TCONS_00055253 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055253
Unique Name	TCONS_00055253
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	769

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_251:905399..919502-

transcript sequence

>TCONS_00055253 ID=TCONS_00055253|Name=TCONS_00055253|organism=Clytia hemisphaerica|type=transcript|length=769bp
ccccctaggttgaagaaaatttcgaattcaaatcgtttggttcggacctt
tatttcatacatgaaactcaatgcttATCAAGAAACCTTTATCTTTCCTT
GATGCGTAACAAGCggaaaagtcgacaaaaaaacagcGAAATAGggctta
aaaaaaaattctctgcgtacgtacattttcctttgaaaaatgttaaatgA
GGTTTATATGACTTCAATATCTTTGTTTGAAATGACTTTTCTGattgtca
ctttttttaaaaagggttCAATAGCCATTCTAACGATTAACCAATCGATG
ATCTTCCGACATATGCTAAGGATACTGacaggcaaaaacaaaacaacgaA
CCAAGTATACTCTTCTAGAAACTTTTCAAGACCGGTAGAACTTAGATTGA
TAACTATCTCTCTGTCAATGTTGATTCCATCCAGTTTGATTATGCTTATT
GTTTTGATCTCACCATTCAGGCACATTTCAGGTAACTCGTCCAAAAGATT
TTGAACATGTTGTTGATATGATTTTTCTGTTTCCTTATCATCAAACTGAA
TATCGAATTCaatcttctgaaaattctgctccttttcaatattctcAATC
AAAACTTCATCAATCTGACTCAAATCAATCCAATGTTTATATTTGAAAGT
CTTATTTTCTCTCCAAATGACTTTTCttgttttccaaaatttccagatCG
GTTTTGGTTCTCTCACTTCACAATTTGTTATAACTTCAGGCGCTGTTCGT
ATGTTTTGTTGGATTTTGT

Run BLAST on NCBI

transcript from alignment at scaffold_251:905399..919502-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055253 ID=TCONS_00055253|Name=TCONS_00055253|organism=Clytia hemisphaerica|type=transcript|length=14104bp|location=Sequence derived from alignment at scaffold_251:905399..919502- (Clytia hemisphaerica)
CCCCCTAGGTTGAAGAAAATTTCGAATTCAAATCGTTTGGTTCGGACCTT
TATTTCATACATGAAACTCAATGCTTATCAAGAAACCTTTATCTTTCCTT
GATGCGTAACAAGCGGAAAAGTCGACAAAAAAACAGCGAAATAGGGCTTA
AAAAAAAATTCTCTGCGTACGTACATTTTCCTTTGAAAAATGTTAAATGA
GGTTTATATGACTTCAATATCTTTGTTTGAAATGACTTTTCTGATTGTCA
CTTTTTTTAAAAAGGGTTCAATAGCCATTCTAACGATTAACCAATCGATG
ATCTTCCGACATATGCTAAGGATACTGACAGGCAAAAACAAAACAACGAA
CCAAGTATACTCTTCTAGAAACTTTTCAAGACCGGTAGAACTTAGATTGA
TAACTATCTCTCTGTCAATGTTGATTCCATCCAGTTTGATTATGCTTATT
GTTTTGATCTCACCATTCAGGCACATTTCAGGTAACTCGTCCAAAAGATT
TTGAACATGTTGTTGATATGATTTTTCTGTTTCCTTATCATCAAACTGAA
TATCGAATTCAATCTTCTGAAAATTCTGCTCCTTTTCAATATTCTCAATC
AAAACTTCATCAATCTGACTCAAATCAATCCAATGTTTATATTTGAAAGT
CTTATTTTCTCTCCAAATGACTTTTCTTGTTTTCCAAAATTTCCAGATCG
GTTTTGGTTCTCTCACTTCACAATTTGTTATAACTTCAGGCGCTGCTCGT
ATATTTTGTTTGATTTTATCTTCCCAAGCAATCTTTCTTTCATGGCTTCC
TTCAAAAATTAATCTTAAACCGTCATCACGATATAGCCTAATGGCTGCAA
TAACTGTGTGACTAAATGACAACACTGCCCATGCTCCGAAAATAGATTTC
ATAATCGACGACTCAACACAAAGGGTTCCAAGCAAAGCAAAACAAAACTC
TAAAACGGAGAAAAAGAAGTTTTATTTACCTATATGAATCTGCTCTATAT
CAACAACCAGTCAGCAACACTATACAGAAATGGTAAGTATTAGCTTAACG
GGAAATACTTCCCGAACGGGAAGGTGGAAAAAATCCCGAAACATCTTTTG
TTTCCAAATTGGATAAGAAGCAAGTTTCCTGTTTGAGAAAATTGGCTTTA
AACACTCGGGAAATGGTCCTGGAGAAAAGGCAAATAACTGTTCGCCCTGG
TTAAATAAATAAGTAAGAAGAGTAGACTCTTCTTAATACCTTTTTTGTCT
ATTTTTTTTTCACTGATTTGGCAGTTACTTCCCCGAAATAAATGCGTAGT
GGAAAATCGAAAATGGCGGTCATAAAATGTGTTTAATCAGGAATTTATTT
CTTTTTTGGGCATGACCATAGTTACTAATTTAAAGTATGGTAGCTCTAGC
CAATTCGATATAATTCTGTCTCGATCAATTCAAATGAACTAAAGGTCTTT
GCAAACTCCAATCCAGTCCTCCCAGTAAAATTAAAAAGTTTTGTAAGTTG
CTCTGGGTACCAGATTGAGTTCCTTGGCATCACACACATAGCTTTTGATG
ACAATGAAAAATAAATATTTTGGGAGCCCAAAAAATGCATTGAATATAAA
GCTGCATCTGGTACATTTACTTTTGTAGAGCGTAATGACAATAAAACTTT
ATGTATACTTACGCCATTGCAAGACCTTCAAACGTTTACATTCGAAATCA
TTTTGACAAATAGCTGCAAAAACTCCATCAAATAAATGGAAGACAATATA
CACTCCAGTAGCAACACTTGCTTCAGCGGGGTGGTTGATATATCCAAAAA
ATCCGCCACCCATAATAAGAATACCCAAAACAAAAAAAGCAACATAATAA
TATCCACATAAAGAGTCTCCCATTTTTATTGTCTCTTTTGCGTGCCTGGT
CTACTAAAATACAATTGTAGTAATATGCAGTGTTATATTTCCTACTTTCT
GTAATCTAATCAACGCGTTTCTGTTAATTAGAATTACTGTGTGTAATTGC
ATTTTAATGGTAGATAATTTGTTATACGGAATTGCTTAAGTAACATAGGC
ACACAAAAGGACAAAAACTGTCTGTAATGTATTAATGTATTATTCATTGG
TTTATGGGGTTTTGTTGTTTGTATTTTGGGCGTTTATTTTGGATTTAACA
ACCCCTCTGAAGGAGGTTTTGCCATTGGAGTGTATATTGTGTTCCATTTA
ATTGATGGAGTTTTTGCATCTTTTTGTCGCCACAAAAATGATTTAAAATG
CGTACGTTTGAAGGTCCTGCAATGGCGTAAGTGTACATAAAGTTTCCCTT
TTTAATCTTTTTATTGTCATTACACGTTTTTTTTTTTTATAAGAACGTCA
AAAATTTTCAAAGCCTTCGGATGTTCTTAGTTTTTTGGNNNNNNNNNNNN
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AGCAACAACAAACTCTCAAAATAAAATCAACTCAAATGAAACATTTTTAA
CACACAAATCCACACACATTTTATTTTCAAGAATTTTTTTTGAGCCGGGA
AAAATTTTAATTGCGATATTGACACTTTTTTTTTGTTAAAGTTAAAGAGT
TAGTGCACAAAGGTTTCTAGACGACTAAAATTTACTTTTTTGCTTTATTT
CTAATATGTCTGAATTAGTCGTCTAGCTTGCTAGACTATACATTATGCAG
CTTTAGATTCACTGCATTTTTCGNTTGGAGTTAGTGCACAAAGGTTTCTA
GACGACTAAAATTTACTTTTTTGCTTTATTTCTAATATGTCTGAATTAGT
CGTCTAGCTTGCTAGACTATACATTATGCAGCTTTAGATTCACTGCATTT
TTCGGGCTCCCAAAATATTTATTTTACATTGTCCTAAGGAAGAGGGCTAT
GTGCACAATGTGCTAAATCTGGTACCTAGAGCCACATAAAAACATTTTAA
TTTTACTGGGAGGACTGCGGATTGAAGTTTGCAAAGACCTTTAATTCAAT
GTACATTTGAATTGATCGAGACAGAATTATATCGAAAGGGCTAGAGCTAC
CATAGTCAGCCACATAGCCATTCTCCATAGTAAAAGTTAGTTCCCAGACG
TCATGCTCGAAAATGAAATAAATTCCTGATTTAACACATTTTATGGCTTT
TAGAGGCTACTCTCCTTATTTATATATTTAACAAGGGCGATCAGTTATTT
ATCTTTTTCTCTAGGACCATTTCCGGAGCGCTTAAAGCCAATTTTCTCAA
ACAGGAAACTTGCTTCTTATCCAATTTGGAAACGAAAGATGTTTTCGACC
TTCCTGTTCGGGAAGTATTTCCCGATAAGCTAATACTTACCATTTCTCTA
TAGCGTTACTGACTGGTTGTGGATATAGAGTAGATTCATATAGGTATATC
AAACTTCTTTATCTCTCGGTTTTAGAGTTTTGCTCATCTTTTGATTGGAA
CTATTTTTGTCAAGTCGTCGATCATGAAATCTATTTTCGGAACATGGGCT
GTGTTGTCATTCGGCCACGCAACCATTATGCTACATTGCGATGACGGTTT
AAGATTTACTTTTGGATATTTTCCCCATCCCAAATGAATAATCTTTCTTA
AAACAATGGAATTCAAATCCCCAGCGATTAGAAACAAGGTTATATCAATC
CCCATCGGCCTTCAGTCCTTTATCTTTATCCCCAATCCTACCGGGTCTGT
GAGAACGGGTTGTTTTCAGAGGGAATCAATTTTGGCGGATGGCTTGAAAA
ATTAAATTTGGCTGGATAAAGGATATTTTTGTCCAAAAACTTCAATCAAA
TAAGAAATTCCCTGAAATAGCACACATTTGGGGGAATAAATGCAGTAATT
TTAATTTGGCGAATGGCCGGAAAAATAAATTTGGTGGGAACTTAATTTTG
ACCAAATCCGCCAAATCCGCCAAATCCACCAAATCCGCCAAATTTTGTTC
CCTTAAGGCACTTCCAGAACAAACAGACCAAGATAACGTGGAGCTTAATA
ATTTGACTATTTCTTTATTTTTCTTTCTTCTAGAACTGTCTGCAAGTCTC
TTGGCAGCAATCTTGATAGAAGAATCACTTATTCGCATTATTTTCATATC
ATGGAGTGTGCTCACAACAATTTATATATTCGTTCTTATAATAACGAAAG
TATTCCAACAATATTGGTATGGCAAAGAGAATTTCTTTATTCAAAAACAA
ACTCTACCAGAATTTATTGAAGAACAAATAAATACTGATCCACAAATCAC
AATTCGTTGTAAAGCTTTTCGACCAAAATCGATTTGGAAATTTTGGCAAT
CTAAAGAAGTAATTGGTAATGATGCTAAAATATTTGTCGACTACGAAAAT
TGTATTGATTTGATTGATCAAATTTCCATTGAAGGTTACACGAAGACATG
GCGAGTAATTATAGACTTTAAAATTGATTTTGAAGAGCAAATAGAGACAC
TCTATTTTCGAACGAGCAAACAATTTATTGATGATTTCCAAAAGAGCTTG
CCAGAGGAGCCAGAGGAGTACCAAGAAGACTCTGAGATTGCAGTCAAATA
CAACATCACATTCAGCAGACAAAATAAGACTGTAATTTGTTTAACAAAAG
GAATCTTTTGAAATGTTTTTCTGGATTTTAGGTATTCCAGGACTTATGTT
GGAAGGTTTGCTATTGTTTGATGAGGATTGTGGAAGTTGGTATTTTACCA
AACGAATAACTATTCAAAAGAAAATATTTTGATAGAAAATTTCATTTGAA
AAATGTTTCTTAAATAAGTTGTTTCAATCGATAACGTTAGAAAAATAAGA
GAGCGAATGACTCTCTCTAATTCGAACTTCAAGGGCCCGAGAATTTTCTT
CAGATAATAGAAAGATTCGAATTATAGAAAGTATTTTATACTTATTTCTA
GCTGAGAGGACCAATACTTAGTTCGAATTATAGAAAAATTCGAATAATTG
TTGAGGCTCGAATAAGAGAGGGCTGACTGTATACGAGAATTAAATTTTGT
CAATATATAAAGACCAGTATGCCCCTTTTTTAATCCACAAGAGTTGTATC
AAGAATATTTAAAGCATCGTAAAAACAGGGTATTTTATTGAGGGAATTTT
GGGCGACTGGAAAATTCAGAGATAATTTCCCAATTTCAGTCCCATCCGGG
GTATCGTTTTACGCAAATTTCAAAAAGTCAACGAGTGGCTTTCCCTGGGG
GAGACTGGAAATTGACATTTACTATTAATTTAAAAAAAATACAAAGAAAA
TAGTTAAATAAAACTTTCTACTGAGTTTTTATTGTGTACCAGGTTTTTTT
TTTCAATTTTTTTAAAGTCATATGGGGCCGTCCACATAACGTACGCACTG
AAATGTCGAAAATCGAGTACCCTCTCCCCCCCCCCTGTACGCAAGCGTAC
ACAAATGGCTATACCCCCTCTTCTAAGTACGTACTTTTTCATTCACCCCC
CCTTCGGNCGAGTCCCCCCCCCCCCCCCCCTGTACGCAAGCGTACACAAA
TGGCTATACCCCCTCTTCTAAGTACGTACTTTTTCATTCACCCCCCCTTC
GGTTGAAAAAAATTTCGAATTCAAATCGTTTGATTCGGAGAAAGGGTTTT
ATTTCATACATGAAACTCAATGCTTATCAAGAAACTTTTTCCTTTCCTAG
ATGCGTATAACAAGCGTAAAAGTCGACAAAAAACAGCGAAAAAGGGCTAT
GAAAAAAAATTCTCTACGTACGTACATTTCCCTTTGACCCCTCCCCTTCC
CCTGTACACAAACATACACTTTTTAAGAAGAACCCCCCTCCCCCTTAGTG
CATACGTACTATGTGGGCGGCCCCTATAACGAAACTAGTTCTCGTGTTTA
AAGGCTAAATTTATTTACAGTTGAACAGAAAAGTGATTTTATATGTCTGG
ATCGGGATCATCACGTTAAATATGCAGATCTGTCCACAAAATACTTGACG
TGAAGTTCAAGTGAGATTTATATGACTTCAATATCTTTGTTTGAAACAAC
TTTTCTGATTGTTACCTTTCGGAAAAAGGGTTCAATATCCATTCTAACGA
TTAACCAATCGATGATCTTCCGACATATGCTAAGGATACTGACAGGCAAA
AACAAAACAACTAACCAAGGATACTCTTCTAGAAACTTTTCAAGACCGCT
GGAACTTAGCTTGATAACAATCTCTCTGTCAATGTTGATTCCAATGTTGA
TTCCATCCAGTTTGATTATGCTTTTTGTTTTGATCTCACAATTCCGACAC
ATTTCAGGTAACTCGTCCAAAAGATTTTGAACATGTTGTTGATATGATTT
TTCTGTTTCCTCATCATCAAATTGGATGTCGAATTCAATCTTCTGAATAT
TCTGCTCCTTTTCAATATTCTCAATCGAAACTTCATCAATCTGGCTCAAA
TCAATCCAATGTTTATATTTGAAAGTCTTATATTCTCTCCAAATGACTTT
TCTTGTTTTCCAAAATTTCCAGATCAGTTTTGGTTCACTTACTTCACAAT
ATGTTACAAATTCAGGCGCTTTTCGTATGTTTTGTTTGATTTTGTTTTCC
CAATCAATCCTTGTTTCATTGATTCCTCCAAAAGTTAATCCTAAACTGTT
TAAACCGTCACCGCAATATAGCCTAATGGCTGCAATAACTGTGTGACTAA
ATGACAACACTGCCCATGCTCCGAAAATAGATTTCATAATCGACGACTCA
ATACAAAGGGTTCCAAGCAAAGCAAAACAAAACTCTAAAACGGAGAAAAA
GAAGTTTTATTTACCTATATGAATCTGCTCTATATCGACAACCAGTCAGC
AACACTATACAGAAATGGTAAGTATTAGCTTAACGGGAAATACTTCCCGA
ACGGGAAGGTGGAAAAAATCCCGAAACATCTTTTGTTTCCAAATTGGATA
AGAAGCAAGTTTCCTGTTTGAGAAAATTGGCTTTAAACACTCGGGAAATG
GTCCTGGAGAAAAGGCAAATAACTGTTCGCCCTGGTTAAATAAATAAGTA
AGAAGAGTAGACTCTTCTTAATACCTTTTTTGTCTATTTTTTTTTCACTG
ATTTGGCAGTTACTTCCCCGAAATAAATGCGTAGTGGAAAATCGAAAATG
GCGGTCATAAAATGTGTTTAATCAGGAATTTATTTCTTTTTTGGGCATGA
CCATAGTTACTAATTTAAAGTATGGTAGCTCTAGCCAATTCGATATAATT
CTGTCTCGATCAATTCAAATGAACTAAAGGTCTTTGCAAACTCCAATCCA
GTCCTCCCAGTAAAATTAAAAAGTTTTGTAAGTTGCTCTGGGTACCAGAT
TGAGTTCCTTGGCATCACACACATAGCTTTTGATGACAATGAAAAATAAA
TATTTTGGGAGCCCAAAAAATGCATTGAATATAAAGCTGCATCTGGTACA
TTTACTTTTGTAGAGCGTAATGACAATAAAACTTTATGTATACTTACGCC
ATTGCAAGACCTTCAAACGTTTACATTCGAAATCATTTTGACAAATAGCT
GCAAAAACTCCATCAAATAAATGGAAGACAATATACACTCCAGTAGCAAC
ACTTGCTTCAGCGGGGTGGTTGATATATCCAAAAAATCCGCCACCCATAA
TAAGAATACCCAAAACAAAAAAAGCAACATAATAATATCCACATAAAGAG
TCTCCCATTTTTATTGTCTCTTTTGCGTGCCTGGTCTACTAAAATACAAT
TGTAGTAATATGCAGTGTTATATTTCCTACTTTCTGTAATCTAATCAACG
CGTTTCTGTTAATTAGAATTACTGTGTGTAATTGCATTTTAATGGTAGAT
AATTTGTTATACGGATTGCTTAAGTAACATAGGCACACAAAAAGGACAAA
AAATGTCTGTAATGTATTAATGTATTATTCATTGCTTTATGGGGTTTTTG
TTGTTTGTATTCCTTTGGGCGTTTATTTTGGATTTAGCCACCCTGCTAAA
ACAGAGTCTGCTAAATCGCGTGCCAGCGTGCTATGCGTGTCAGCGTGCCT
ACGTGTCATGCGTGCCTGCGTGCCAACGTGCCTTGGCGTGCCAACGTGCC
AGCGTGCCAACGTGCCATGGCGTGCCANNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTGTTTTGATCTCACCA
TTCCGACACATTTCAGGTAACTCGTCCAAAAGATTTTGAACATGTTGTTG
ATATGATTTTTCTGTTTCCTCATCATCAAATTGAATATCGAATTCAATCT
TCTGAATATTCTGCTCCTTTCCAATATTCTCAATCGAAACTTCATCAATC
TGGCTCAAATCAATCCAATGTTTATATTTGAAAGTCTTATTTTCTCTCCA
AATGACTTTTCTTGTTTTCCAAAATTTCCAGATCGGTTTTGGTTCTCTCA
CTTCACAATATGTTACAAATTCAGGCGCTGTTCGTATGTTTTGTTGGATT
TTGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_034797	XLOC_034797	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055253-exon-scaffold_251-1575043694:918764..919502	TCONS_00055253-exon-scaffold_251-1575043694:918764..919502	Clytia hemisphaerica	exon
TCONS_00055253-exon-scaffold_251-1575043694:905399..905428	TCONS_00055253-exon-scaffold_251-1575043694:905399..905428	Clytia hemisphaerica	exon
TCONS_00055253-exon-scaffold_251-1510915933:918764..919502	TCONS_00055253-exon-scaffold_251-1510915933:918764..919502	Clytia hemisphaerica	exon
TCONS_00055253-exon-scaffold_251-1510915933:905399..905428	TCONS_00055253-exon-scaffold_251-1510915933:905399..905428	Clytia hemisphaerica	exon
TCONS_00055253-exon-scaffold_251-1491911889:918764..919502	TCONS_00055253-exon-scaffold_251-1491911889:918764..919502	Clytia hemisphaerica	exon
TCONS_00055253-exon-scaffold_251-1491911889:905399..905428	TCONS_00055253-exon-scaffold_251-1491911889:905399..905428	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_251	supercontig	scaffold_251:905399..919502 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.90072	9.42633	3.65924	2.25319	1.28805	0.0735286	0	0	0	0	0	0	2.52014	0.319971	0	1.32124	1.12443	0.966504	0.605455	1.36985	0	0.293107	2.00203	4.76291	0	0	1.75976	2.0488	0.618206	1.64309

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055253 vs. Swiss-Prot (Human)

BLAST of TCONS_00055253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055253 (transcript) - C. hemisphaerica