TCONS_00055279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055279
Unique NameTCONS_00055279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055279 ID=TCONS_00055279|Name=TCONS_00055279|organism=Clytia hemisphaerica|type=transcript|length=512bp
TCTCGATCGAGGTGATCTTTTTGTCCAGTGTCTCCATGATTTCTTCCTTC
ATCAGACGGACAATCTCTAAAAAATGATCTGGTTCAGAGGATTTGATCTC
ATCATCTTTTTCTGCTAATAGCTTGCTGTTGTTGTGAGTTACTGTGTTTT
TAACCATAATGGGTTCTCTTCTGGTTCCCTTCACATGAACGAAACGGCAG
GATGTTGCGAAACATTCTCCTTTTCGTATTGAGTCGAAGCACATTTTGGG
ATGGAaatctttacatttttttccaagattgCATCCTCTTTGTTNNNNNN
NNNNNNNCTCTAATAATTCTGTTGGTCTGTCTTGACTTGGGATAGATGGT
GCAGCATCTTTagtgacttttttctttttccttttattgTCACCGTCACT
GCCTCTTGGGATTGTGTTAGGTTGACAAGCATGACAAATGTAGAACATGC
CAGGTAGATTTAGAGGGTTATACAAGCTTTTGAAGAGTTCAGCGTCGGTG
TCCTCATCAANN
Run BLAST on NCBI

protein sequence of TCONS_00055279-protein

>TCONS_00055279-protein ID=TCONS_00055279-protein|Name=TCONS_00055279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
XDEDTDAELFKSLYNPLNLPGMFYICHACQPNTIPRGSDGDNKRKKKKVT
KDAAPSIPSQDRPTELLEXXXXXQRGCNLGKKCKDFHPKMCFDSIRKGEC
FATSCRFVHVKGTRREPIMVKNTVTHNNSKLLAEKDDEIKSSEPDHFLEI
VRLMKEEIMETLDKKITSIE
Run BLAST on NCBI

transcript from alignment at scaffold_251:704237..704748

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055279 ID=TCONS_00055279|Name=TCONS_00055279|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_251:704237..704748 (Clytia hemisphaerica)
NNTTGATGAGGACACCGACGCTGAACTCTTCAAAAGCTTGTATAACCCTC
TAAATCTACCTGGCATGTTCTACATTTGTCATGCTTGTCAACCTAACACA
ATCCCAAGAGGCAGTGACGGTGAcaataaaaggaaaaagaaaaaagtcac
tAAAGATGCTGCACCATCTATCCCAAGTCAAGACAGACCAACAGAATTAT
TAGAGNNNNNNNNNNNNNAACAAAGAGGATGcaatcttggaaaaaaatgt
aaagattTCCATCCCAAAATGTGCTTCGACTCAATACGAAAAGGAGAATG
TTTCGCAACATCCTGCCGTTTCGTTCATGTGAAGGGAACCAGAAGAGAAC
CCATTATGGTTAAAAACACAGTAACTCACAACAACAGCAAGCTATTAGCA
GAAAAAGATGATGAGATCAAATCCTCTGAACCAGATCATTTTTTAGAGAT
TGTCCGTCTGATGAAGGAAGAAATCATGGAGACACTGGACAAAAAGATCA
CCTCGATCGAGA

Coding sequence (CDS) from alignment at scaffold_251:704237..704748

>TCONS_00055279 ID=TCONS_00055279|Name=TCONS_00055279|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_251:704237..704748 (Clytia hemisphaerica)
NTTGATGAGGACACCGACGCTGAACTCTTCAAAAGCTTGTATAACCCTCT
AAATCTACCTGGCATGTTCTACATTTGTCATGCTTGTCAACCTAACACAA
TCCCAAGAGGCAGTGACGGTGAcaataaaaggaaaaagaaaaaagtcact
AAAGATGCTGCACCATCTATCCCAAGTCAAGACAGACCAACAGAATTATT
AGAGNNNNNNNNNNNNNAACAAAGAGGATGcaatcttggaaaaaaatgta
aagattTCCATCCCAAAATGTGCTTCGACTCAATACGAAAAGGAGAATGT
TTCGCAACATCCTGCCGTTTCGTTCATGTGAAGGGAACCAGAAGAGAACC
CATTATGGTTAAAAACACAGTAACTCACAACAACAGCAAGCTATTAGCAG
AAAAAGATGATGAGATCAAATCCTCTGAACCAGATCATTTTTTAGAGATT
GTCCGTCTGATGAAGGAAGAAATCATGGAGACACTGGACAAAAAGATCAC
CTCGATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034822XLOC_034822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055279-proteinTCONS_00055279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055279-exon-scaffold_251-1491911889:704237..704748TCONS_00055279-exon-scaffold_251-1491911889:704237..704748Clytia hemisphaericaexon
TCONS_00055279-exon-scaffold_251-1510915933:704237..704748TCONS_00055279-exon-scaffold_251-1510915933:704237..704748Clytia hemisphaericaexon
TCONS_00055279-exon-scaffold_251-1575043694:704237..704748TCONS_00055279-exon-scaffold_251-1575043694:704237..704748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:704237..704748 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42357	1.32725	3.03381	1.2678	2.63621	1.69557	1.4922	2.38926	1.64222	2.24752	1.53229	2.07395	1.95959	1.28836	0.398919	1.03214	0.507746	0.677891	0	0.251701	1.0346	1.29367	0.134251	1.17683	1.92796	0.900593	1.37954	1.09071	0.857671	1.13464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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