TCONS_00055269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055269
Unique NameTCONS_00055269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055269 ID=TCONS_00055269|Name=TCONS_00055269|organism=Clytia hemisphaerica|type=transcript|length=729bp
atCCGATAATATTCTCTGCTATCCATAAAAAAGGTGactaaagcctggga
tacacggggacaaGGTAGCTTGTGTGTAATTTTGAGCTCAAACGCAAAAA
CATTAGAGGTTAAAACTCATAGTTTGATCACTAAAGAAATGGCTACTTAT
TTTTAGTATGAAATTGAAGTAAAATTGAATTTATAattgaagaaattcaa
aaatcgctttttaaaTCAGCTCGCCATAGCTAAAAACCAAAATCAGAGAT
GTCATCGTCACCCGAGGTATTAATTCAAGAGCTTGAAGAGACAAGAGAAA
AAGCTTTGCAATTCGAACGCACCGCAAGATGGTGGAATGAGTCGTGCGTG
AAATGGCGCGAAAAATGGGGTAAAGAAAATGCAGAGAAAAACAGACTTat
cgaaaaaattgaaaacttaaaCGGGCGAAACCGTGCTTTGATAGTTGAGT
TTCAACGTGTACAATgcgaaaatgcaaaattaaattcttacATCAGACAA
CAAGAGGGGTTTAAAAAAGACATTGAACAGACTGTCAACCGAGCTTTAAA
TATCCCTGAAGATATCAAAGAAGTAGATGAAGAGAGAAGAGTTGCAAGGG
TAGAACCAATTGTTGAGGATATACGTTTAGCAAAAACAATGAATAATGCA
TCACCGACAACATCGATAAGATCAAGTACGGGGAAACTTTCTTTTAGTCC
ACTGAACGAAGTCCAGGATAGCTTTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00055269-protein

>TCONS_00055269-protein ID=TCONS_00055269-protein|Name=TCONS_00055269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MSSSPEVLIQELEETREKALQFERTARWWNESCVKWREKWGKENAEKNRL
IEKIENLNGRNRALIVEFQRVQCENAKLNSYIRQQEGFKKDIEQTVNRAL
NIPEDIKEVDEERRVARVEPIVEDIRLAKTMNNASPTTSIRSSTGKLSFS
PLNEVQDSFE
Run BLAST on NCBI

transcript from alignment at scaffold_251:475121..475849

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055269 ID=TCONS_00055269|Name=TCONS_00055269|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at scaffold_251:475121..475849 (Clytia hemisphaerica)
GTTCAAAGCTATCCTGGACTTCGTTCAGTGGACTAAAAGAAAGTTTCCCC
GTACTTGATCTTATCGATGTTGTCGGTGATGCATTATTCATTGTTTTTGC
TAAACGTATATCCTCAACAATTGGTTCTACCCTTGCAACTCTTCTCTCTT
CATCTACTTCTTTGATATCTTCAGGGATATTTAAAGCTCGGTTGACAGTC
TGTTCAATGTCTTTTTTAAACCCCTCTTGTTGTCTGATgtaagaatttaa
ttttgcattttcgcATTGTACACGTTGAAACTCAACTATCAAAGCACGGT
TTCGCCCGtttaagttttcaattttttcgatAAGTCTGTTTTTCTCTGCA
TTTTCTTTACCCCATTTTTCGCGCCATTTCACGCACGACTCATTCCACCA
TCTTGCGGTGCGTTCGAATTGCAAAGCTTTTTCTCTTGTCTCTTCAAGCT
CTTGAATTAATACCTCGGGTGACGATGACATCTCTGATTTTGGTTTTTAG
CTATGGCGAGCTGAtttaaaaagcgatttttgaatttcttcaatTATAAA
TTCAATTTTACTTCAATTTCATACTAAAAATAAGTAGCCATTTCTTTAGT
GATCAAACTATGAGTTTTAACCTCTAATGTTTTTGCGTTTGAGCTCAAAA
TTACACACAAGCTACCttgtccccgtgtatcccaggctttagtCACCTTT
TTTATGGATAGCAGAGAATATTATCGGat

Coding sequence (CDS) from alignment at scaffold_251:475121..475849

>TCONS_00055269 ID=TCONS_00055269|Name=TCONS_00055269|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_251:475121..475849 (Clytia hemisphaerica)
TTCAAAGCTATCCTGGACTTCGTTCAGTGGACTAAAAGAAAGTTTCCCCG
TACTTGATCTTATCGATGTTGTCGGTGATGCATTATTCATTGTTTTTGCT
AAACGTATATCCTCAACAATTGGTTCTACCCTTGCAACTCTTCTCTCTTC
ATCTACTTCTTTGATATCTTCAGGGATATTTAAAGCTCGGTTGACAGTCT
GTTCAATGTCTTTTTTAAACCCCTCTTGTTGTCTGATgtaagaatttaat
tttgcattttcgcATTGTACACGTTGAAACTCAACTATCAAAGCACGGTT
TCGCCCGtttaagttttcaattttttcgatAAGTCTGTTTTTCTCTGCAT
TTTCTTTACCCCATTTTTCGCGCCATTTCACGCACGACTCATTCCACCAT
CTTGCGGTGCGTTCGAATTGCAAAGCTTTTTCTCTTGTCTCTTCAAGCTC
TTGAATTAATACCTCGGGTGACGATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034812XLOC_034812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055269-proteinTCONS_00055269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055269-exon-scaffold_251-1491911889:475121..475849TCONS_00055269-exon-scaffold_251-1491911889:475121..475849Clytia hemisphaericaexon
TCONS_00055269-exon-scaffold_251-1510915933:475121..475849TCONS_00055269-exon-scaffold_251-1510915933:475121..475849Clytia hemisphaericaexon
TCONS_00055269-exon-scaffold_251-1575043694:475121..475849TCONS_00055269-exon-scaffold_251-1575043694:475121..475849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:475121..475849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0755765	0	0	6.47533	6.26333	1.38774	1.52363	1.38444	1.36288	0.693754	0.135698	0.565096	0.0634798	0.788923	0.44978	1.12389	1.39046	0.489219	1.51673	0.443937	0.670379	1.6166	1.45205	1.093	0.822665	0	0.0771528
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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