TCONS_00055264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055264
Unique NameTCONS_00055264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055264 ID=TCONS_00055264|Name=TCONS_00055264|organism=Clytia hemisphaerica|type=transcript|length=320bp
AGAAGGATCAGGGTTGAAGGTCattttccattgatgagcccactCACTAA
CCTTCTGCATGTCACTGTTCAATTCGTTTGAACAGCGAATATGATCAAGG
ATATGATTGATTGATGATTggaaatatcaagaaatacTCCGCGAGTATCT
AGAGGTGGATTTGAATCGAAACCTACCAGGATGTCGTGCGTTATGGACAA
AAGCTGGGACACACGAGAGTCACCCTTGCGGAAACCAGACTGGGAATTAG
TAAAGAGattgttgttttcaaaatagGTGTAAACAGAGTCAAAGatgcat
ttttcaaagattttaccaAA
Run BLAST on NCBI

transcript from alignment at scaffold_251:253703..254022

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055264 ID=TCONS_00055264|Name=TCONS_00055264|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_251:253703..254022 (Clytia hemisphaerica)
TTtggtaaaatctttgaaaaatgcatCTTTGACTCTGTTTACACctattt
tgaaaacaacaatCTCTTTACTAATTCCCAGTCTGGTTTCCGCAAGGGTG
ACTCTCGTGTGTCCCAGCTTTTGTCCATAACGCACGACATCCTGGTAGGT
TTCGATTCAAATCCACCTCTAGATACTCGCGGAgtatttcttgatatttc
cAATCATCAATCAATCATATCCTTGATCATATTCGCTGTTCAAACGAATT
GAACAGTGACATGCAGAAGGTTAGTGagtgggctcatcaatggaaaatGA
CCTTCAACCCTGATCCTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034807XLOC_034807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055264-exon-scaffold_251-1491911889:253703..254022TCONS_00055264-exon-scaffold_251-1491911889:253703..254022Clytia hemisphaericaexon
TCONS_00055264-exon-scaffold_251-1510915933:253703..254022TCONS_00055264-exon-scaffold_251-1510915933:253703..254022Clytia hemisphaericaexon
TCONS_00055264-exon-scaffold_251-1575043694:253703..254022TCONS_00055264-exon-scaffold_251-1575043694:253703..254022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:253703..254022 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14065	1.39104	3.85449	2.55982	0.861944	0.908182	1.51016	1.25593	0.374526	1.87322	1.25533	0	0.212543	0	1.70644	1.754	0	2.09859	2.44242	2.06673	4.12426	2.0135	2.69117	0	0.686238	0.918677	1.58124	1.3205	0.158456	1.82869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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