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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055273 ID=TCONS_00055273|Name=TCONS_00055273|organism=Clytia hemisphaerica|type=transcript|length=1435bp
ATATGATAGTAGATACCTTTgaacttctttatttttcagaattttgctaa
aaaacaattaaatatcGAACAAAATGCTTTGTCGGAGACATGGTCGGCCA
TCAACTTTAGTTTTGATTACGATTCTACAGATGGCAGctcttgttttttt
ctttggcATCACAACCCATCTCCATAGTAACGTTGATTCATCCGTTAAAA
CCAATATTCAGCAGGTGAGAAACGAGTTATCATAtcgttttcatcaaaaa
atcgAATCCGTAAAAACAATAGTAAGAATTGATCCATCATTAAAACCAAG
GAATATTAAACTACTGAACCTGCAAGATATTCAACCTTTTCGAGgtaatt
ttctctttttggtGAATTCGAATATCGGTAATAAAGAACGTAGAACATCA
ATTCGCAAGCATTGGGCTAACCAAACAAAATTTAATCAACAtcgaaaaaa
attccataatgtGAGTTTCAAAGCATACTTTATGACTGGCTTCAAGGCTG
AAAAATTCGATTTGGCGAAAACGGAATCGGTAAAATATGGAGATTTATTG
ATAACAAATCGAACTGAAGATTATTGGGATTTTTCTAGACGCGCTATGAT
AAGTTTCTATTGGACAATTGAGAATTGTAACTATGATTACCTTCTCAAAG
CAGATGATGACATTTTTATACATATTCCGAATTTATTTACGTTTTTATAT
AAAGACCCGTACGTATTGAAACATCATGACCGTTTATACGCCGGCTATAT
CATTATGCACGGAAAACCGCACCGTAACCTCAAATTTAAATGGGGCGTTA
CATACGAAGAATGGGGCGCTGATGCATACCCGCCCTTCTCAACAGGGATG
GGTTTTATATTATCTCGATTTATCATAGAGAAAATGATACCTCATTTTGA
TTGGGAAAAACCGTTTCGAGTTGATGACGTGTATATAGGGCATTTGGTAT
ACATGGCGCAAATATCGAATATAGGAATACGGAATAGTGTCGGTCAAGAA
TTTTCGAGGTTTAACGACCCTAAAAAATGCCCTATTCAAAGTAAAGCTAT
TGTTTATCATCAAGTCTTAACTGAAGACTGTATGCGGAAGCTAACAGAGT
CTAGTTTGAAAGTAAAATAAGATAAATGGCATGAAAATTAGTATATAATA
TTTCCTATTCGTAGAATCTTCttatagattttattttgaaattctagAAT
TTATTGTatacgctttttcttttatttttggtatttttgcgTCAATTTTT
AAATGTAATTAAATTAAAAACTGGCTTACTCGAAAAGATGGGAAAGGCTA
TATCTTTAAAATTTGGACAAGACAAAAAAATCGTACCATTCAGTAAATTT
GTAAGTTTCATCCGATTTctacaaaatattttgagaatcaTTACTGAATC
TGAGTTCATTTTCGTTGTAGAGTGGTAAACGCGAG Run BLAST on NCBI protein sequence of TCONS_00055273-protein >TCONS_00055273-protein ID=TCONS_00055273-protein|Name=TCONS_00055273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MLCRRHGRPSTLVLITILQMAALVFFFGITTHLHSNVDSSVKTNIQQVRN
ELSYRFHQKIESVKTIVRIDPSLKPRNIKLLNLQDIQPFRGNFLFLVNSN
IGNKERRTSIRKHWANQTKFNQHRKKFHNVSFKAYFMTGFKAEKFDLAKT
ESVKYGDLLITNRTEDYWDFSRRAMISFYWTIENCNYDYLLKADDDIFIH
IPNLFTFLYKDPYVLKHHDRLYAGYIIMHGKPHRNLKFKWGVTYEEWGAD
AYPPFSTGMGFILSRFIIEKMIPHFDWEKPFRVDDVYIGHLVYMAQISNI
GIRNSVGQEFSRFNDPKKCPIQSKAIVYHQVLTEDCMRKLTESSLKVK Run BLAST on NCBI transcript from alignment at scaffold_251:505044..506478 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055273 ID=TCONS_00055273|Name=TCONS_00055273|organism=Clytia hemisphaerica|type=transcript|length=1435bp|location=Sequence derived from alignment at scaffold_251:505044..506478 (Clytia hemisphaerica)
CTCGCGTTTACCACTCTACAACGAAAATGAACTCAGATTCAGTAAtgatt
ctcaaaatattttgtagAAATCGGATGAAACTTACAAATTTACTGAATGG
TACGATTTTTTTGTCTTGTCCAAATTTTAAAGATATAGCCTTTCCCATCT
TTTCGAGTAAGCCAGTTTTTAATTTAATTACATTTAAAAATTGAcgcaaa
aataccaaaaataaaagaaaaagcgtatACAATAAATTctagaatttcaa
aataaaatctataaGAAGATTCTACGAATAGGAAATATTATATACTAATT
TTCATGCCATTTATCTTATTTTACTTTCAAACTAGACTCTGTTAGCTTCC
GCATACAGTCTTCAGTTAAGACTTGATGATAAACAATAGCTTTACTTTGA
ATAGGGCATTTTTTAGGGTCGTTAAACCTCGAAAATTCTTGACCGACACT
ATTCCGTATTCCTATATTCGATATTTGCGCCATGTATACCAAATGCCCTA
TATACACGTCATCAACTCGAAACGGTTTTTCCCAATCAAAATGAGGTATC
ATTTTCTCTATGATAAATCGAGATAATATAAAACCCATCCCTGTTGAGAA
GGGCGGGTATGCATCAGCGCCCCATTCTTCGTATGTAACGCCCCATTTAA
ATTTGAGGTTACGGTGCGGTTTTCCGTGCATAATGATATAGCCGGCGTAT
AAACGGTCATGATGTTTCAATACGTACGGGTCTTTATATAAAAACGTAAA
TAAATTCGGAATATGTATAAAAATGTCATCATCTGCTTTGAGAAGGTAAT
CATAGTTACAATTCTCAATTGTCCAATAGAAACTTATCATAGCGCGTCTA
GAAAAATCCCAATAATCTTCAGTTCGATTTGTTATCAATAAATCTCCATA
TTTTACCGATTCCGTTTTCGCCAAATCGAATTTTTCAGCCTTGAAGCCAG
TCATAAAGTATGCTTTGAAACTCacattatggaatttttttcgaTGTTGA
TTAAATTTTGTTTGGTTAGCCCAATGCTTGCGAATTGATGTTCTACGTTC
TTTATTACCGATATTCGAATTCaccaaaaagagaaaattacCTCGAAAAG
GTTGAATATCTTGCAGGTTCAGTAGTTTAATATTCCTTGGTTTTAATGAT
GGATCAATTCTTACTATTGTTTTTACGGATTcgattttttgatgaaaacg
aTATGATAACTCGTTTCTCACCTGCTGAATATTGGTTTTAACGGATGAAT
CAACGTTACTATGGAGATGGGTTGTGATgccaaagaaaaaaacaagagCT
GCCATCTGTAGAATCGTAATCAAAACTAAAGTTGATGGCCGACCATGTCT
CCGACAAAGCATTTTGTTCgatatttaattgttttttagcaaaattctga
aaaataaagaagttcAAAGGTATCTACTATCATAT Coding sequence (CDS) from alignment at scaffold_251:505044..506478 >TCONS_00055273 ID=TCONS_00055273|Name=TCONS_00055273|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_251:505044..506478 (Clytia hemisphaerica)
TTATTTTACTTTCAAACTAGACTCTGTTAGCTTCCGCATACAGTCTTCAG
TTAAGACTTGATGATAAACAATAGCTTTACTTTGAATAGGGCATTTTTTA
GGGTCGTTAAACCTCGAAAATTCTTGACCGACACTATTCCGTATTCCTAT
ATTCGATATTTGCGCCATGTATACCAAATGCCCTATATACACGTCATCAA
CTCGAAACGGTTTTTCCCAATCAAAATGAGGTATCATTTTCTCTATGATA
AATCGAGATAATATAAAACCCATCCCTGTTGAGAAGGGCGGGTATGCATC
AGCGCCCCATTCTTCGTATGTAACGCCCCATTTAAATTTGAGGTTACGGT
GCGGTTTTCCGTGCATAATGATATAGCCGGCGTATAAACGGTCATGATGT
TTCAATACGTACGGGTCTTTATATAAAAACGTAAATAAATTCGGAATATG
TATAAAAATGTCATCATCTGCTTTGAGAAGGTAATCATAGTTACAATTCT
CAATTGTCCAATAGAAACTTATCATAGCGCGTCTAGAAAAATCCCAATAA
TCTTCAGTTCGATTTGTTATCAATAAATCTCCATATTTTACCGATTCCGT
TTTCGCCAAATCGAATTTTTCAGCCTTGAAGCCAGTCATAAAGTATGCTT
TGAAACTCacattatggaatttttttcgaTGTTGATTAAATTTTGTTTGG
TTAGCCCAATGCTTGCGAATTGATGTTCTACGTTCTTTATTACCGATATT
CGAATTCaccaaaaagagaaaattacCTCGAAAAGGTTGAATATCTTGCA
GGTTCAGTAGTTTAATATTCCTTGGTTTTAATGATGGATCAATTCTTACT
ATTGTTTTTACGGATTcgattttttgatgaaaacgaTATGATAACTCGTT
TCTCACCTGCTGAATATTGGTTTTAACGGATGAATCAACGTTACTATGGA
GATGGGTTGTGATgccaaagaaaaaaacaagagCTGCCATCTGTAGAATC
GTAATCAAAACTAAAGTTGATGGCCGACCATGTCTCCGACAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055273-exon-scaffold_251-1491911889:505044..506478 | TCONS_00055273-exon-scaffold_251-1491911889:505044..506478 | Clytia hemisphaerica | exon |
| TCONS_00055273-exon-scaffold_251-1510915933:505044..506478 | TCONS_00055273-exon-scaffold_251-1510915933:505044..506478 | Clytia hemisphaerica | exon |
| TCONS_00055273-exon-scaffold_251-1575043694:505044..506478 | TCONS_00055273-exon-scaffold_251-1575043694:505044..506478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:505044..506478 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00055273 vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.801e-22 Identity = 59/212 (27.83%), Postives = 104/212 (49.06%), Query Frame = 2
Query: 350 FLFLVNSNIGNKERRTSIRKHWANQTKFNQHRKKFHNVSFKAYFMTGF--KAEKFDLAKTESVKYGDLLITNRTEDYWDFSRRAMISFYWTIENC-NYDYLLKADDDIFIHIPNLFTFLYK-DPYVLKHHDRLYAGYIIMHGKPHRNLKFKWGVTYEEWGADAYPPFSTGMGFILSRFIIEKMIPHFDWEKPFRVDDVYIGHLVYMAQISNI 973
L + S G+ ERR +IR W + + R+ K F+ G A L ES ++ D+L + TED+++ + + + W + C ++LK DDD+F+H+PN+ FL DP L G +I P+RN K K+ + + A YPP++ G G+++SR + ++ + + F +DDV++G + +S +
Sbjct: 120 LLLAIKSQPGHVERRAAIRSTWGRVGGWARGRQ------LKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPA-----QDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPM 320
The following BLAST results are available for this feature:
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