TCONS_00055295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055295
Unique NameTCONS_00055295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055295 ID=TCONS_00055295|Name=TCONS_00055295|organism=Clytia hemisphaerica|type=transcript|length=737bp
cccccgggaggcaatcaaaattatatttggtTGGGTTACCCAAAGAGCAC
TGGAAAGGTTTAGAAAAGTGGAGACAAATAAAGTCTTTTGAGTAAAAGTT
GGGGAAATTCGGTCATGTTAACCTTAATGGACAAAAGTATTGTAGAATAT
GATCGTTTTTGAACCGAGTGCCCCCCCGGATATATTCCTGGTGAAAGAAA
ATTATCCTCTGTTGTTAAATCTATAACATTAACAAATCATCATTGATTGT
TCGTAATCATTTAAAGATGTATCTTCCTGTTCCGTTTGTTATTCCCTTGA
AACCATTGAAAACCATCAGGTTAAAACCAAGTTTTCTGTATCTCCACCAC
CGTTCAATATACTGGTAAATTCGATTGCCAAACGATAAAACTAAATTCTA
CTATCCCATTAACCATTCGATAACGTCATTTGTCAAGTTTCGTACAATTA
AATCTTCAATAAATGATTCTTTAGGGAGCAATTTGAAAATCTGCCCATTC
AATCTGTCTTTTCAGTTTGTCAATATTATACTTTTTTAAGTGTATTAAAT
TCCATTggtactactttaggcgtacaaactttcgcgagcagaaactttcg
cgaggacgaaaaatcgcgaaattcacgacatttactttcgcgaatttaac
ggaaaaatatttttcgcgagcataaactttcgcgaatcaagacgtaaaat
tgagaattttcatatgaaaaaatggcttagagggact
Run BLAST on NCBI

transcript from alignment at scaffold_251:868278..869014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055295 ID=TCONS_00055295|Name=TCONS_00055295|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at scaffold_251:868278..869014 (Clytia hemisphaerica)
agtccctctaagccattttttcatatgaaaattctcaattttacgtcttg
attcgcgaaagtttatgctcgcgaaaaatatttttccgttaaattcgcga
aagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaaagtttctgc
tcgcgaaagtttgtacgcctaaagtagtaccAATGGAATTTAATACACTT
AAAAAAGTATAATATTGACAAACTGAAAAGACAGATTGAATGGGCAGATT
TTCAAATTGCTCCCTAAAGAATCATTTATTGAAGATTTAATTGTACGAAA
CTTGACAAATGACGTTATCGAATGGTTAATGGGATAGTAGAATTTAGTTT
TATCGTTTGGCAATCGAATTTACCAGTATATTGAACGGTGGTGGAGATAC
AGAAAACTTGGTTTTAACCTGATGGTTTTCAATGGTTTCAAGGGAATAAC
AAACGGAACAGGAAGATACATCTTTAAATGATTACGAACAATCAATGATG
ATTTGTTAATGTTATAGATTTAACAACAGAGGATAATTTTCTTTCACCAG
GAATATATCCGGGGGGGCACTCGGTTCAAAAACGATCATATTCTACAATA
CTTTTGTCCATTAAGGTTAACATGACCGAATTTCCCCAACTTTTACTCAA
AAGACTTTATTTGTCTCCACTTTTCTAAACCTTTCCAGTGCTCTTTGGGT
AACCCAaccaaatataattttgattgcctcccggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034838XLOC_034838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055295-exon-scaffold_251-1491911889:868278..869014TCONS_00055295-exon-scaffold_251-1491911889:868278..869014Clytia hemisphaericaexon
TCONS_00055295-exon-scaffold_251-1510915933:868278..869014TCONS_00055295-exon-scaffold_251-1510915933:868278..869014Clytia hemisphaericaexon
TCONS_00055295-exon-scaffold_251-1575043694:868278..869014TCONS_00055295-exon-scaffold_251-1575043694:868278..869014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:868278..869014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0792	20.8209	10.0617	14.617	33.5422	21.886	35.4875	40.4108	23.5608	19.2369	19.3624	20.2186	17.3047	12.3121	13.6908	17.9693	23.516	17.3746	9.75787	12.5644	22.6734	19.0744	18.5803	18.0534	13.748	17.8651	20.6682	12.8582	15.6959	13.5671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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