TCONS_00055267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055267
Unique NameTCONS_00055267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055267 ID=TCONS_00055267|Name=TCONS_00055267|organism=Clytia hemisphaerica|type=transcript|length=479bp
CAGTCAAATGTCGAGGGGTAGCGTTACTCTACTACTAAACAATGAAAAAG
AAAGGAACAAAAAGTAATATTTAATaagagaaaaagttttatttttgata
aaaattatgtcataaactgaatgaaaaaaaaactactcCTGCATAATTAG
TAGCTCTTGGtttcttttgaagtttttctaaaaaataaccTTTAACTAAC
TGCATACCAATATAACAATGTGACAAACTATCTGTAAAAAAAGCCAGTTT
TTTacaaatcagaaaaaatgaaagtCATAATATATTTCATATAATATTCA
AATTCACCGTAAAATACTTTGGTTCCGTACTGTAGCCCATAAATCTCGAT
TTGCTTTCAGTCCaacagaaaaattaaaatgcaaCTGATTGTAAGAAGCT
TAGAAATAAGAACGAAACATTAGCACAATCTTCTTGGAAGTGTCATTTTA
CTGAATTAACAGGCTTAAGAGAGAAGATT
Run BLAST on NCBI

transcript from alignment at scaffold_251:415522..416000

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055267 ID=TCONS_00055267|Name=TCONS_00055267|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_251:415522..416000 (Clytia hemisphaerica)
AATCTTCTCTCTTAAGCCTGTTAATTCAGTAAAATGACACTTCCAAGAAG
ATTGTGCTAATGTTTCGTTCTTATTTCTAAGCTTCTTACAATCAGttgca
ttttaatttttctgttGGACTGAAAGCAAATCGAGATTTATGGGCTACAG
TACGGAACCAAAGTATTTTACGGTGAATTTGAATATTATATGAAATATAT
TATGactttcattttttctgatttgtAAAAAACTGGCTTTTTTTACAGAT
AGTTTGTCACATTGTTATATTGGTATGCAGTTAGTTAAAggttatttttt
agaaaaacttcaaaagaaaCCAAGAGCTACTAATTATGCAGgagtagttt
ttttttcattcagtttatgacataatttttatcaaaaataaaactttttc
tcttATTAAATATTACTTTTTGTTCCTTTCTTTTTCATTGTTTAGTAGTA
GAGTAACGCTACCCCTCGACATTTGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034810XLOC_034810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055267-exon-scaffold_251-1491911889:415522..416000TCONS_00055267-exon-scaffold_251-1491911889:415522..416000Clytia hemisphaericaexon
TCONS_00055267-exon-scaffold_251-1510915933:415522..416000TCONS_00055267-exon-scaffold_251-1510915933:415522..416000Clytia hemisphaericaexon
TCONS_00055267-exon-scaffold_251-1575043694:415522..416000TCONS_00055267-exon-scaffold_251-1575043694:415522..416000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:415522..416000 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.17988	1.6314	6.17536	7.68847	0.356038	0.140813	0.337868	0.1593	0.111701	0	0.142871	0	0.183685	0.366117	0	0	0	0	0	0	2.4934	2.10836	3.99481	3.95519	0.143647	0.379271	2.2992	3.30921	4.24597	2.98581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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