TCONS_00055271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055271
Unique NameTCONS_00055271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055271 ID=TCONS_00055271|Name=TCONS_00055271|organism=Clytia hemisphaerica|type=transcript|length=305bp
catcGGCAGTCTTTATTTAGTAAAATACAGACCTTAAAATGAACAAGATA
ACATTATATTCAGAAATGGCCTCTGAAAatcacaataaaaaaagaaaaca
atgtaCGTGtcatttcatattattcctcaaaaaaaaatatttacaaacaa
GTAAATAGATAAAACACCTTTAAGTCCATGTTTCAAAAGCTGCGCAAAAA
GAAGATTGGGATTGAGTTTATTTTATGAGGTCAAATGAcgtcaattcatg
atatgcaccactgcaatgacttcacgagattatgcaacttttctgttgtt
ttttc
Run BLAST on NCBI

transcript from alignment at scaffold_251:497470..497774

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055271 ID=TCONS_00055271|Name=TCONS_00055271|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_251:497470..497774 (Clytia hemisphaerica)
gaaaaaacaacagaaaagttgcataatctcgtgaagtcattgcagtggtg catatcatgaattgacgTCATTTGACCTCATAAAATAAACTCAATCCCAA TCTTCTTTTTGCGCAGCTTTTGAAACATGGACTTAAAGGTGTTTTATCTA TTTACttgtttgtaaatatttttttttgaggaataatatgaaatgaCACG tacattgttttctttttttattgtgatTTTCAGAGGCCATTTCTGAATAT AATGTTATCTTGTTCATTTTAAGGTCTGTATTTTACTAAATAAAGACTGC Cgatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034814XLOC_034814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055271-exon-scaffold_251-1491911889:497470..497774TCONS_00055271-exon-scaffold_251-1491911889:497470..497774Clytia hemisphaericaexon
TCONS_00055271-exon-scaffold_251-1510915933:497470..497774TCONS_00055271-exon-scaffold_251-1510915933:497470..497774Clytia hemisphaericaexon
TCONS_00055271-exon-scaffold_251-1575043694:497470..497774TCONS_00055271-exon-scaffold_251-1575043694:497470..497774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:497470..497774 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (2.16058 tpm) - - (29.8479 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.75466 2.16058 7.1078 9.11211 21.9137 13.7588 27.6152 29.8479 13.0694 19.6576 16.8354 11.836 11.9172 10.4759 7.98406 10.3648 12.7516 10.4729 11.7763 17.6933 13.5683 17.6635 9.73814 12.9113 8.34637 15.2151 16.5484 9.47345 12.4398 12.5581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
catcGGCAGTCTTTATTTAGTAAAATACAGACCTTAAAATGAACAAGATAACATTATATTCAGAAATGGCCTCTGAAAatcacaataaaaaaagaaaacaatgtaCGTGtcatttcatattattcctcaaaaaaaaatatttacaaacaaGTAAATAGATAAAACACCTTTAAGTCCATGTTTCAAAAGCTGCGCAAAAAGAAGATTGGGATTGAGTTTATTTTATGAGGTCAAATGAcgtcaattcatgatatgcaccactgcaatgacttcacgagattatgcaacttttctgttgttttttc50100150200250300Sequence
Match NameE-valueIdentityDescription
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