TCONS_00055262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055262
Unique NameTCONS_00055262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055262 ID=TCONS_00055262|Name=TCONS_00055262|organism=Clytia hemisphaerica|type=transcript|length=1886bp
TTTTCTTCTTGTAAATGCAAAACATCATCAGAATTCAATGTCTCGTTATT
TTTTCCGTTCGGTTTCGGTCTATCTTCCGATTCTTCCATTAGCGTTCCAT
CATCGTCTTCAATCAAGTCTGGAGTGGTCGGTTGTATATCCCGCAATCTC
TGAGATATCCCCTTACCTGTGATAACAACTGCGATGTATATCCCGACTGA
TGTGAAACAAAGGATACAACCAACAGACAGGAAACTAATCGGTCCaataa
cgtcaaaaagtttCCCGATTAATAATGGAATGGCCATTTCCCCGATTCCG
gaacaaacaacaaaaaaacatgtTATTGTACCTGTTAATCGGAAATAACT
TTCAGCCATAGAAACACTTGTTGGGAATATGTTACTCAAGCACAAACCAA
AAAACGCAGTTCCAATCCATAGGGATATAACATGGTGGCGAAATAAGAAC
ATGAGTATAATGGAAATTAAACACCCAGCTACATCAGCTAATAACATAAC
ACGTGGCGACACATATATAgaaacaaagatggcgaatAATCGTCCAAGAG
CGAGAGTACCCCAAAATAAACTGTTCAAGAAGGCAGCATTGTCTGTATCA
ATCCCTATACCACTTTTGATAGCATATGTGTAAATATAACTGCCAAAAGA
TCCTTGAAGGCCATCTGAGATGAAGACCATGAGAGCAATCCAGAAACTTA
TGAACAAAACTTGTGTTTTGATGTTCGGGTCGATTTCACTACGTTCGCTT
TTGGAAGCTGTATCATCCATACTCGATTCTGTCCGGCTCATACCCAACGA
TAAGTTCAATTCTTGTTTTCGTTTCTTTTCTGCGAAATATAAATAAATCA
GCCCTATAGTGACTATGAGGTGAAGTAACGCGATCACGAAATAAGCCCAA
TGTATACGAGTGGTCGTAATTTTAGTGATTTGGTTCAGTGTTGTGGTACT
TGTATTAGTTGCCAAGCTTGTTCCAATGTTATTGACCCATAATGAAACAC
CGTTTGGCGGTGCAATAACATGACGTTTTGCGAATGCAAAGTCGTCACCA
AGTCCATCACTTTGATCCATATTACATTCACTGTTCAAGAAGTTACCAGC
AATGATAGGACTAAGAAACGCTCCTACAccgtaaaaaaagaaaagtgttt
GTAGATACGGTGGTACGTCTTGCCCGTGCATTATAATCATACGTAAATTG
GTTGCCGTGTCTTGGATCCCAGCGAATAAGCCGTGTATGGAAGTTACGAA
AATGAGTGAACTTAAAGTCCTCATAAAGGGTAGAATCGATAATGCAGCAC
CATGTATAATCATGACTACGCTTAAAAAGATATTGTAGTTAATACTAAAC
CGATCTGTAATAACACCACTGAAAATAGCTCCTAATAGAGCACTAAAAGT
TTGTGCGAAAAAGACCCAACTCATGGCCCCAACATCTTGCCCAGTCAAAC
ATCCAAGTTCAAGGACAGTTGGACCAATGATAGCCATGGACGATCCAAAA
CATAAAAAGCCGCAACATAATACAAAGCTAGACTGGATTTTCGGTGTACA
TAATTGTTGTTTAGCCTGTAAACTTTCATCTGTCGTATCGTTTAGTTGGA
TATTAATATCACCTCCGTTCCTCGGTGTATGACGTTGTGGGGGTGGTGTA
GTATCTAGTGGTAAGGTGCGTTTAGGTATCTTGGGCGTACTTGATGCTCG
AGGGCGTCCATATTCAATGGGTGAATCACGCCTTTTGTGTTCATTGTTGG
CACCAGTCATTTTCACAGCTACAACGTAAAATTCATGTCATGCTTCTTTT
TGTATCTCTGGCTTTATCTTCTTTGCACTTCACAATATATCTATGTCAGT
TTTGACCTTGTCCAAACCGATAAATTTATCACAAAT
Run BLAST on NCBI

protein sequence of TCONS_00055262-protein

>TCONS_00055262-protein ID=TCONS_00055262-protein|Name=TCONS_00055262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MTGANNEHKRRDSPIEYGRPRASSTPKIPKRTLPLDTTPPPQRHTPRNGG
DINIQLNDTTDESLQAKQQLCTPKIQSSFVLCCGFLCFGSSMAIIGPTVL
ELGCLTGQDVGAMSWVFFAQTFSALLGAIFSGVITDRFSINYNIFLSVVM
IIHGAALSILPFMRTLSSLIFVTSIHGLFAGIQDTATNLRMIIMHGQDVP
PYLQTLFFFYGVGAFLSPIIAGNFLNSECNMDQSDGLGDDFAFAKRHVIA
PPNGVSLWVNNIGTSLATNTSTTTLNQITKITTTRIHWAYFVIALLHLIV
TIGLIYLYFAEKKRKQELNLSLGMSRTESSMDDTASKSERSEIDPNIKTQ
VLFISFWIALMVFISDGLQGSFGSYIYTYAIKSGIGIDTDNAAFLNSLFW
GTLALGRLFAIFVSIYVSPRVMLLADVAGCLISIILMFLFRHHVISLWIG
TAFFGLCLSNIFPTSVSMAESYFRLTGTITCFFVVCSGIGEMAIPLLIGK
LFDVIGPISFLSVGCILCFTSVGIYIAVVITGKGISQRLRDIQPTTPDLI
EDDDGTLMEESEDRPKPNGKNNETLNSDDVLHLQEE
Run BLAST on NCBI

transcript from alignment at scaffold_251:238545..240430

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055262 ID=TCONS_00055262|Name=TCONS_00055262|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at scaffold_251:238545..240430 (Clytia hemisphaerica)
ATTTGTGATAAATTTATCGGTTTGGACAAGGTCAAAACTGACATAGATAT
ATTGTGAAGTGCAAAGAAGATAAAGCCAGAGATACAAAAAGAAGCATGAC
ATGAATTTTACGTTGTAGCTGTGAAAATGACTGGTGCCAACAATGAACAC
AAAAGGCGTGATTCACCCATTGAATATGGACGCCCTCGAGCATCAAGTAC
GCCCAAGATACCTAAACGCACCTTACCACTAGATACTACACCACCCCCAC
AACGTCATACACCGAGGAACGGAGGTGATATTAATATCCAACTAAACGAT
ACGACAGATGAAAGTTTACAGGCTAAACAACAATTATGTACACCGAAAAT
CCAGTCTAGCTTTGTATTATGTTGCGGCTTTTTATGTTTTGGATCGTCCA
TGGCTATCATTGGTCCAACTGTCCTTGAACTTGGATGTTTGACTGGGCAA
GATGTTGGGGCCATGAGTTGGGTCTTTTTCGCACAAACTTTTAGTGCTCT
ATTAGGAGCTATTTTCAGTGGTGTTATTACAGATCGGTTTAGTATTAACT
ACAATATCTTTTTAAGCGTAGTCATGATTATACATGGTGCTGCATTATCG
ATTCTACCCTTTATGAGGACTTTAAGTTCACTCATTTTCGTAACTTCCAT
ACACGGCTTATTCGCTGGGATCCAAGACACGGCAACCAATTTACGTATGA
TTATAATGCACGGGCAAGACGTACCACCGTATCTACaaacacttttcttt
ttttacggTGTAGGAGCGTTTCTTAGTCCTATCATTGCTGGTAACTTCTT
GAACAGTGAATGTAATATGGATCAAAGTGATGGACTTGGTGACGACTTTG
CATTCGCAAAACGTCATGTTATTGCACCGCCAAACGGTGTTTCATTATGG
GTCAATAACATTGGAACAAGCTTGGCAACTAATACAAGTACCACAACACT
GAACCAAATCACTAAAATTACGACCACTCGTATACATTGGGCTTATTTCG
TGATCGCGTTACTTCACCTCATAGTCACTATAGGGCTGATTTATTTATAT
TTCGCAGAAAAGAAACGAAAACAAGAATTGAACTTATCGTTGGGTATGAG
CCGGACAGAATCGAGTATGGATGATACAGCTTCCAAAAGCGAACGTAGTG
AAATCGACCCGAACATCAAAACACAAGTTTTGTTCATAAGTTTCTGGATT
GCTCTCATGGTCTTCATCTCAGATGGCCTTCAAGGATCTTTTGGCAGTTA
TATTTACACATATGCTATCAAAAGTGGTATAGGGATTGATACAGACAATG
CTGCCTTCTTGAACAGTTTATTTTGGGGTACTCTCGCTCTTGGACGATTa
ttcgccatctttgtttcTATATATGTGTCGCCACGTGTTATGTTATTAGC
TGATGTAGCTGGGTGTTTAATTTCCATTATACTCATGTTCTTATTTCGCC
ACCATGTTATATCCCTATGGATTGGAACTGCGTTTTTTGGTTTGTGCTTG
AGTAACATATTCCCAACAAGTGTTTCTATGGCTGAAAGTTATTTCCGATT
AACAGGTACAATAacatgtttttttgttgtttgttcCGGAATCGGGGAAA
TGGCCATTCCATTATTAATCGGGaaactttttgacgttattGGACCGATT
AGTTTCCTGTCTGTTGGTTGTATCCTTTGTTTCACATCAGTCGGGATATA
CATCGCAGTTGTTATCACAGGTAAGGGGATATCTCAGAGATTGCGGGATA
TACAACCGACCACTCCAGACTTGATTGAAGACGATGATGGAACGCTAATG
GAAGAATCGGAAGATAGACCGAAACCGAACGGAAAAAATAACGAGACATT
GAATTCTGATGATGTTTTGCATTTACAAGAAGAAAA

Coding sequence (CDS) from alignment at scaffold_251:238545..240430

>TCONS_00055262 ID=TCONS_00055262|Name=TCONS_00055262|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_251:238545..240430 (Clytia hemisphaerica)
ATGACTGGTGCCAACAATGAACACAAAAGGCGTGATTCACCCATTGAATA
TGGACGCCCTCGAGCATCAAGTACGCCCAAGATACCTAAACGCACCTTAC
CACTAGATACTACACCACCCCCACAACGTCATACACCGAGGAACGGAGGT
GATATTAATATCCAACTAAACGATACGACAGATGAAAGTTTACAGGCTAA
ACAACAATTATGTACACCGAAAATCCAGTCTAGCTTTGTATTATGTTGCG
GCTTTTTATGTTTTGGATCGTCCATGGCTATCATTGGTCCAACTGTCCTT
GAACTTGGATGTTTGACTGGGCAAGATGTTGGGGCCATGAGTTGGGTCTT
TTTCGCACAAACTTTTAGTGCTCTATTAGGAGCTATTTTCAGTGGTGTTA
TTACAGATCGGTTTAGTATTAACTACAATATCTTTTTAAGCGTAGTCATG
ATTATACATGGTGCTGCATTATCGATTCTACCCTTTATGAGGACTTTAAG
TTCACTCATTTTCGTAACTTCCATACACGGCTTATTCGCTGGGATCCAAG
ACACGGCAACCAATTTACGTATGATTATAATGCACGGGCAAGACGTACCA
CCGTATCTACaaacacttttctttttttacggTGTAGGAGCGTTTCTTAG
TCCTATCATTGCTGGTAACTTCTTGAACAGTGAATGTAATATGGATCAAA
GTGATGGACTTGGTGACGACTTTGCATTCGCAAAACGTCATGTTATTGCA
CCGCCAAACGGTGTTTCATTATGGGTCAATAACATTGGAACAAGCTTGGC
AACTAATACAAGTACCACAACACTGAACCAAATCACTAAAATTACGACCA
CTCGTATACATTGGGCTTATTTCGTGATCGCGTTACTTCACCTCATAGTC
ACTATAGGGCTGATTTATTTATATTTCGCAGAAAAGAAACGAAAACAAGA
ATTGAACTTATCGTTGGGTATGAGCCGGACAGAATCGAGTATGGATGATA
CAGCTTCCAAAAGCGAACGTAGTGAAATCGACCCGAACATCAAAACACAA
GTTTTGTTCATAAGTTTCTGGATTGCTCTCATGGTCTTCATCTCAGATGG
CCTTCAAGGATCTTTTGGCAGTTATATTTACACATATGCTATCAAAAGTG
GTATAGGGATTGATACAGACAATGCTGCCTTCTTGAACAGTTTATTTTGG
GGTACTCTCGCTCTTGGACGATTattcgccatctttgtttcTATATATGT
GTCGCCACGTGTTATGTTATTAGCTGATGTAGCTGGGTGTTTAATTTCCA
TTATACTCATGTTCTTATTTCGCCACCATGTTATATCCCTATGGATTGGA
ACTGCGTTTTTTGGTTTGTGCTTGAGTAACATATTCCCAACAAGTGTTTC
TATGGCTGAAAGTTATTTCCGATTAACAGGTACAATAacatgtttttttg
ttgtttgttcCGGAATCGGGGAAATGGCCATTCCATTATTAATCGGGaaa
ctttttgacgttattGGACCGATTAGTTTCCTGTCTGTTGGTTGTATCCT
TTGTTTCACATCAGTCGGGATATACATCGCAGTTGTTATCACAGGTAAGG
GGATATCTCAGAGATTGCGGGATATACAACCGACCACTCCAGACTTGATT
GAAGACGATGATGGAACGCTAATGGAAGAATCGGAAGATAGACCGAAACC
GAACGGAAAAAATAACGAGACATTGAATTCTGATGATGTTTTGCATTTAC
AAGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034805XLOC_034805Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055262-proteinTCONS_00055262-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055262-exon-scaffold_251-1491911889:238545..240430TCONS_00055262-exon-scaffold_251-1491911889:238545..240430Clytia hemisphaericaexon
TCONS_00055262-exon-scaffold_251-1510915933:238545..240430TCONS_00055262-exon-scaffold_251-1510915933:238545..240430Clytia hemisphaericaexon
TCONS_00055262-exon-scaffold_251-1575043694:238545..240430TCONS_00055262-exon-scaffold_251-1575043694:238545..240430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:238545..240430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.56764	1.87117	7.80603	8.37736	1.01616	1.08202	3.19357	2.24022	2.91246	2.23559	1.5977	5.37578	3.28744	2.91374	0	0.0235329	1.77953	1.91556	0.776207	1.05853	0.999403	1.78389	0.232067	0.061917	0.0234809	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00055262 vs. Swiss-Prot (Human)
Match: MFD4A (Major facilitator superfamily domain-containing protein 4A OS=Homo sapiens GN=MFSD4A PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 1.151e-52
Identity = 148/515 (28.74%), Postives = 252/515 (48.93%), Query Frame = -1 
Query:   75 FLCFGSSMAIIGPTVLELGCLTGQDVGAMSWVFFAQTFSALLGAIFSGVITDRFSIN-YNIFLSVVMIIHGAALSILPFMRTLSSLIFVTSIHGLFAGIQDTATNLRMIIMHGQDVPPYLQTLFFFYGVGAFLSPIIAGNFLNSECNMDQSDGLGDDFA----------FAKRHVIAPPNGVSLWVNNIGXXXXXXXXXXXXXXXXXXXXTRIHWAYFVIALLHLIVTIGLIYLYFAEK-----KRKQELNLSLGMSRTESSMDDTASKSERSEIDPNIKTQV----LF------------ISFWI-----ALMVFISDGLQGSFGSYIYTYAIKSGIGIDTDNAAFLNSLFWGTLALGRLFAIFVSIYVSPRVMLLADVAGCLISIILMFLFRHHVISLWIGTAFFGLCLSNIFPTSVSMAESYFRLTGTITCFFVVCSGIGEMAIPLLIGKLFDVIGPISFLSVGCILCFTSVGIYIAVVITGKGISQRLRDIQPTTPDLIEDDDGTLMEESE 1508
            F  FG  +A +GPT+L+L C T   +  +SWVFF+Q    LLG+   GV     + + + +F S + I      +++PF R +  L  V ++ GL  G  DT  N++++ M+ +D   +LQ L FF G GA LSP+IA  FL SE N   ++   +  +            + HV A P     W N           T           TR+ +A++++AL++L V + ++ L   E+      +++ L LS      E+   +   K + S + P  ++ +    LF             SF+      AL++F++DGL G++ +++Y+YA++  + +    A +L SLFWG + LGRL +I +S  + P  M+  +V G +++ +++ +F ++V+ L++GTA  GL LS+ FP+ ++  E   +  G  T   V  +G+GEM + +L+G +F   G  SFL  G I    +   YI ++            + P  P +   D    ME SE
Sbjct:   25 FFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSSLAI--SLVFAVIPFCRDVKVLASVMALAGLAMGCIDTVANMQLVRMYQKDSAVFLQVLHFFVGFGALLSPLIADPFL-SEANCLPANSTANTTSRGHLFHVSRVLGQHHVDAKP-----WSNQ----------TFPGLTPKDGAGTRVSYAFWIMALINLPVPMAVLMLLSKERLLTCCPQRRPLLLSADELALETQPPE---KEDASSLPPKFQSHLGHEDLFSCCQRKNLRGAPYSFFAIHITGALVLFMTDGLTGAYSAFVYSYAVEKPLSVGHKVAGYLPSLFWGFITLGRLLSIPISSRMKPATMVFINVVGVVVTFLVLLIFSYNVVFLFVGTASLGLFLSSTFPSMLAYTEDSLQYKGCATTVLVTGAGVGEMVLQMLVGSIFQAQGSYSFLVCGVIFGCLAFTFYILLLF--------FHRMHPGLPSVPTQDRSIGMENSE 510
The following BLAST results are available for this feature:
BLAST of TCONS_00055262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFD4A1.151e-5228.74Major facilitator superfamily domain-containing pr... [more]
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