAACAAGCAGCAAA
AATATCATAAACTAAACTGTGAACAAAGTTTAACGCTTGGATTCCCAGGG
TAACTTAACCTCTGATAATCAGGTAAAAAGGGACTGTTTACATACAAGTC
TACAGAAAGCCAAATATTTGACGCAAATCATCGGCAAACATTTTTTTATA
TCACAATAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAGTC
CCTTCACGGTCACTTCTATACACTCTACGATGACTTTTCTGGATCTTTAC
AAGATGTTGTTAATCTCATGACCGATGATGCTGGATGTTATTCTGGTCCG
TTTTTTAGACACGTTTTGGGATACTGGAAGCGACGCTCTTATGAAAATAT
ACTCATCATCTTTTACGAAGAAATGAAAAAAGATTTATCAGGTCATATCA
AGAAGATTGCTGATTTCTTAGACATTAAAATTTCAGATGAGGAAGTATCA
AATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCA
AATGATTCCCTTCCATGCAAAGCAGGTCAGTGTGGAACGATTTTTTCAAA
ATCTTTGCTCAAATTTCAGATGGAAAAACAATTTAGCACAATCAAATCCT
ACTTACAATCATAAGCCATANTTCAAAATCTTTGCTCAAATTTCAGATGG
AAAAACAATTTAGCACAATCAAATCCTACTTACAATCATAAGCCATATAA
TAAGGCGAAGTAGTGGAGTTGATATCCACTCTCTTTTTCATGCCGAAGGT
CAGTTTTCGATTCCCATTCGGTGCAATAAATGGTTTGACCAGTGAATCCT
ATTTATACCGACATTTTTCCAGTTTCATAATACCAGGGGGTATTTTACAG
CACCATGAATAACTTTTGATCTAGTTGAAATTTTTACACTAAATTTGGAA
CAGATGTTGCTTATCATGGAAAGATTTAAAAGATTTTGTTAAGTCAGAAA
GTTTTGTGTGCTTTGAAAAATGTGAAGTAGTGCATGGGTGGTGTAAAATA
CACCTTGGTAGAAATAGGGTTTTATCCAGGTTAATACGTCATGTGTCAAT
GTGAGGAGAAATAGGTATTACAACTCGGATACCGAAGAAGGGAGGAGACC
TTTGTGGTATTGCATCGATATTTGTCAGGTTCACCTTTGTACTATAACAC
TTTGTAATAAAAATAAACGCATTTTGTTTCAAATTGAACAACTTTTCAGG
AAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTT
AACAAGGGACAAGCTGGATCGTGGAAGGCTTTGTTTACACCAGAGATGAC
AAAACAAATGGAAGAATGGGAATCAAAATGGTTGAGAGATACTGATCTTG
AACTTATTTATGAATAGTATTGGAGTATCGAAACATGTAAAATCGGAGTT
AGATAAAATTTTGAAACGAGTAAAATGAAACATACACGCTTTTTTTTACA
AGAATAGTGTACTTTGGATGATGAGGGTCAAGTATTCTTAAGAAAGTGCC
AAAATTGAGGGTGAAATATTCTTAACGTATTCTTGACTTTTTTACAAACA
TGAGAAAATCAATTTGAGAGTTTG

Coding sequence (CDS) from alignment at scaffold_251:459711..465434-

>TCONS_00055227 ID=TCONS_00055227|Name=TCONS_00055227|organism=Clytia hemisphaerica|type=CDS|length=4905bp|location=Sequence derived from alignment at scaffold_251:459711..465434- (Clytia hemisphaerica)
GAAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTT
TAACAAGGGACAAGCTGGATCGTGGAAGGCTTTGTTTACACCAGAGATGA
CAAAACAAATGGAAGAATGGGAATCAAAATGGTTGAGAGATACTGATCTT
GAACTTATTTATGAATAGATGATTTACATGCTTCGAAACCCAAGAGATGT
TTGCCAGTCCCTTCACGGTCACTTCTATACACTCTACGATGACTTTTCTG
GATCTTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATGTTAT
TCTGGTCCGTTTTTTAGACACGTTTTGGGATACTGGAAGCGACGCTCTTA
TGAAAATATACTCATCATCTTTTACGAAGAAATGAAAAAAGATTTATCAG
GTCATATCAAGAAGATTGCTGATTTCTTAGACATTAAAATTTCAGATGAG
GAAGTATCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAA
AGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATA
GGAGATTTCGATAGTGACAACAACAAAGCTAACGATGAGATTTTTTCGTC
CATGAAACGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTAC
CAAGACAGTTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAGAGGA
TTGTTTGGGCACTCCGTAATGATATAAAATTGAATATTCAACATGCACCC
CCTGTATCAGTTTTCGAATGGACGAGGGTGAAGACATACAAGAATATCAT
AGCGAGACATTGGAAAGCAAATTTTTTGCTCCCTTTGCAAATATACCTTA
CGTTTCTAATGTACATTACGCTCGGCCTTCCGATGTTTTTATACCGAAAG
GTTATTTTCAAAACATTGAAGAGATTAAAAACTTCGAATTTTTTGAAGAT
GATACAGTTATATGTGGATTTCTTAAAACAGGAAGGTCATAGTTCAACAG
TCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGACAAGCTGGA
TCGTGGAAGGCTTTGTTTACACCAGAGATGACAAAACAAATGGAAGAATG
GGAATCAAAATGGTTGAGAGATACTGATCTTGAACTTATTTATGAATAGA
TGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAGTCCCTTCACGGT
CACTTCTATACACTCTACGATGACTTTTCTGGATCTTTACAAGATGTTGT
TAATCTCATGACCGATGATGCTGGATGTTATTCTGGTCCGTTTTTTAGAC
ACGTTTTGGGATACTGGAAGCGACGCTCTTATGAAAATATACTCATCATC
TTTTACGAAGAAATGAAAAAAGATTTATCAGGTCATATCAAGAAGATTGC
TGATTTCTTAGACATTAAAATTTCAGATGAGGAAGTATCAAATCTGGCCA
AACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTCCC
TTCCATGCAAAGCAGCATTGTTATGGGTATAGGAGATTTCGATAGTGACA
ACAACAAAGCTAACGATGAGATTTTTTCGTCCATGAAACGACCACGTGTT
ATCAAAATGCATCTTTCATATGAATTATTACCAAGACAGTTTCAACAAAA
GCAACCTAAGGTACGAATTGGTGCGAGAGGATTGTTTGGGCACTCCGTAA
TGATATAAAATTGAATATTCAACATGCACCCCCTGTATCAGTTTTCGAAT
GGACGAGGGTGAAGACATACAAGAATATCATAGCGAGACATTGGAAAGCA
AATTTTTTGCTCCCTTTGCAAATATACCTTACGTTTCTAATGTACATTAC
GCTCGGCCTTCCGATGTTTTTATACCGAAAGGTTATTTTCAAAACATTGA
AGAGATTAAAAACTTCGAATTTTTTGAAGATGATACAGTTATATGTGGAT
TTCTTAAAACAGGAAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAGGG
AAAGACAATGTTTAACAAGGGACAAGCTGGATCGTGGAAGGCTTTGTTTA
CACCAGAGATGACAAAACAAATGGAAGAATGGGAATCAAAATGGTTGAGA
GATACTGATCTTGAACTTATTTATGAATAGATGATTTACATGCTTCGAAA
CCCAAGAGATGTTTGCCAGTCCCTTCACGGTCACTTCTATACACTCTACG
ATGACTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCGATGAT
GCTGGATGTTATTCTGGTCCGTTTTTTAGACACGTTTTGGGATACTGGAA
GCGACGCTCTTATGAAAATATACTCATCATCTTTTACGAAGAAATGAAAA
AAGATTTATCAGGTCATATCAAGAAGATTGCTGATTTCTTAGACATTAAA
ATTTCAGATGAGGAAGTATCAAATCTGGCCAAACATTTTTCCTTTGATTC
GATGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATT
GTTATGGGTATAGGAGATTTCGATAGTGACAACAACAAAGCTAACGATGA
GATTTTTTCGTCCATGAAACGACCACGTGTTATCAAAATGCATCTTTCAT
ATGAATTATTACCAAGACAGTTTCAACAAAAGCAACCTAAGGTACGAATT
GGTGCGAGAGGATTGTTTGGGCACTCCGTAATGATATAAAATTGAATATT
CAACATGCACCCCCTGTATCAGTTTTCGAATGGACGAGGGTGAAGACATA
CAAGAATATCATAGCGAGACATTGGAAAGCAAATTTTTTGCTCCCTTTGC
AAATATACCTTACGTTTCTAATGTACATTACGCTCGGCCTTCCGATGTTT
TTATACCGAAAGGTTATTTTCAAAACATTGAAGAGATTAAAAACTTCGAA
TTTTTTGAAGATGATACAGTTATATGTGGATTTCTTAAAACAGGAAGGTC
ATAGTTCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAG
GGACAAGCTGGATCGTGGAAGGCTTTGTTTACACCAGAGATGACAAAACA
AATGGAAGAATGGGAATCAAAATGGTTGAGAGATACTGATCTTGAACTTA
TTTATGAATAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAG
TCCCTTCACGGTCACTTCTATACACTCTACGATGACTTTTCTGGATCTTT
ACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATGTTATTCTGGTC
CGTTTTTTAGACACGTTTTGGGATACTGGAAGCGACGCTCTTATGAAAAT
ATACTCATCATCTTTTACGAAGAAATGAAAAAAGATTTATCAGGTCATAT
CAAGAAGATTGCTGATTTCTTAGACATTAAAATTTCAGATGAGGAAGTAT
CAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAG
CAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGGAGATT
TCGATAGTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCCATGAAA
CGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAAGACA
GTTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAGAGGATTGTTTG
GGCACTCCGTAATGATATAAAATTGAATATTCAACATGCACCCCCTGTAT
CAGTTTTCGAATGGACGAGGGTGAAGACATACAAGAATATCATAGCGAGA
CATTGGAAAGCAAATTTTTTGCTCCCTTTGCAAATATACCTTACGTTTCT
AATGTACATTACGCTCGGCCTTCCGATGTTTTTATACCGAAAGGTTATTT
TCAAAACATTGAAGAGATTAAAAACTTCGAATTTTTTGAAGATGATACAG
TTATATGTGGATTTCTTAAAACAGGAAGGTCATAGTTCAACAGTCGAAGC
AGCTCACAAGGGAAAGACAATGTTTAACAAGGGACAAGCTGGATCGTGGA
AGGCTTTGTTTACACCAGAGATGACAAAACAAATGGAAGAATGGGAATCA
AAATGGTTGAGAGATACTGATCTTGAACTTATTTATGAATAGATGATTTA
CATGCTTCGAAACCCAAGAGATGTTTGCCAGTCCCTTCACGGTCACTTCT
ATACACTCTACGATGACTTTTCTGGATCTTTACAAGATGTTGTTAATCTC
ATGACCGATGATGCTGGATGTTATTCTGGTCCGTTTTTTAGACACGTTTT
GGGATACTGGAAGCGACGCTCTTATGAAAATATACTCATCATCTTTTACG
AAGAAATGAAAAAAGATTTATCAGGTCATATCAAGAAGATTGCTGATTTC
TTAGACATTAAAATTTCAGATGAGGAAGTATCAAATCTGGCCAAACATTT
TTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATG
CAAAGCAGCATTGTTATGGGTATAGGAGATTTCGATAGTGACAACAACAA
AGCTAACGATGAGATTTTTTCGTCCATGAAACGACCACGTGTTATCAAAA
TGCATCTTTCATATGAATTATTACCAAGACAGTTTCAACAAAAGCAACCT
AAGGTACGAATTGGTGCGAGAGGATTGTTTGGGCACTCCGTAATGATATA
AAATTGAATATTCAACATGCACCCCCTGTATCAGTTTTCGAATGGACGAG
GGTGAAGACATACAAGAATATCATAGCGAGACATTGGAAAGCAAATTTTT
TGCTCCCTTTGCAAATATACCTTACGTTTCTAATGTACATTACGCTCGGC
CTTCCGATGTTTTTATACCGAAAGGTTATTTTCAAAACATTGAAGAGATT
AAAAACTTCGAATTTTTTGAAGATGATACAGTTATATGTGGATTTCTTAA
AACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034783	XLOC_034783	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055227-protein	TCONS_00055227-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:459711..465434 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96444	2.97611	1.72809	1.77505	0.256227	0.142556	0.345683	0.599314	0.535937	0.287039	0.76708	0.542646	0.220368	0.426973	0.960885	0.638821	0.121138	0.330334	0.220731	0.158618	0.728158	0.659104	5.28804	6.27043	2.52915	2.30113	57.7545	68.0238	0.91155	1.19904

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000863	Sulfotransferase_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0008146	sulfotransferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008146	sulfotransferase activity

Blast

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BLAST of TCONS_00055227 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.941e-25
Identity = 78/273 (28.57%), Postives = 129/273 (47.25%), Query Frame = 2

Query:  182 DDTVICGFLKTGTNWCERIVWALRNDIKL-NIQHAPPVSVFDIV-MGIGDFDSDNNKANDEIFSSMKRPRVIKMHLSYELLPRQFQQKQPKMIYMLRNPRDVCQSLHGHFYTLYDDFS--GSLQDVVNLMTDDAGCYSGPFFRHVLGYWKRRSYENILIIFYEEMKKDLSGHIKKIADFLDIKISDEEVSNLAKHFSFDSMKRKAEQMIPFHAKQEGHSSTVEAA---HKGKTMFNKGQAGSWKALFTPEMTKQMEEWESKWLRDTDLELIYE 979
            DD +I  + K GT W + IV  ++N+  +   + AP    F  + M I    S   +A+     +M  PR++K HL + LLP    +K  K+IY+ RNP+D   S + HF  +       G+ ++          C+ G +  HV G+W+ +    IL +FYE+MKK+    I+K+A+F+  K+ D+ +  +  + SFD MK+              + S++ A    H       KG  G WK  FT    ++ +E   K + DT L   ++
Sbjct:   46 DDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAH-----AMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYY-HFQRMNKALPAPGTWEEYFETFLAGKVCW-GSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNP----------MANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQ 301

The following BLAST results are available for this feature:

BLAST of TCONS_00055227 vs. Swiss-Prot (Human)

BLAST of TCONS_00055227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ST1C4	1.941e-25	28.57	Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE...	[more]

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TCONS_00055227 (transcript) - C. hemisphaerica