|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055258 ID=TCONS_00055258|Name=TCONS_00055258|organism=Clytia hemisphaerica|type=transcript|length=1599bp
CATGTATTTAATTGCAGACATGTTCTCCTTGTTTCGAGCCAAATCTTCGG
CAGTAATGGtggttgacatcatttctatttcACTCAAAGCGTCTTCAGGA
GATTTGTTTTCATCCATCAAACACTTTTTAGCCGTGTTAATTTGTGACTT
GTTAAAAACATCATTTGGATCGATCGACAATTTACTTTTCGTAAATGACG
AAGACGAGGTCGTCGGCGGTGGTAAATATGATAATGGTGTTGTTGCTGGt
tgaggtggtggaggtggtaaTTTTAACGATGCTGAAGATGACACTGTCGT
CAAAGGTAATGGTGGTTTAAATTCGAGAAAATCGGTCGCTTTTGACTGGT
GTGTCATCGTTGGTGCAAACAGTGTGCTACAAAAGAAGAAGCATCCACAC
GTTCATCTCCCAACATGTAAGTAGATGCTATTGTTGTGGACGGAATACAT
TCCAAAGAAATTAGTGCTGATTCAACCAAGTGAGGAGTTAGAGTTGGCAT
TTTctgctgttgttgttgctgttgttgttgaaattgttgttgttgttgtt
gttgtgtgtgtgtgtgtgtgtgtattGGCTTCGTCAGTTGATTCTCGCTC
CGAGGAGAGTCCTCCTCGCCAGCGCGATTGACTGTTCTGGTCGTTTCGTC
AGCAAGCTGAGTCCATCGTCGACTTCCTCGCCAAAGATTTCGAAACGGGC
CTCACGTGTGTCCGGGCAGTCCAAAAACCAGTGTTGGAGATCGTGCTGCT
GGTGGTCACAGTGAGGACATTTTGGGTCTACTTCTTCGTGAAGTTGGTGA
TCGTATGCAGCGAAGGCAAGGTGTTTACCACATCTAATTCGTGCCAGGTC
TACCTGGTCGTGCCTCGTCTTCACTGCTTTCtcttttgacattgaatatt
ttgaatagACTTCTTTCAGCCAAGGGCGTTCCGGGTCCCCGTCTTTGATA
TTGGATTTTATTATTGTGCGGGCACACTTCATGCTGGTTGTCTGGTGGAC
GCCTTCTAGCTTTGTCGCTTCTTTTGCAGCTTTGTCAGCTGCCTCGTTCC
CCGGTATGTTACTGTGTCCGGGCAGCCATTGAATTGTGATTTTTGCCTTC
GTTTGGCTCAAACGTTGTATGATGGCGTCTATCTCTCTGTTATTGTGTTG
GAGAGCTTGGCATAGGGATTGACTATCAGTCGCAATCACGATCGAATCAT
CGTCTTCTGTATTTACTGCAATCCACTCTGCTGCTCGTTCCATGGCACGG
ACTTCTTCTTCATATGAACTCGTGAACTTCGCCCCTTTGGTCTTTATGAT
GGTGACAGGTGCTATTTCAGCAGGGTCATCTGTTGTCACCACTAATCCTG
CTCCTCCATCGGTTGTTCCCGCCATAGCAGACCCGTCTGTGTAGATGGTA
TATGTTGGGTTGAGGGAACGTAATTGCGTCAAGGTTGCTTCAAGGATTTG
ATTCTGATTTGCATGTTTATTCTCGATGCCAGGTAGTGAGCTGAATATTT
CGATGTTTGGATTTGATAACCAAGGTGGGTGGGTGAAGTAGTCTAGAGGT
TTTCTGTTCTCGATGTCGTCCAGGTCTGGGAGTCTGGTTAGCAGATCCC Run BLAST on NCBI protein sequence of TCONS_00055258-protein >TCONS_00055258-protein ID=TCONS_00055258-protein|Name=TCONS_00055258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
DLLTRLPDLDDIENRKPLDYFTHPPWLSNPNIEIFSSLPGIENKHANQNQ
ILEATLTQLRSLNPTYTIYTDGSAMAGTTDGGAGLVVTTDDPAEIAPVTI
IKTKGAKFTSSYEEEVRAMERAAEWIAVNTEDDDSIVIATDSQSLCQALQ
HNNREIDAIIQRLSQTKAKITIQWLPGHSNIPGNEAADKAAKEATKLEGV
HQTTSMKCARTIIKSNIKDGDPERPWLKEVYSKYSMSKEKAVKTRHDQVD
LARIRCGKHLAFAAYDHQLHEEVDPKCPHCDHQQHDLQHWFLDCPDTREA
RFEIFGEEVDDGLSLLTKRPEQSIALARRTLLGARIN Run BLAST on NCBI transcript from alignment at scaffold_251:37453..39051 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055258 ID=TCONS_00055258|Name=TCONS_00055258|organism=Clytia hemisphaerica|type=transcript|length=1599bp|location=Sequence derived from alignment at scaffold_251:37453..39051 (Clytia hemisphaerica)
GGGATCTGCTAACCAGACTCCCAGACCTGGACGACATCGAGAACAGAAAA
CCTCTAGACTACTTCACCCACCCACCTTGGTTATCAAATCCAAACATCGA
AATATTCAGCTCACTACCTGGCATCGAGAATAAACATGCAAATCAGAATC
AAATCCTTGAAGCAACCTTGACGCAATTACGTTCCCTCAACCCAACATAT
ACCATCTACACAGACGGGTCTGCTATGGCGGGAACAACCGATGGAGGAGC
AGGATTAGTGGTGACAACAGATGACCCTGCTGAAATAGCACCTGTCACCA
TCATAAAGACCAAAGGGGCGAAGTTCACGAGTTCATATGAAGAAGAAGTC
CGTGCCATGGAACGAGCAGCAGAGTGGATTGCAGTAAATACAGAAGACGA
TGATTCGATCGTGATTGCGACTGATAGTCAATCCCTATGCCAAGCTCTCC
AACACAATAACAGAGAGATAGACGCCATCATACAACGTTTGAGCCAAACG
AAGGCAAAAATCACAATTCAATGGCTGCCCGGACACAGTAACATACCGGG
GAACGAGGCAGCTGACAAAGCTGCAAAAGAAGCGACAAAGCTAGAAGGCG
TCCACCAGACAACCAGCATGAAGTGTGCCCGCACAATAATAAAATCCAAT
ATCAAAGACGGGGACCCGGAACGCCCTTGGCTGAAAGAAGTctattcaaa
atattcaatgtcaaaagaGAAAGCAGTGAAGACGAGGCACGACCAGGTAG
ACCTGGCACGAATTAGATGTGGTAAACACCTTGCCTTCGCTGCATACGAT
CACCAACTTCACGAAGAAGTAGACCCAAAATGTCCTCACTGTGACCACCA
GCAGCACGATCTCCAACACTGGTTTTTGGACTGCCCGGACACACGTGAGG
CCCGTTTCGAAATCTTTGGCGAGGAAGTCGACGATGGACTCAGCTTGCTG
ACGAAACGACCAGAACAGTCAATCGCGCTGGCGAGGAGGACTCTCCTCGG
AGCGAGAATCAACTGACGAAGCCaatacacacacacacacacacacaaca
acaacaacaacaacaatttcaacaacaacagcaacaacaacagcagAAAA
TGCCAACTCTAACTCCTCACTTGGTTGAATCAGCACTAATTTCTTTGGAA
TGTATTCCGTCCACAACAATAGCATCTACTTACATGTTGGGAGATGAACG
TGTGGATGCTTCTTCTTTTGTAGCACACTGTTTGCACCAACGATGACACA
CCAGTCAAAAGCGACCGATTTTCTCGAATTTAAACCACCATTACCTTTGA
CGACAGTGTCATCTTCAGCATCGTTAAAAttaccacctccaccacctcaa
CCAGCAACAACACCATTATCATATTTACCACCGCCGACGACCTCGTCTTC
GTCATTTACGAAAAGTAAATTGTCGATCGATCCAAATGATGTTTTTAACA
AGTCACAAATTAACACGGCTAAAAAGTGTTTGATGGATGAAAACAAATCT
CCTGAAGACGCTTTGAGTgaaatagaaatgatgtcaaccaCCATTACTGC
CGAAGATTTGGCTCGAAACAAGGAGAACATGTCTGCAATTAAATACATG Coding sequence (CDS) from alignment at scaffold_251:37453..39051 >TCONS_00055258 ID=TCONS_00055258|Name=TCONS_00055258|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_251:37453..39051 (Clytia hemisphaerica)
GATCTGCTAACCAGACTCCCAGACCTGGACGACATCGAGAACAGAAAACC
TCTAGACTACTTCACCCACCCACCTTGGTTATCAAATCCAAACATCGAAA
TATTCAGCTCACTACCTGGCATCGAGAATAAACATGCAAATCAGAATCAA
ATCCTTGAAGCAACCTTGACGCAATTACGTTCCCTCAACCCAACATATAC
CATCTACACAGACGGGTCTGCTATGGCGGGAACAACCGATGGAGGAGCAG
GATTAGTGGTGACAACAGATGACCCTGCTGAAATAGCACCTGTCACCATC
ATAAAGACCAAAGGGGCGAAGTTCACGAGTTCATATGAAGAAGAAGTCCG
TGCCATGGAACGAGCAGCAGAGTGGATTGCAGTAAATACAGAAGACGATG
ATTCGATCGTGATTGCGACTGATAGTCAATCCCTATGCCAAGCTCTCCAA
CACAATAACAGAGAGATAGACGCCATCATACAACGTTTGAGCCAAACGAA
GGCAAAAATCACAATTCAATGGCTGCCCGGACACAGTAACATACCGGGGA
ACGAGGCAGCTGACAAAGCTGCAAAAGAAGCGACAAAGCTAGAAGGCGTC
CACCAGACAACCAGCATGAAGTGTGCCCGCACAATAATAAAATCCAATAT
CAAAGACGGGGACCCGGAACGCCCTTGGCTGAAAGAAGTctattcaaaat
attcaatgtcaaaagaGAAAGCAGTGAAGACGAGGCACGACCAGGTAGAC
CTGGCACGAATTAGATGTGGTAAACACCTTGCCTTCGCTGCATACGATCA
CCAACTTCACGAAGAAGTAGACCCAAAATGTCCTCACTGTGACCACCAGC
AGCACGATCTCCAACACTGGTTTTTGGACTGCCCGGACACACGTGAGGCC
CGTTTCGAAATCTTTGGCGAGGAAGTCGACGATGGACTCAGCTTGCTGAC
GAAACGACCAGAACAGTCAATCGCGCTGGCGAGGAGGACTCTCCTCGGAG
CGAGAATCAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055258-exon-scaffold_251-1491911889:37453..39051 | TCONS_00055258-exon-scaffold_251-1491911889:37453..39051 | Clytia hemisphaerica | exon |
| TCONS_00055258-exon-scaffold_251-1510915933:37453..39051 | TCONS_00055258-exon-scaffold_251-1510915933:37453..39051 | Clytia hemisphaerica | exon |
| TCONS_00055258-exon-scaffold_251-1575043694:37453..39051 | TCONS_00055258-exon-scaffold_251-1575043694:37453..39051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:37453..39051 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0004523 | RNA-DNA hybrid ribonuclease activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
Blast
The following BLAST results are available for this feature:
|
