TCONS_00055238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055238
Unique NameTCONS_00055238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055238 ID=TCONS_00055238|Name=TCONS_00055238|organism=Clytia hemisphaerica|type=transcript|length=945bp
taaaaacaaaacaacaatgaATCGAGGCAAAGTTGGACCAAAAGAGTAAT
CAGAGAAGagagaaaaattaatttaatttcagAACATTGAATCGGGGATT
AGACTGCGTTAACTCTCCTTCATTCGAAGCTCAAAGCTGAGGAACGTCTA
AAGTTCTGGAACCGTCTACACTATACCAGCGGTGTATCGTAGATTACCAA
GTTATCGCTTCTAGCACCTACCAAAAGCATCACGTCGCGTTAGTCGAGAA
CAACAGCTTCGCATTATGGACTGGTATCGAATCTTGATACATTGCGCTTT
CATAATACAAGTTTACAGTGAAGTAATAAACGAAAAGCAATGCCAACTGT
ACGCTGGAATTTTCGATTTGGTTGTGAAAGGGAAACTGGATATTACTCCA
TATCAAATATATGGTTCATTTACACTAACCCAATGTATTTCAAAATGTGT
TCATTATGAAGGTCTCGACGACGGGCAAATTCAAAGATGCAAATCGTTTA
ATTATAACCCAACCGATCAAAATAATAATTGTGAGCTTTTAGGTGAAGAC
ATGAAAGATTTCTTGATGGAACACATCTTTGTTGAACAAGCTGACAGTTA
TGTGCCAAAATACAAACCAAACGAAGAAGGATGGTTACATTACAGTGAAA
GTCCAAACGCTAAACTGCGTGGTCCAACATGTATGGCAAAAGCAAAGGAA
ACAGGACAGAATCCATGCAGAGATGGTGTTTGCACTGACTCATGTGAAGA
TCAAAGAGGATACACTTGCGCATGCGCGTCTTTTATACAGAGTCAATCCA
TGGATAGAACTTGTAAAGTTATGAAACCATTGATGCCATGTTATTTAACT
AAAATGAGCAGCCCAGTAAATAATGGAGACACTATGATTGAAGTCCAAGG
GAATAGTGGCAATTCCATCTTTTTTGTTGACAATGGTGTATTCCC
Run BLAST on NCBI

protein sequence of TCONS_00055238-protein

>TCONS_00055238-protein ID=TCONS_00055238-protein|Name=TCONS_00055238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MDWYRILIHCAFIIQVYSEVINEKQCQLYAGIFDLVVKGKLDITPYQIYG
SFTLTQCISKCVHYEGLDDGQIQRCKSFNYNPTDQNNNCELLGEDMKDFL
MEHIFVEQADSYVPKYKPNEEGWLHYSESPNAKLRGPTCMAKAKETGQNP
CRDGVCTDSCEDQRGYTCACASFIQSQSMDRTCKVMKPLMPCYLTKMSSP
VNNGDTMIEVQGNSGNSIFFVDNGVF
Run BLAST on NCBI

transcript from alignment at scaffold_251:672425..675561-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055238 ID=TCONS_00055238|Name=TCONS_00055238|organism=Clytia hemisphaerica|type=transcript|length=3137bp|location=Sequence derived from alignment at scaffold_251:672425..675561- (Clytia hemisphaerica)
TAAAAACAAAACAACAATGAATCGAGGCAAAGTTGGACCAAAAGAGTAAT
CAGAGAAGAGAGAAAAATTAATTTAATTTCAGAACATTGAATCGGGGATT
AGACTGCGTTAACTCTCCTTCATTCGAAGCTCAAAGCTGAGGAACGTCTA
AAGTTCTGGAACCGTCTACACTATACCAGCGGTGTATCGTAGATTACCAA
GTTATCGCTTCTAGCACCTACCAAAAGCATCACGTCGCGTTAGTCGAGAA
CAACAGCTTCGCATTATGGACTGGTATCGAATCTTGATACATTGCGCTTT
CATAATACAAGTTTACAGTGAAGTAATAAACGAAAAGCAATGCCAACTGT
ACGCTGGAATTTTCGATTTGGTTGTGAAAGGGAAACTGGATATTACTCCA
TATCAAATATATGGTTCATTTACACTAACCCAATGTATTTCAAAATGTGT
TCATTATGAAGGTCTCGACGACGGGCAAATTCAAAGATGCAAATCGTTTA
ATTATAACCCAACCGATCAAAATAATAATTGTGAGCTTTTAGGTGAAGAC
ATGAAAGATTTCTTGATGGAACACATCTTTGTTGAACAAGCTGACAGTTA
TGTGCCAAAATACAAACCAAACGAAGAAGGATGGTTACATTACAGTGAAA
GTCCAAACGCTAAACTGGTAAGTTGTGTTAGATTACTAGCTGGTACACAA
CGTTGTTTCAACCTTCATCTAACGTTATATGGACGTTATGAACATTAGAT
AAACGTTGAAACAATGTTGTGAGCCAGCTGGGTTACTACGGCCCCTGGGC
CCCTGGGACTGACTCAGCAGCATGGCCTAGGGCCCTTCAAAGAACATTAA
CAGGGTCGACAGAAGAAAAGATACCAGTCAGATTGGGCTGTTCCATTAAA
AATCAATAGGGGGAGGGGGGTGGGGGTGAAAAATCTTTTTTCAAAATGTG
TGAATACCACCTGGAAAATGGCAAAATTTGCAAAGAAATCCTTGGAAAAA
TTCTTTTCATATCTTAAAAGTGAGCGTGGACGAACTTAAGTCTTTTACCC
TCTAGAAATTTTTAGAATAACATTTCACCCCTGTAAATTCCTCTCAGACT
ATATCCCTTGGAAATGTTCGTGCACCACCACCCCTTTTATGGATATAAAA
AGGAATCACCCATTGCACGTTAAAGCTAGAAATATTTCTTCAACCCCTAT
TATAAAGGGAACTAGGTCTTACTTTAATCGTAGAAATTTTAGCGAGACCA
ATTTTAGCGTATATTAGCGAGTCAGGAAAATCTTGATTTTTTTAGGATTT
ATTTTAGCGAATCACGATTTCAAAAAATTTCGCGTGGATAAATTTTAGCG
AATACTCATATTACATTATTGATTTAATTCGTTTTCTAGCATTTCTTTGC
ACTGAAACCCTTCCTACTGATAAAAATGTATCAAGGCAATATAACCAGAA
ATTTCGCGAGGATAAATTTTAGCGATCTGTCGATTCGGCGTGTTTTAGCA
AGATTTATTTTAGCGAAAATAGGGAAAACTCGCTAAAACGCTAAAATTAG
TCTCGCTAAAATTTCTACGATTAAATTAGTAAGAACGATAGGATTATTTT
ATCCACAGGGTTTTAGGGAAATATTGTTAAATATATCACCCATATCGTTT
TTGAAAATTCATACACACTTTTCTCATATGAGAACAATTTTATAAGAATA
TAAGAACTATTATACAAGAATAAAGCTTGGCCTGAAATGTGATACAGATG
TGATATAAAACGATATACTCCGCGGTATACAAAAGTTTACTCACCCAGTT
GCCACACAACGTTGTTTCAACGTTTATCTGACGTTTTATGGACGTTGTGA
ACATTAGATAAACGTTGAAACAGCGTTTTGTGGCAGCTGGGGGTTCTAAT
AAAACAATAGCCTATACTAGACGACACGGCTTTTTCACTACGCAGTAACG
TCTATTTGCGTCAAAGCACTTGAAAGGCTTCTATTATTCGAAAATCATCA
AAGTGGAACTCATTAAGAAACGGGATGAATAATCACGGTTTTTGGCGAGG
TGATCGCCAATAAAACAACAGTGTATTATTTTTTATTCAGCGTGGTCCAA
CATGTATGGCAAAAGCAAAGGAAACAGGACAGAATCCATGCAGAGATGGT
GTTTGCACTGACTCATGTGAAGATCAAAGAGGATACACTTGCGCATGCGC
GTCTTTTATACAGAGTCAATCCATGGATAGAACTTGTAAAGTTATGAAAC
GTAAGCGTGCATACCTTAATCCTATAAATTTTGGCGCACCTTTTATTTTT
GCGCACCTCCTAATATAGGATAACCGTACAACCTTAATTTTTTTTCGCGA
TTTACATGAAGTAGATAAATTTTTGCAAGCAGATATTTTCGTGAGATGGT
TTCTTAAAAAAGTAAAAAAGTAATTTTATTTTCGAGGGAGTTATTTTCGC
GAGTAGTACCCTTTTTCCAACAAATTTTTGCAAGGGTTTTTGCAGAAATC
TTTGACGTTACTGTAAAAACACTGGTTCTTAAAATTTTTGTGAGCATTTA
AATTTCGCGAATTTTCGGTTAAACTTACGAAACTCGCGAAATATAATCGT
CGCGAAAATTAATCCACGAGGTAATAAAATTCTATAGAAAATCAGTCTTT
TCTGTTTCCAGTTTCTGTTTACAATCATGGTCGTAATATTTGAGAAAAAA
GGAAATCCTTACAACCACAAACGATTTGGAAGCGTTCTAAATTAGGTCGG
AAGGGTAAAGTTTTAACTCTGAGTCTCAACGCTAGACTTAATAGGGCTTA
AAATATAGCCTGGAAGTCTATACAAACTCCACTCCCGAATTGGAATACTC
GAATAAATTTATCAATTAGCCCAAAAGCGACATTTCTCTCCCGAACTCCA
AATTTCAAAAAACAAGAAAATAAGCTAAATTCTCAATAGATTTTGACCAT
GATTGTAGATAATATTTAAGATTGTTTTATTGGTACTCTGATTATGTCTA
GTTCCATATTACATTTTAGCATTGATGCCATGTTATTTAACTAAAATGAG
CAGCCCAGTAAATAATGGAGACACTATGATTGAAGTCCAAGGGAATAGTG
GCAATTCCATCTTTTTTGTTGACAATGGTGTATTCCC

Coding sequence (CDS) from alignment at scaffold_251:672425..675561-

>TCONS_00055238 ID=TCONS_00055238|Name=TCONS_00055238|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_251:672425..675561- (Clytia hemisphaerica)
CATTGATGCCATGTTATTTAACTAAAATGAGCAGCCCAGTAAATAATGGA
GACACTATGATTGAAGTCCAAGGGAATAGTGGCAATTCCATCTTTTTTGT
TGACAATGGTGTATTCCGTGGTCCAACATGTATGGCAAAAGCAAAGGAAA
CAGGACAGAATCCATGCAGAGATGGTGTTTGCACTGACTCATGTGAAGAT
CAAAGAGGATACACTTGCGCATGCGCGTCTTTTATACAGAGTCAATCCAT
GGATAGAACTTGTAAAGTTATGAAACATGGACTGGTATCGAATCTTGATA
CATTGCGCTTTCATAATACAAGTTTACAGTGAAGTAATAAACGAAAAGCA
ATGCCAACTGTACGCTGGAATTTTCGATTTGGTTGTGAAAGGGAAACTGG
ATATTACTCCATATCAAATATATGGTTCATTTACACTAACCCAATGTATT
TCAAAATGTGTTCATTATGAAGGTCTCGACGACGGGCAAATTCAAAGATG
CAAATCGTTTAATTATAACCCAACCGATCAAAATAATAATTGTGAGCTTT
TAGGTGAAGACATGAAAGATTTCTTGATGGAACACATCTTTGTTGAACAA
GCTGACAGTTATGTGCCAAAATACAAACCAAACGAAGAAGGATGGTTACA
TTACAGTGAAAGTCCAAACGCTAAACTGCATTGATGCCATGTTATTTAAC
TAAAATGAGCAGCCCAGTAAATAATGGAGACACTATGATTGAAGTCCAAG
GGAATAGTGGCAATTCCATCTTTTTTGTTGACAATGGTGTATTCCGTGGT
CCAACATGTATGGCAAAAGCAAAGGAAACAGGACAGAATCCATGCAGAGA
TGGTGTTTGCACTGACTCATGTGAAGATCAAAGAGGATACACTTGCGCAT
GCGCGTCTTTTATACAGAGTCAATCCATGGATAGAACTTGTAAAGTTATG
AAACATGGACTGGTATCGAATCTTGATACATTGCGCTTTCATAATACAAG
TTTACAGTGAAGTAATAAACGAAAAGCAATGCCAACTGTACGCTGGAATT
TTCGATTTGGTTGTGAAAGGGAAACTGGATATTACTCCATATCAAATATA
TGGTTCATTTACACTAACCCAATGTATTTCAAAATGTGTTCATTATGAAG
GTCTCGACGACGGGCAAATTCAAAGATGCAAATCGTTTAATTATAACCCA
ACCGATCAAAATAATAATTGTGAGCTTTTAGGTGAAGACATGAAAGATTT
CTTGATGGAACACATCTTTGTTGAACAAGCTGACAGTTATGTGCCAAAAT
ACAAACCAAACGAAGAAGGATGGTTACATTACAGTGAAAGTCCAAACGCT
AAACTGCATTGATGCCATGTTATTTAACTAAAATGAGCAGCCCAGTAAAT
AATGGAGACACTATGATTGAAGTCCAAGGGAATAGTGGCAATTCCATCTT
TTTTGTTGACAATGGTGTATTCCGTGGTCCAACATGTATGGCAAAAGCAA
AGGAAACAGGACAGAATCCATGCAGAGATGGTGTTTGCACTGACTCATGT
GAAGATCAAAGAGGATACACTTGCGCATGCGCGTCTTTTATACAGAGTCA
ATCCATGGATAGAACTTGTAAAGTTATGAAACATGGACTGGTATCGAATC
TTGATACATTGCGCTTTCATAATACAAGTTTACAGTGAAGTAATAAACGA
AAAGCAATGCCAACTGTACGCTGGAATTTTCGATTTGGTTGTGAAAGGGA
AACTGGATATTACTCCATATCAAATATATGGTTCATTTACACTAACCCAA
TGTATTTCAAAATGTGTTCATTATGAAGGTCTCGACGACGGGCAAATTCA
AAGATGCAAATCGTTTAATTATAACCCAACCGATCAAAATAATAATTGTG
AGCTTTTAGGTGAAGACATGAAAGATTTCTTGATGGAACACATCTTTGTT
GAACAAGCTGACAGTTATGTGCCAAAATACAAACCAAACGAAGAAGGATG
GTTACATTACAGTGAAAGTCCAAACGCTAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034789XLOC_034789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055238-proteinTCONS_00055238-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055238-exon-scaffold_251-1575043694:674895..675561TCONS_00055238-exon-scaffold_251-1575043694:674895..675561Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1575043694:673312..673471TCONS_00055238-exon-scaffold_251-1575043694:673312..673471Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1575043694:672425..672542TCONS_00055238-exon-scaffold_251-1575043694:672425..672542Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1510915933:674895..675561TCONS_00055238-exon-scaffold_251-1510915933:674895..675561Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1510915933:673312..673471TCONS_00055238-exon-scaffold_251-1510915933:673312..673471Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1510915933:672425..672542TCONS_00055238-exon-scaffold_251-1510915933:672425..672542Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1491911889:674895..675561TCONS_00055238-exon-scaffold_251-1491911889:674895..675561Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1491911889:673312..673471TCONS_00055238-exon-scaffold_251-1491911889:673312..673471Clytia hemisphaericaexon
TCONS_00055238-exon-scaffold_251-1491911889:672425..672542TCONS_00055238-exon-scaffold_251-1491911889:672425..672542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:672425..675561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.289221	0.0940119	0	0	0.13001	0.308207	0.123946	0	0.0406201	0	0.0976731	0.0963097	16.0293	13.3839	4.65316	3.143	0.578978	0.407986	37.15	27.9362	2.33029	1.90955	0.60796	2.00991	1.29385	2.26327	0	0.07054	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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