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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055348 ID=TCONS_00055348|Name=TCONS_00055348|organism=Clytia hemisphaerica|type=transcript|length=1213bp
CAGAAACACACAATTTACCATGGTATAAAAAATTCGAAGAATGGCGGGAT
TGGAGTGAAGCCAATAAATAATTTAACGACCCTTCCTTTTGATTGaggaa
aaaatttgaatgacgtTTAGGTTTGATATGAATAAATAACGCTTCAATCA
GCAGAAAATGATTATGAAACGAGATAGTTGAGAAATAGGAAGAGAAGCAG
ACACTTGTTTTCATCTTTACACTTAAGAGAATGGATATACAGCGCCGTGA
GAGTAGCAATATAACTTGGAAATGGCAAAAGATCACTACAACGTTGCTTT
TGATATGGATGGTGCTTGCCACGGTGGCTGGTGGATTTTACGTCAACGAT
GTCAACNGAGAGAATGGATATGCAGCGCCGTGAGAGTAGCAATATAACTT
GGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGGTGCTT
GCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGG
AATTgagagatttcaaaaaatctcaatGTATAATTTGAAGAAGTTGTTTT
TATTCCCGGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTTAGGT
TACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGAATTAAATTAGC
ACTcgatattttaaacattttgttcaGAGCAGCAATGATTTATTTGTTGG
GAAAGCTTTATGTACCAGCATATGGTAAATGTGCTTTGAAGCGACCAAGA
GGTGTTTCATACAATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCGTG
CTACACGGACACGATACATCGCATCCGGTTAGAGTTTGGTTTGCTTATAG
TGATATTGGTGATGGAAATCTTATCTTTGGTGACACTCTTTGTGTCTTGT
ATTCTTTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGA
AAGCAATAGGGTGAGGTATGAAATAGGACAAGAGAATGTTTTGCTCCAAG
CTAatgataccttaagggaagaaattttcgcgagaagaaattttcgcgga
agaaattttcgcggaatttaatttcgcgaattggggcgaaacacaccaaa
attgttaaatcgcgaaattaaattccgcgaaattcgattttttttcttct
tcttttattttgttgtttttgaccaggtgttaccaaaaaatatggacaca
attaatttttaag Run BLAST on NCBI protein sequence of TCONS_00055348-protein >TCONS_00055348-protein ID=TCONS_00055348-protein|Name=TCONS_00055348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MSXERMDMQRRESSNITWKWQKITTTLLLIWMVLATVAGGFYVNDVNSYE
GIERFQKISMYNLKKLFLFPAWTSLTLIFNVLLGYIGVLTRKRSYIRIKL
ALDILNILFRAAMIYLLGKLYVPAYGKCALKRPRGVSYNSCCEDEPFRIP
CYTDTIHRIRLEFGLLIVILVMEILSLVTLFVSCILYCTKCNENCAARHM
ESNRVRYEIGQENVLLQANDTLREEIFARRNFRGRNFRGI Run BLAST on NCBI transcript from alignment at scaffold_253:518850..524675+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055348 ID=TCONS_00055348|Name=TCONS_00055348|organism=Clytia hemisphaerica|type=transcript|length=5826bp|location=Sequence derived from alignment at scaffold_253:518850..524675+ (Clytia hemisphaerica)
CAGAAACACACAATTTACCATGGTATAAAAAATTCGAAGAATGGCGGGAT
TGGAGTGAAGCCAATAAATAATTTAACGACCCTTCCTTTTGATTGaggaa
aaaatttgaatgacgtTTAGGTTTGATATGAATAAATAACGCTTCAATCA
GCAGAAAATGATTATGAAACGAGATAGTTGAGAAATAGGAAGAGAAGCAG
ACACTTGTTTTCATCTTTACACTTAAGAGAATGGATATACAGCGCCGTGA
GAGTAGCAATATAACTTGGAAATGGCAAAAGATCACTACAACGTTGCTTT
TGATATGGATGGTGCTTGCCACGGTGGCTGGTGGATTTTACGTCAACGAT
GTCAACNGAGAGAATGGATATGCAGCGCCGTGAGAGTAGCAATATAACTT
GGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGGTGCTT
GCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAAGG
AATTgagagatttcaaaaaatctcaatGTATAATTTGAAGAAGTTGTTTT
TATTCCCGGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTTAGGT
TACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGAATTAAATTAGC
ACTcgatattttaaacattttgttcaGAGCAGCAATGATTTATTTGTTGG
GAAAGCTTTATGTACCAGCATATGGTAAATGTGCTTTGAAGCGACCAAGA
GGTGTTTCATACAATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCGTG
CTACACGGACACGATACATCGCATCCGGTTAGAGTTTGGTTTGCTTATAG
TGATATTGGTGATGGAAATCTTTTCTTTGGCGACACTCTTTGTGTCTTGT
ATTCTCTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATGGA
AAGCAATAGGGTGAGGTATGAAATAAGACAAGAGAATGTTTTGCTCCAAG
CTAATGATAACCATGTTTAGATATGTAAGTGTGACACATGAGACTGAATC
TTATGGAAAGATAAAGACATATGGAAAGCAATAAGAGACAGAATATCTTG
CTTGAAAACTAATGATCATAAAAAGTTTGATATGTGATGGTGGATAAACC
ACAAGCTAcgttttttaacaaatttattCATTGAATCATTTATAATTCAG
TTTATATTGCAGTTGATAACCAACTCATTTGTAAGAATATTTATACATCA
GTTTTACACAgactctttttgaaatttgactcGACTCTATGCACCAGTGT
TTCATCAGCAAAAAATTGCAACAATAAGAAAGCCTGGCGGCTTTGagatt
acacatttttttaataagtaaCCAAGTTGGTAAGGTTCGAGCCCTGAAAT
TAgccaaaaattatttcactATCTCTTAAAGTAAAATCTTTTTAGTTAAT
CTAAGCATTACAAACGATAGCCTTTGATCCAATAAGCATAATTATGGTAT
AACATCAGGGGTGATCAAAGCAAGTTTTtgctaagcaaccccagccctga
cccgaaaattggagttgcttataaaaatattttgtacgCGCTGCTCAGAT
GTGCAAGGTGCCGGTTGATTTCTTGATGACCATTTTTGTAGCCACGAGTT
CACGTTTCAGGGGCGATGGaaaaatttgagagtttttgtgGAGAGATTTT
TCGTTTAAATTAACTCATCAAATACCATCAATCACTCtgtaacttcaaat
tttcaaatatatttctcCAACTAAGAAAGAATTATTACTCTCAACTTATT
TTTCATTCGGGTTTAAAAGCAGGTCGATAAGgacctacacgcttttttta
taagaatggtgttttttcatttcatcatgggtATTTTTAACTTTGTGCGG
TGAATAATTGTGGCGAAgaaggtttttattttattttaatataaAGTAAA
TAAGTAATTCGTATCTATTGACTCGCCATTGGTTTGGAGTGGCCTTCTTC
ATAAGAACTATGCAAAGAGAGAAGGTTACAACCCACGACGGAGACGTATT
CACAAACGGAagtcgttttttttttggaaatccaaTGTCGAATGTGTATT
ATACTAAAAGATACTAGGATTTTaatggattttttttgtttatctttgat
AATACGTACCTGCCGAGTGGCTTGTTATGATCCAGACTATTTTACATTTT
AGCAGCAAGCTGTAATTAGTAATTATTGTTGGAGCATCGtcttgaaacgt
tacgtaatctgTTTccacatccccttctcacagacccactaggacCCCTT
GCCCCTTacaactggaaaaattggccaaaatatagtccccggtggaaaat
tatcttccgagttttgtccccactgaaaataatcaaataaactaatCCTC
ACTGAAAATGTTTTACTATTTCTTCCCATccacactgaattttctgaatt
gaaaacaatatatggtaatatcaatccccatcgaattTCAGATCGTTATT
ATTACCGCCTGGCTGAAAATATCCTATCGGGTCTGTGAGAGGGGTGTGTT
TTCATTACGattctacacttttttttaataagaaccattaattttttgtt
gaggctcagctgttcttattttttggcactttgagcctcaaattgttctt
atcctgttcttatttataaggTAAAATTGAAGTATTTTAGGATTTGTACG
CATATTTTACTACTATGACCCTTagtttgcttgaaattgagtaatttcag
gctcagcattgctcttaaattatttttattttggcgatttcgAGCCTcat
cgttcttataaaattgttcttataaaagaaaacaagtGTATTCATCTTCA
AATTGTGAAGAGTTGAGAGGAGATACAcgctatttttataagaatacacg
ggctttataagaatgtccatgatgaaaatggccaaaaaattaagaatatc
gtaagaatTTCATGGAATTAGGCAACTGAAGCTAAAAGAATGTTATTTTT
AGAGTCTTATTGCTAGGCAATGCTAAGAAGTTTCACAAAAATCCCAAATT
CTTGCTCGAGATGCTATAGATTTGGGCTatgttttcaatttaatttaaga
atactgtaagaatatttcaggataatttcaaccaaaaagttaagaatatc
catgatgaaatggatttaaccattcttataaaaaaaagcgtgtaaaaggC
AGAAATTTGGTGTAAACGTGGAGGAGGGTGTCTTCTTtgataaaataaga
aatcaaacaGAAAGCATTAAGGCCCCATTACACCTAAGAATATAAAGGAA
GAATAATGTGAAACTTACTGCACACCTGACACTTGTGAGTAATTTTATTA
AGGCCCCATTACACCTAAGAATATAAAGGAAGAATAATGTGAAATTTACT
GCACACCTGACACTTGTGAgcaattttattaaattctccTGTGTAATCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaacta
acgaacacgggttaatttataggacctccaccccaccggggtaggtccaa
aaatcaaacAGAAAGCATTAGAAAAGGAGATGTTTGagcttttctttgaa
atttcattgttttttcttcgttttaATTTTGTGAAGTTGAGATGGGATGC
GTCTCATCCATGTCTATCTTGCGTAATTAGTGAAAGTAGAATAATTTTTG
TTGCTGTctagtaaatttttttgaagactttttaAACCTTATGTAAAGga
ttatcttttctttttatatttagTGAGTGGAAATCGGGAAATGATCACCG
TTTTTGCTTTTCAAATTAACCAATTGTTCTTGTTCTTGATTTTATAGAAT
TAATAATGATAAAGCGGAATGTGAAAGTGATACAATCAAGCGTCCGATTG
GATAAACGAGCTGGTTCTTATAATCCTAAGCAAAAAAGTACGTAATCCTA
AAGAGTTTAAAGAAGCAAGAAGAGAGACACTTGGTTCGAAAATCATCTAC
TTTACTCCTGAGAGAAACTAGAGATGGATATACAGCGCCGTGAGAGTAGC
AATATAACCTGGAAATGGCAAAAGATCACTTCAACGTTGCTTTTGATATG
GATGGTGCTCGCCACTCTGGCTGGTGGATTTTACGTCAACGATGTCAACT
CTTACGAAGAAGACGAAAGagagagatttaaaaaaaattcaatgtatAAT
TTGAAGAGGGAGTTGTTATTCCCAGCGTGGACAAGTCTAACATTGATTTT
CAATGTCCTGTTAGGTTACATTGGTGTCTTAACCAGGAAGAGATCATACA
TTAGCATTAAATTAGCACTTGATATTTTGAATATCGTGTTCAGGGCGGCA
ATGATTTTCCTTATGGCTGTATTTTGTGCAGCATATGGGGAATGTGTAGT
GCAGAGGGGACCAAGTGGTGTTTATAATGCGTGCTGCGAAGATGAGCCTT
TCCGCATACCGTGCTACACAGTCACGATTGATCGTATCAGGTTAGAGTTT
GGTTTGCTTATAGTGATATTGGTGATGGAAATCTTATCTTTGGTGACACT
CTTTGTGTCTTGTATTCTTTATTGCACCAAATGTAATGAGAATTGTGCTG
CAAGACATATGGAAAGCAATAGGGTGAGGTATGAAATAGGACAAGAGAAT
GTTTTGCTCCAAGCTAatgataccttaagggaagaaattttcgcgagaag
aaattttcgcggaagaaattttcgcggaatttaatttcgcgaattggggc
gaaacacaccaaaattgttaaatcgcgaaattaaattccgcgaaattcga
ttttttttcttcttcttttattttgttgtttttgaccaggtgttaccaaa
aaatatggacacaattaatttttaag Coding sequence (CDS) from alignment at scaffold_253:518850..524675+ >TCONS_00055348 ID=TCONS_00055348|Name=TCONS_00055348|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_253:518850..524675+ (Clytia hemisphaerica)
ATGTCAACNGAGAGAATGGATATGCAGCGCCGTGAGAGTAGCAATATAAC
TTGGAAATGGCAAAAGATCACTACAACGTTGCTTTTGATATGGATGGTGC
TTGCCACGGTGGCTGGTGGATTTTACGTCAACGATGTCAACTCTTACGAA
GGAATTgagagatttcaaaaaatctcaatGTATAATTTGAAGAAGTTGTT
TTTATTCCCGGCGTGGACAAGTCTAACATTGATTTTCAATGTCCTGTTAG
GTTACATTGGTGTCTTAACCAGGAAGAGATCATACATTAGAATTAAATTA
GCACTcgatattttaaacattttgttcaGAGCAGCAATGATTTATTTGTT
GGGAAAGCTTTATGTACCAGCATATGGTAAATGTGCTTTGAAGCGACCAA
GAGGTGTTTCATACAATTCGTGCTGCGAAGATGAGCCTTTCCGCATACCG
TGCTACACGGACACGATACATCGCATCCGGTTAGAGTTTGGTTTGCTTAT
AGTGATATTGGTGATGGAAATCTTATCTTTGGTGACACTCTTTGTGTCTT
GTATTCTTTATTGCACCAAATGTAATGAGAATTGTGCTGCAAGACATATG
GAAAGCAATAGGGTGAGGTATGAAATAGGACAAGAGAATGTTTTGCTCCA
AGCTAatgataccttaagggaagaaattttcgcgagaagaaattttcgcg
gaagaaattttcgcggaatttaaATGTCAACNGAGAGAATGGATATGCAG
CGCCGTGAGAGTAGCAATATAACTTGGAAATGGCAAAAGATCACTACAAC
GTTGCTTTTGATATGGATGGTGCTTGCCACGGTGGCTGGTGGATTTTACG
TCAACGATGTCAACTCTTACGAAGGAATTgagagatttcaaaaaatctca
atGTATAATTTGAAGAAGTTGTTTTTATTCCCGGCGTGGACAAGTCTAAC
ATTGATTTTCAATGTCCTGTTAGGTTACATTGGTGTCTTAACCAGGAAGA
GATCATACATTAGAATTAAATTAGCACTcgatattttaaacattttgttc
aGAGCAGCAATGATTTATTTGTTGGGAAAGCTTTATGTACCAGCATATGG
TAAATGTGCTTTGAAGCGACCAAGAGGTGTTTCATACAATTCGTGCTGCG
AAGATGAGCCTTTCCGCATACCGTGCTACACGGACACGATACATCGCATC
CGGTTAGAGTTTGGTTTGCTTATAGTGATATTGGTGATGGAAATCTTATC
TTTGGTGACACTCTTTGTGTCTTGTATTCTTTATTGCACCAAATGTAATG
AGAATTGTGCTGCAAGACATATGGAAAGCAATAGGGTGAGGTATGAAATA
GGACAAGAGAATGTTTTGCTCCAAGCTAatgataccttaagggaagaaat
tttcgcgagaagaaattttcgcggaagaaattttcgcggaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055348-exon-scaffold_253-1491911889:518850..519676 | TCONS_00055348-exon-scaffold_253-1491911889:518850..519676 | Clytia hemisphaerica | exon |
| TCONS_00055348-exon-scaffold_253-1510915933:518850..519676 | TCONS_00055348-exon-scaffold_253-1510915933:518850..519676 | Clytia hemisphaerica | exon |
| TCONS_00055348-exon-scaffold_253-1575043694:518850..519676 | TCONS_00055348-exon-scaffold_253-1575043694:518850..519676 | Clytia hemisphaerica | exon |
| TCONS_00055348-exon-scaffold_253-1491911889:524290..524675 | TCONS_00055348-exon-scaffold_253-1491911889:524290..524675 | Clytia hemisphaerica | exon |
| TCONS_00055348-exon-scaffold_253-1510915933:524290..524675 | TCONS_00055348-exon-scaffold_253-1510915933:524290..524675 | Clytia hemisphaerica | exon |
| TCONS_00055348-exon-scaffold_253-1575043694:524290..524675 | TCONS_00055348-exon-scaffold_253-1575043694:524290..524675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:518850..524675 + |
Blast
The following BLAST results are available for this feature:
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