TCONS_00055254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055254
Unique NameTCONS_00055254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055254 ID=TCONS_00055254|Name=TCONS_00055254|organism=Clytia hemisphaerica|type=transcript|length=1477bp
CTTTAAAACATCTTGAGATATACCAAATCAATAGTGTACAAATTACAGTT
GAGTTAAAGGATTATCAGACGAAGCACTTTAACTTCACTTTATTTTGCTA
GTCAAGGTAACACTGACTCTAGCCCAACTGGAACTGCCTGCATGCAAAGA
CTTTATAGCAAAAGGGGACTGGAACAGAGAGCATGACAGTGCAGTTGGGC
AAACAAGGCAAACAGAAACAAGGGGGGGGCCTTGCTGACTCCAAATGCTA
CATTCATCCAGACACTATCAGATGAGTCAGCAAGGTAGGGAAAACATAAT
AACATAATCTATAATATATAACATGATATcaagtgaacaaaaaagtaaaa
tcaacacagtttgttttttacgatatttcgttctattttcagaacttcat
caGGTAATTTGTATTTTATAATATATTTGTAATACATGATATTATATACT
ATTCTAAAATCATATGCTTTTTCTAATACTATATTACAATGTTTTCTCAT
TTCAGCTATATACAAAATACAAAGACAAAATAACAAAGTTAACAAAGAGT
GATAACTATGGCATCATGTAGTATGGATGATATCCCGACACTCCTATAAT
CAACCTATATATGGCGTTGTCTCTAATGAGATGCGATGAATGGGCAGTTT
TAATAGTACTGGCATTCTGTTGTCTTGTCTCCTTGTCGTTATTTGGAGTT
GATATCTATATATTTTACCGGTACCCAGCAGAAAATGGAATGGTACATGG
CACATTGGTGGTATTTCTCTGCTTAAACCTTTGTTTAAGATATGTTTTTC
AAACAGTATACACAGACAAGAAAAAATACAACCACCTTATACTCAATATA
GAACTGTCGGCAAGTCTCTTGGCAGCAATCTTGATAGAAGAATCACTTAT
TCGCATTATTTTCATATCATGGAGTGTGTTCACAACAATTTATATATTTG
TTCTCATAATAACGAAAGTATTCCACCAATATTGGTATGGCAAAGAGAAC
TTCTTTATTCAAAAGCAAACTCTACCGGAATTTATTGAAGAACAAGTAAA
TACTGATCCACAAATCACAATTCGTTGTAAAGCTTTTCGACCAAAAtcga
tttggaaattttggcaatcTAAAGAAGTAATTGGTAATGATGCTAAAATA
TTTGTCGAATACGAAAATTGTATTGATTTGACTGATCAAAGCTCTATTGA
AGGTTACAAAAAAACATGGCAAGTAATTATagactttaaaattgattttg
aagagCAAATAGAGACACTATATTTTCGAACGAGCCAACAATTCATTGAT
GATTTTCGAAAGAGCTTACCAGAGGAGTACAAAGAAGACTCTGAGATTGC
AGTGAAATACGATATCACATTCAGCAGACAAAATAAGACTGTAATTAGTT
TAAGAAATGAATCTTTGGAaatgtttttctggattttagGTATTCCAGGA
CTTATGTTGGAAGGTTTGCTATTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00055254-protein

>TCONS_00055254-protein ID=TCONS_00055254-protein|Name=TCONS_00055254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MALSLMRCDEWAVLIVLAFCCLVSLSLFGVDIYIFYRYPAENGMVHGTLV
VFLCLNLCLRYVFQTVYTDKKKYNHLILNIELSASLLAAILIEESLIRII
FISWSVFTTIYIFVLIITKVFHQYWYGKENFFIQKQTLPEFIEEQVNTDP
QITIRCKAFRPKSIWKFWQSKEVIGNDAKIFVEYENCIDLTDQSSIEGYK
KTWQVIIDFKIDFEEQIETLYFRTSQQFIDDFRKSLPEEYKEDSEIAVKY
DITFSRQNKTVISLRNESLEMFFWILGIPGLMLEGLLLF
Run BLAST on NCBI

transcript from alignment at scaffold_251:912734..926303-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055254 ID=TCONS_00055254|Name=TCONS_00055254|organism=Clytia hemisphaerica|type=transcript|length=13570bp|location=Sequence derived from alignment at scaffold_251:912734..926303- (Clytia hemisphaerica)
CTTTAAAACATCTTGAGATATACCAAATCAATAGTGTACAAATTACAGTT
GAGTTAAAGGATTATCAGACGAAGCACTTTAACTTCACTTTATTTTGCTA
GTCAAGGTAACACTGACTCTAGCCCAACTGGAACTGCCTGCATGCAAAGA
CTTTATAGCAAAAGGGGACTGGAACAGAGAGCATGACAGTGCAGTTGGGC
AAACAAGGCAAACAGAAACAAGGGGGGGGCCTTGCTGACTCCAAATGCTA
CATTCATCCAGACACTATCAGATGAGTCAGCAAGGTAGGGAAAACATAAT
AACATAATCTATAATATATAACATGATATCAAGTGAACAAAAAAGTAAAA
TCAACACAGTTTGTTTTTTACGATATTTCGTTCTATTTTCAGAACTTCAT
CAGGTAATTTGTATTTTATAATATATTTGTAATACATGATATTATATACT
ATTCTAAAATCATATGCTTTTTCTAATACTATATTACAATGTTTTCTCAT
TTCAGCTATATACAAAATACAAAGACAAAATAACAAAGTTAACAAAGAGT
GATAACTATGGCATCATGTAGTATGGATGATATCCCGACACTCCTATAAT
CAACCTATATATGGCGTTGTCTCTGTGAGTTTTACTTCTAGGAAGTCCCT
TGAGCCAATATTTTTGTTTACCTCAGACATTTTCTTGTTGTGCTTTGGCT
TAGCCATTTTCTTACTCTAATCCTTCGTATACATAATTTCTTTCCCCCTA
ATTGCAACAATTCATCTCTAATCAAGTCAAGTAGCAGAGGGCATGAGATC
TTATAATTCAANCTACATAATTTCTTTCCTCCTAATTGCAACAATCCATC
TCTAATCAACTCAAGTAGCAGAGGGCATGAGATCTTATAATTCAAGATAG
ATTTATTTTACTTAGGCGAGACCAATTTAATTTTTTGTTCTACGGGCAGA
TCGTTAGCAAAATATGGGTCGGTCGGTCGGTAAAATAAAAATGGATTTTT
CAATTATCAGGGTTGGTAAGGTACCGAAAATGTTTTCTAAAAAAAAATCT
GGTTAAAAAATTCACTTAGTGTATGGAATGCTTGATTTTCTAAATTTTTC
AATTTCTTGAATTAATTTTCAGCTTTTTTCAAATTTGATTCTTACAAATA
ACTAGTGTGTAAAATATATTGTAGTGGAAATTCAAAAATACGGTCGGTCG
GGCCCGTAGAACAACAAATTAAATTGGTCTCTCCTTAAAAAAGAAATTTT
TAACCATTGAACTATATGTGTAAGTGTAGATATACCCCTTGGGGTGATTA
AGAGAGAAAGATTATTATTATTATTAATTAGAAATCGATTTCGAATTTCA
GTAAAGTTAAAAATTTATTACCCTTTCGGTGACGATATTTAGGGCCAAAA
TGACGTCATCATCACAAGATTCGCAGTATTTTGAGTTTTGATCTGTTTTA
AGTTGTAATTTTTAGATTTATGGAATTATAGATTTTCGGAATTTCTTTGG
GATTTCGGATTTTCGGGAAAAAAGTACGATATTCTTTTGAGCAGCGGATT
GNAAGTTGTAATTCTTAGATTTATGGAATTATAGAATTTCGGAATTTTTT
TTGGGGATTTAGGATTTTCGGGAAAAAAGTACGATATTCTTTTGAGCAGC
GGATTGATAGCCTTCACCTCTTCTTACATAACTAGTGGGCTTGGGGGATC
TATAGAATCCTTTCGCTTTGCGAACACGAGACTCGTCCTCCGTGCGTAAC
CCCTTTTACGATTGATTGTTATAAGAGAATCCAAAACTTTTGAAGCCTTG
GGATGTTCTTAACTTTTTGGGTTTTAAGTCTAAAAATTTTTCTAAGATGT
TCTTATTTTCACTATTTCTTGGGTGTTTTTGTCCATTTTCCAAAGAAATC
AGGTGTTTTCGAGCCCACAAAGCCTTAAAACGTTTTTAACTTGTTCTTAG
CATTTTTGCCATCGAAGCCTTATGTTCTTATAAACAAAACGTTTACAATG
GTCACGGTTAAGATAATTGTAAAAAAAAAAACTTAAAACAATAGAAGGGG
CAAATCAAACCGATATCATCCCGGAGATTCTTATGTAGGGTTCGGCTCCA
AGTTGGCGCACAACGTTCTTCCAAGGTTTATCTTAAGTTTTGAGAATTTT
TCCACCCCCCCCAGGCTTTTAGGTCCCTGTGAAATATTTATTTAATTCCA
GCGAGAAGTCAACACATTAAAATATATTGGTCATTATTCTTAGAGTCTGC
TAAATCGCGTGCCACGCGTGCCTTCGTGCCAACGTGCCAGCGTGCCAACT
ATCTTGGCGTGCCAACGTGCTAGCGTGCCAACTATCTTGGCGTGCCAACG
TGCTAGCGTGCCAACGTGTCACGACAAAGCACTTACCTATTCGTGACATA
AAAACATGGTATGTCGTTAAATCTACTCTCTGATACCTAATAGCCGGGGC
GCTATGATTAATTTTCCGAAAATTTTCCATCCAGGATATACTTATTCCAT
CCCCCCTCGCATATTAAGTTTTGACATCTTTTCCAACCCCCGGTAGGTAC
CTGAAAGTAAGCCAATGTTGCTTCATCGTTGTTTACTCTACTGTTCAAGA
CTCCAAACTGCTCAAAAAACGACTGAAAATAACATAACATTTGGTGGTAG
TTTAACGTTGATTGGAGCATTTAAGATGAACGCTTTTTTATATAAGAATA
TCTTCTATAAGAATATCAGGGTGAAACTCAAAAGTCCAAAACTATCAATA
TTATTATTTCTCATGTTTGTAAAATAGTCAAGTCCAAAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTCACGACTTTT
TAATTAAGACGAAAAGGATTGTGGGATTGATTTTCGGTCAAGTGTTAAAA
GTAATAATTATGACGTTTGCATAACGGTGTGCTATTAGGATGGCACGCTG
GCACGTTGGCACACCATGGCACATTAGCACGCTGGCACGCTGGTACGCCA
AGGCACGTTGGCACCCTGGCACGTTGGCACGCCAAGGCACGTTGGCACTC
ATAGCACGTAGGCACGCTGACACGCATAGCACGCTGGCACGCGTGGCACG
CGATTTAGCAGACTCTTATTCTTAGTATTTATTATTCCTTTGTAATGAGT
TTCATTTATTTATATTTTTGCTTTACTAGAATGAGATGCGATGAATGGGC
AGTTTTAATAGTACTGGCATTCTGTTGTCTTGTCTCCTTGTCGTTATTTG
GAGTTGATATCTATATATTTTACCGGTACCCAGCAGAAAATGGAATGGTA
CATGGCACATTGGTGGTATTTCTCTGCTTAAACCTTTGTTTAAGATATGT
TTTTCAAACAGTATACACAGACAAGAAAAAATACAACCACCTTATACTCA
ATATAGGTAAAGTATAACCTGCATTGAAACTTTAATAAAAGGAGAATTTT
TTTCTTTCTTCTAAAAACTAGTAGATTCTGATTTGTTTGTTCTTTGTTCT
TAGGTTCTTACTAAAATTATCCGCTTGTTCTTATAAGGTGGAGAGCGAGT
CAGTAAGTGAGAAGCGAGAAGAAGTTTGAGCAGGAATTTAATTTGACGGA
TGGCCGCAAAAGTTCTTTCAGAAGGGATTTAATTTGGATCTTATTATCGG
ACTTTTTGATTTTTCTAAAACCGGGATGCCTTGTGGGATTGTTTCGGGTG
TATTACAATAGAATTCCCTCGAGGAATTGCTAAGGGATTTCTATTGTAAT
TCCCCGAAACAATCCCATAATGCATCTTTTGAAAGAACTTTTGGGTCTAT
TTAATCAGGGATATGTTATAGCGGAGCTGGATAACGCACATTTGAAAAAG
CCTTGTTCTATCTCTGTCCCTGACATTAAAATTTGACATGAAATTAAACT
TTTTTAATTACAAATTCGTGAAATTTGGATTTCTTTTTAGCCAATGATTC
TGCTGCTGCATTTATTGTTCACGATTAAAAACTATTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATGACAATTTAAAAA
AATGAAAAACATTGTTTTCATTAGTAAAGTTATAAGGAATTTCTTCTGTA
AGATTATAAATAGCTCTTTTTTATTTGAAATACCGCGCTACACCGCGGGG
TGCCTCCCTGTCTACTCTCGGGTACCTAATAGCGGGGGGGTTTGGAATAA
GCAGGGGGGTTGGAAAAAATCTCATAATTTAATAAGCGGGGGCTTGGAAT
AAAAATGTCCTGGGAGGAAAATGTTCGAAAATGAGGCTGATACAGCAGAA
TTAGGGCAAAAGAGGGAACTTTCAAAAAAAAATTTCCCAAAAATCAATAA
GCGGGGGGGGGTCGCAATAAGTCCTGGGTGGAAAATTTTCGAAAAATTAA
TAAGCGGGCCTCCCCAGCTATTAGGTACCCGAGAGTAACTGATATTTTCA
GATAGAAAGTCGGTATGTCTGATTATGGAAAAAATTTCAAGTCAATTGAA
ACAATATTTGTCAAAGTATTTACATCCGAAATTTTTAAAGAGAAATCATG
AAAGCTTCTCAAATTCATAACACTTGCTGATAAAATTAGATTTAATTTAC
AAAGAAGCTTTTGGGGTATCTTTTGCAAATATTATTTTGATGAAAAGCGG
GAACATCATAGCAAAATATATGCAAACGTACTGCATGGATACTTTGTCTA
CTTCATTTTTCTTATAAAAACACAACACTCAAGGGGACAGAGATGGATTT
CTATTATGAACAGTTTACAATAGAAAAGACAAAGAAGCAATCCACTAAGG
AATTCTCGTCCTTCATCCAGCTCCACTATAACATATCCCTGATTTAATAT
GGTGGATGAAGGACATTTTTGTGACCAAGTCCGCCAAGTCCGCAAAATTT
TCTTACTGCGGTACTTTCAGAACGAACAGATCGTGAGTACATGAAGCTTA
ATAATTTGACCATTTCTTATTTTTCTTTCTTCTAGAACTGTCGGCAAGTC
TCTTGGCAGCAATCTTGATAGAAGAATCACTTATTCGCATTATTTTCATA
TCATGGAGTGTGTTCACAACAATTTATATATTTGTTCTCATAATAACGAA
AGTATTCCACCAATATTGGTATGGCAAAGAGAACTTCTTTATTCAAAAGC
AAACTCTACCGGAATTTATTGAAGAACAAGTAAATACTGATCCACAAATC
ACAATTCGTTGTAAAGCTTTTCGACCAAAATCGATTTGGAAATTTTGGCA
ATCTAAAGAAGTAATTGGTAATGATGCTAAAATATTTGTCGAATACGAAA
ATTGTATTGATTTGACTGATCAAAGCTCTATTGAAGGTTACAAAAAAACA
TGGCAAGTAATTATAGACTTTAAAATTGATTTTGAAGAGCAAATAGAGAC
ACTATATTTTCGAACGAGCCAACAATTCATTGATGATTTTCGAAAGAGCT
TACCAGAGGAGTACAAAGAAGACTCTGAGATTGCAGTGAAATACGATATC
ACATTCAGCAGACAAAATAAGACTGTAATTAGTTTAAGAAATGAATCTTT
GGAAATGTTTTTCTGGATTTTAGGTATTCCAGGACTTATGTTGGAAGGTT
TGTTATTGTTTGATGAGAAATATGGAAGTTGTTATTTTACCAAACGAATC
ACTATTCAAAAGAAAATATCTTAATCGGGTTAATCTAAAATTTCATTTTA
AAAATGTTTCTTAAATATAAGCTGTTTCAATCGATATCGTTAGAAAAATA
AGAGAACGAATGACTCTCTCTAATTTGAACTTCAAGAGGCCAAGAATTTT
CTTCAGATAATAGAAAGATTCGAATTATACGAAGTATTTTATACTTATTT
CTAGCTGAGAGGACCAATACTTAGTTTGAGTTATAAAAAAATTCGAATAA
TTGTTGAGGTTCAAATTAGAGAGGGCTGACTGTATATGAAAATTAGATTT
TGTCAATATATAAAGACCAGTAAGCCCCTTTTTTAATCCAAAAGAGTTTT
ATCAAGAATATTTAAAGCGTCGTAAAAATAGGGTATTTTATGGAGGGAAT
TTTGGTTGACTCGAAAACTCAGAGGAAATTTCCCAATTTCAGTCCCATCC
GAGGTATTGTCTTACACAAATTTCAAAAAGTCAACGATTGGATTTCCCTG
GGGGAGACTGGAAATTGACATTTACCATTAATATAAAAAAAATACAAAAA
AATTAGTTAAATAAAACTTTCTAATGAGTTTTTATATTGTACCAGGTTTT
GTTTTCCATTTTTTTTAAGTCCTATGGGGCCGTCCACATAGTACGTACGC
ACTGAAATGTCGAAAATCGAGTACCCTCCCCCCCTGTACGCAAGCGTACG
CAAATGGCTATACCCCCTCTTGTAATTATGTACTTTTTCATTCAGCCCCC
CCCCCCTAGGTTGAAGAAAATTTCGAATTCAAATCGTTTGGTTCGGACCT
TTATTTCATACATGAAACTCAATGCTTATCAAGAAACCTTTATCTTTCCT
TGATGCGTAACAAGCGGAAAAGTCGACAAAAAAACAGCGAAATAGGGCTT
AAAAAAAAATTCTCTGCGTACGTACATTTTCCTTTGAAAAATGTTAAATG
AGGTTTATATGACTTCAATATCTTTGTTTGAAATGACTTTTCTGATTGTC
ACTTTTTTTAAAAAGGGTTCAATAGCCATTCTAACGATTAACCAATCGAT
GATCTTCCGACATATGCTAAGGATACTGACAGGCAAAAACAAAACAACGA
ACCAAGTATACTCTTCTAGAAACTTTTCAAGACCGGTAGAACTTAGATTG
ATAACTATCTCTCTGTCAATGTTGATTCCATCCAGTTTGATTATGCTTAT
TGTTTTGATCTCACCATTCAGGCACATTTCAGGTAACTCGTCCAAAAGAT
TTTGAACATGTTGTTGATATGATTTTTCTGTTTCCTTATCATCAAACTGA
ATATCGAATTCAATCTTCTGAAAATTCTGCTCCTTTTCAATATTCTCAAT
CAAAACTTCATCAATCTGACTCAAATCAATCCAATGTTTATATTTGAAAG
TCTTATTTTCTCTCCAAATGACTTTTCTTGTTTTCCAAAATTTCCAGATC
GGTTTTGGTTCTCTCACTTCACAATTTGTTATAACTTCAGGCGCTGCTCG
TATATTTTGTTTGATTTTATCTTCCCAAGCAATCTTTCTTTCATGGCTTC
CTTCAAAAATTAATCTTAAACCGTCATCACGATATAGCCTAATGGCTGCA
ATAACTGTGTGACTAAATGACAACACTGCCCATGCTCCGAAAATAGATTT
CATAATCGACGACTCAACACAAAGGGTTCCAAGCAAAGCAAAACAAAACT
CTAAAACGGAGAAAAAGAAGTTTTATTTACCTATATGAATCTGCTCTATA
TCAACAACCAGTCAGCAACACTATACAGAAATGGTAAGTATTAGCTTAAC
GGGAAATACTTCCCGAACGGGAAGGTGGAAAAAATCCCGAAACATCTTTT
GTTTCCAAATTGGATAAGAAGCAAGTTTCCTGTTTGAGAAAATTGGCTTT
AAACACTCGGGAAATGGTCCTGGAGAAAAGGCAAATAACTGTTCGCCCTG
GTTAAATAAATAAGTAAGAAGAGTAGACTCTTCTTAATACCTTTTTTGTC
TATTTTTTTTTCACTGATTTGGCAGTTACTTCCCCGAAATAAATGCGTAG
TGGAAAATCGAAAATGGCGGTCATAAAATGTGTTTAATCAGGAATTTATT
TCTTTTTTGGGCATGACCATAGTTACTAATTTAAAGTATGGTAGCTCTAG
CCAATTCGATATAATTCTGTCTCGATCAATTCAAATGAACTAAAGGTCTT
TGCAAACTCCAATCCAGTCCTCCCAGTAAAATTAAAAAGTTTTGTAAGTT
GCTCTGGGTACCAGATTGAGTTCCTTGGCATCACACACATAGCTTTTGAT
GACAATGAAAAATAAATATTTTGGGAGCCCAAAAAATGCATTGAATATAA
AGCTGCATCTGGTACATTTACTTTTGTAGAGCGTAATGACAATAAAACTT
TATGTATACTTACGCCATTGCAAGACCTTCAAACGTTTACATTCGAAATC
ATTTTGACAAATAGCTGCAAAAACTCCATCAAATAAATGGAAGACAATAT
ACACTCCAGTAGCAACACTTGCTTCAGCGGGGTGGTTGATATATCCAAAA
AATCCGCCACCCATAATAAGAATACCCAAAACAAAAAAAGCAACATAATA
ATATCCACATAAAGAGTCTCCCATTTTTATTGTCTCTTTTGCGTGCCTGG
TCTACTAAAATACAATTGTAGTAATATGCAGTGTTATATTTCCTACTTTC
TGTAATCTAATCAACGCGTTTCTGTTAATTAGAATTACTGTGTGTAATTG
CATTTTAATGGTAGATAATTTGTTATACGGAATTGCTTAAGTAACATAGG
CACACAAAAGGACAAAAACTGTCTGTAATGTATTAATGTATTATTCATTG
GTTTATGGGGTTTTGTTGTTTGTATTTTGGGCGTTTATTTTGGATTTAAC
AACCCCTCTGAAGGAGGTTTTGCCATTGGAGTGTATATTGTGTTCCATTT
AATTGATGGAGTTTTTGCATCTTTTTGTCGCCACAAAAATGATTTAAAAT
GCGTACGTTTGAAGGTCCTGCAATGGCGTAAGTGTACATAAAGTTTCCCT
TTTTAATCTTTTTATTGTCATTACACGTTTTTTTTTTTTATAAGAACGTC
AAAAATTTTCAAAGCCTTCGGATGTTCTTAGTTTTTTGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTATT
AAGCAACAACAAACTCTCAAAATAAAATCAACTCAAATGAAACATTTTTA
ACACACAAATCCACACACATTTTATTTTCAAGAATTTTTTTTGAGCCGGG
AAAAATTTTAATTGCGATATTGACACTTTTTTTTTGTTAAAGTTAAAGAG
TTAGTGCACAAAGGTTTCTAGACGACTAAAATTTACTTTTTTGCTTTATT
TCTAATATGTCTGAATTAGTCGTCTAGCTTGCTAGACTATACATTATGCA
GCTTTAGATTCACTGCATTTTTCGNTTGGAGTTAGTGCACAAAGGTTTCT
AGACGACTAAAATTTACTTTTTTGCTTTATTTCTAATATGTCTGAATTAG
TCGTCTAGCTTGCTAGACTATACATTATGCAGCTTTAGATTCACTGCATT
TTTCGGGCTCCCAAAATATTTATTTTACATTGTCCTAAGGAAGAGGGCTA
TGTGCACAATGTGCTAAATCTGGTACCTAGAGCCACATAAAAACATTTTA
ATTTTACTGGGAGGACTGCGGATTGAAGTTTGCAAAGACCTTTAATTCAA
TGTACATTTGAATTGATCGAGACAGAATTATATCGAAAGGGCTAGAGCTA
CCATAGTCAGCCACATAGCCATTCTCCATAGTAAAAGTTAGTTCCCAGAC
GTCATGCTCGAAAATGAAATAAATTCCTGATTTAACACATTTTATGGCTT
TTAGAGGCTACTCTCCTTATTTATATATTTAACAAGGGCGATCAGTTATT
TATCTTTTTCTCTAGGACCATTTCCGGAGCGCTTAAAGCCAATTTTCTCA
AACAGGAAACTTGCTTCTTATCCAATTTGGAAACGAAAGATGTTTTCGAC
CTTCCTGTTCGGGAAGTATTTCCCGATAAGCTAATACTTACCATTTCTCT
ATAGCGTTACTGACTGGTTGTGGATATAGAGTAGATTCATATAGGTATAT
CAAACTTCTTTATCTCTCGGTTTTAGAGTTTTGCTCATCTTTTGATTGGA
ACTATTTTTGTCAAGTCGTCGATCATGAAATCTATTTTCGGAACATGGGC
TGTGTTGTCATTCGGCCACGCAACCATTATGCTACATTGCGATGACGGTT
TAAGATTTACTTTTGGATATTTTCCCCATCCCAAATGAATAATCTTTCTT
AAAACAATGGAATTCAAATCCCCAGCGATTAGAAACAAGGTTATATCAAT
CCCCATCGGCCTTCAGTCCTTTATCTTTATCCCCAATCCTACCGGGTCTG
TGAGAACGGGTTGTTTTCAGAGGGAATCAATTTTGGCGGATGGCTTGAAA
AATTAAATTTGGCTGGATAAAGGATATTTTTGTCCAAAAACTTCAATCAA
ATAAGAAATTCCCTGAAATAGCACACATTTGGGGGAATAAATGCAGTAAT
TTTAATTTGGCGAATGGCCGGAAAAATAAATTTGGTGGGAACTTAATTTT
GACCAAATCCGCCAAATCCGCCAAATCCACCAAATCCGCCAAATTTTGTT
CCCTTAAGGCACTTCCAGAACAAACAGACCAAGATAACGTGGAGCTTAAT
AATTTGACTATTTCTTTATTTTTCTTTCTTCTAGAACTGTCTGCAAGTCT
CTTGGCAGCAATCTTGATAGAAGAATCACTTATTCGCATTATTTTCATAT
CATGGAGTGTGCTCACAACAATTTATATATTCGTTCTTATAATAACGAAA
GTATTCCAACAATATTGGTATGGCAAAGAGAATTTCTTTATTCAAAAACA
AACTCTACCAGAATTTATTGAAGAACAAATAAATACTGATCCACAAATCA
CAATTCGTTGTAAAGCTTTTCGACCAAAATCGATTTGGAAATTTTGGCAA
TCTAAAGAAGTAATTGGTAATGATGCTAAAATATTTGTCGACTACGAAAA
TTGTATTGATTTGATTGATCAAATTTCCATTGAAGGTTACACGAAGACAT
GGCGAGTAATTATAGACTTTAAAATTGATTTTGAAGAGCAAATAGAGACA
CTCTATTTTCGAACGAGCAAACAATTTATTGATGATTTCCAAAAGAGCTT
GCCAGAGGAGCCAGAGGAGTACCAAGAAGACTCTGAGATTGCAGTCAAAT
ACAACATCACATTCAGCAGACAAAATAAGACTGTAATTTGTTTAACAAAA
GGAATCTTTTGAAATGTTTTTCTGGATTTTAGGTATTCCAGGACTTATGT
TGGAAGGTTTGCTATTGTTT

Coding sequence (CDS) from alignment at scaffold_251:912734..926303-

>TCONS_00055254 ID=TCONS_00055254|Name=TCONS_00055254|organism=Clytia hemisphaerica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_251:912734..926303- (Clytia hemisphaerica)
GTATTCCAGGACTTATGTTGGAAGGTTTGCTATTGTTTAACTGTCGGCAA
GTCTCTTGGCAGCAATCTTGATAGAAGAATCACTTATTCGCATTATTTTC
ATATCATGGAGTGTGTTCACAACAATTTATATATTTGTTCTCATAATAAC
GAAAGTATTCCACCAATATTGGTATGGCAAAGAGAACTTCTTTATTCAAA
AGCAAACTCTACCGGAATTTATTGAAGAACAAGTAAATACTGATCCACAA
ATCACAATTCGTTGTAAAGCTTTTCGACCAAAATCGATTTGGAAATTTTG
GCAATCTAAAGAAGTAATTGGTAATGATGCTAAAATATTTGTCGAATACG
AAAATTGTATTGATTTGACTGATCAAAGCTCTATTGAAGGTTACAAAAAA
ACATGGCAAGTAATTATAGACTTTAAAATTGATTTTGAAGAGCAAATAGA
GACACTATATTTTCGAACGAGCCAACAATTCATTGATGATTTTCGAAAGA
GCTTACCAGAGGAGTACAAAGAAGACTCTGAGATTGCAGTGAAATACGAT
ATCACATTCAGCAGACAAAATAAGACTGTAATTAGTTTAAGAAATGAATC
TTTGGAAATGTTTTTCTGGATTTTAGAATGAGATGCGATGAATGGGCAGT
TTTAATAGTACTGGCATTCTGTTGTCTTGTCTCCTTGTCGTTATTTGGAG
TTGATATCTATATATTTTACCGGTACCCAGCAGAAAATGGAATGGTACAT
GGCACATTGGTGGTATTTCTCTGCTTAAACCTTTGTTTAAGATATGTTTT
TCAAACAGTATACACAGACAAGAAAAAATACAACCACCTTATACTCAATA
TAGATGGCGTTGTCTCTGTATTCCAGGACTTATGTTGGAAGGTTTGCTAT
TGTTTAACTGTCGGCAAGTCTCTTGGCAGCAATCTTGATAGAAGAATCAC
TTATTCGCATTATTTTCATATCATGGAGTGTGTTCACAACAATTTATATA
TTTGTTCTCATAATAACGAAAGTATTCCACCAATATTGGTATGGCAAAGA
GAACTTCTTTATTCAAAAGCAAACTCTACCGGAATTTATTGAAGAACAAG
TAAATACTGATCCACAAATCACAATTCGTTGTAAAGCTTTTCGACCAAAA
TCGATTTGGAAATTTTGGCAATCTAAAGAAGTAATTGGTAATGATGCTAA
AATATTTGTCGAATACGAAAATTGTATTGATTTGACTGATCAAAGCTCTA
TTGAAGGTTACAAAAAAACATGGCAAGTAATTATAGACTTTAAAATTGAT
TTTGAAGAGCAAATAGAGACACTATATTTTCGAACGAGCCAACAATTCAT
TGATGATTTTCGAAAGAGCTTACCAGAGGAGTACAAAGAAGACTCTGAGA
TTGCAGTGAAATACGATATCACATTCAGCAGACAAAATAAGACTGTAATT
AGTTTAAGAAATGAATCTTTGGAAATGTTTTTCTGGATTTTAGAATGAGA
TGCGATGAATGGGCAGTTTTAATAGTACTGGCATTCTGTTGTCTTGTCTC
CTTGTCGTTATTTGGAGTTGATATCTATATATTTTACCGGTACCCAGCAG
AAAATGGAATGGTACATGGCACATTGGTGGTATTTCTCTGCTTAAACCTT
TGTTTAAGATATGTTTTTCAAACAGTATACACAGACAAGAAAAAATACAA
CCACCTTATACTCAATATAGATGGCGTTGTCTCTGTATTCCAGGACTTAT
GTTGGAAGGTTTGCTATTGTTTAACTGTCGGCAAGTCTCTTGGCAGCAAT
CTTGATAGAAGAATCACTTATTCGCATTATTTTCATATCATGGAGTGTGT
TCACAACAATTTATATATTTGTTCTCATAATAACGAAAGTATTCCACCAA
TATTGGTATGGCAAAGAGAACTTCTTTATTCAAAAGCAAACTCTACCGGA
ATTTATTGAAGAACAAGTAAATACTGATCCACAAATCACAATTCGTTGTA
AAGCTTTTCGACCAAAATCGATTTGGAAATTTTGGCAATCTAAAGAAGTA
ATTGGTAATGATGCTAAAATATTTGTCGAATACGAAAATTGTATTGATTT
GACTGATCAAAGCTCTATTGAAGGTTACAAAAAAACATGGCAAGTAATTA
TAGACTTTAAAATTGATTTTGAAGAGCAAATAGAGACACTATATTTTCGA
ACGAGCCAACAATTCATTGATGATTTTCGAAAGAGCTTACCAGAGGAGTA
CAAAGAAGACTCTGAGATTGCAGTGAAATACGATATCACATTCAGCAGAC
AAAATAAGACTGTAATTAGTTTAAGAAATGAATCTTTGGAAATGTTTTTC
TGGATTTTAGAATGAGATGCGATGAATGGGCAGTTTTAATAGTACTGGCA
TTCTGTTGTCTTGTCTCCTTGTCGTTATTTGGAGTTGATATCTATATATT
TTACCGGTACCCAGCAGAAAATGGAATGGTACATGGCACATTGGTGGTAT
TTCTCTGCTTAAACCTTTGTTTAAGATATGTTTTTCAAACAGTATACACA
GACAAGAAAAAATACAACCACCTTATACTCAATATAGATGGCGTTGTCTC
TGTATTCCAGGACTTATGTTGGAAGGTTTGCTATTGTTTAACTGTCGGCA
AGTCTCTTGGCAGCAATCTTGATAGAAGAATCACTTATTCGCATTATTTT
CATATCATGGAGTGTGTTCACAACAATTTATATATTTGTTCTCATAATAA
CGAAAGTATTCCACCAATATTGGTATGGCAAAGAGAACTTCTTTATTCAA
AAGCAAACTCTACCGGAATTTATTGAAGAACAAGTAAATACTGATCCACA
AATCACAATTCGTTGTAAAGCTTTTCGACCAAAATCGATTTGGAAATTTT
GGCAATCTAAAGAAGTAATTGGTAATGATGCTAAAATATTTGTCGAATAC
GAAAATTGTATTGATTTGACTGATCAAAGCTCTATTGAAGGTTACAAAAA
AACATGGCAAGTAATTATAGACTTTAAAATTGATTTTGAAGAGCAAATAG
AGACACTATATTTTCGAACGAGCCAACAATTCATTGATGATTTTCGAAAG
AGCTTACCAGAGGAGTACAAAGAAGACTCTGAGATTGCAGTGAAATACGA
TATCACATTCAGCAGACAAAATAAGACTGTAATTAGTTTAAGAAATGAAT
CTTTGGAAATGTTTTTCTGGATTTTAGAATGAGATGCGATGAATGGGCAG
TTTTAATAGTACTGGCATTCTGTTGTCTTGTCTCCTTGTCGTTATTTGGA
GTTGATATCTATATATTTTACCGGTACCCAGCAGAAAATGGAATGGTACA
TGGCACATTGGTGGTATTTCTCTGCTTAAACCTTTGTTTAAGATATGTTT
TTCAAACAGTATACACAGACAAGAAAAAATACAACCACCTTATACTCAAT
ATAGATGGCGTTGTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034798XLOC_034798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055254-exon-scaffold_251-1575043694:925680..926303TCONS_00055254-exon-scaffold_251-1575043694:925680..926303Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1575043694:922598..922824TCONS_00055254-exon-scaffold_251-1575043694:922598..922824Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1575043694:920331..920918TCONS_00055254-exon-scaffold_251-1575043694:920331..920918Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1575043694:912734..912771TCONS_00055254-exon-scaffold_251-1575043694:912734..912771Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1510915933:925680..926303TCONS_00055254-exon-scaffold_251-1510915933:925680..926303Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1510915933:922598..922824TCONS_00055254-exon-scaffold_251-1510915933:922598..922824Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1510915933:920331..920918TCONS_00055254-exon-scaffold_251-1510915933:920331..920918Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1510915933:912734..912771TCONS_00055254-exon-scaffold_251-1510915933:912734..912771Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1491911889:925680..926303TCONS_00055254-exon-scaffold_251-1491911889:925680..926303Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1491911889:922598..922824TCONS_00055254-exon-scaffold_251-1491911889:922598..922824Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1491911889:920331..920918TCONS_00055254-exon-scaffold_251-1491911889:920331..920918Clytia hemisphaericaexon
TCONS_00055254-exon-scaffold_251-1491911889:912734..912771TCONS_00055254-exon-scaffold_251-1491911889:912734..912771Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055254-proteinTCONS_00055254-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:912734..926303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0534642	0.0447422	0	1.52223e-08	0	0.946669	0.870413	0.620578	1.20095	0.418565	1.28862	2.12236	2.29959	2.49317	2.92424	1.1507	1.47064	0.782492	0	1.06574	1.42334	1.1674	1.5584	0.419244	0.682061	5.29994	3.83818	1.0539	1.39051
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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