TCONS_00055397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055397
Unique NameTCONS_00055397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055397 ID=TCONS_00055397|Name=TCONS_00055397|organism=Clytia hemisphaerica|type=transcript|length=3022bp
tatcaACAGTTGATGCACTTGGATCTTCTGATCCATTCAATATGATGGTG
AAAGATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGA
GCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAG
GGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGAC
GACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTC
ACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCC
CCTATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCT
CCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGA
TGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAA
ACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTGTT
CGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAA
GGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTT
TAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCAT
GCCAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTC
ACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCAC
CATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCC
AGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTG
GAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCT
CACATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCA
GAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTC
TTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATA
TTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACG
AAGAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGC
GCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGA
AATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaa
caacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGC
CAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAAC
AAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCG
ACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCAC
GTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACA
TTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTT
GTACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAA
CCTTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTA
TTGGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCT
GTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGT
TCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGT
TCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACT
GGGCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAAT
GACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCA
TGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCC
ATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCC
AGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCG
TGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGA
CAGCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGC
ACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGC
AGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACAC
CAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACA
ACTTCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCTG
GACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAAC
TTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATT
CACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTT
CTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACT
AAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCA
CATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTG
TTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCA
CTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCA
TACATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaG
GTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTT
CTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTAC
TTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAg
gatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682249..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055397 ID=TCONS_00055397|Name=TCONS_00055397|organism=Clytia hemisphaerica|type=transcript|length=12080bp|location=Sequence derived from alignment at scaffold_253:682249..694328+ (Clytia hemisphaerica)
tatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTATTTACTACAGTA
TGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATTCTCTTTTTCCC
TAATAATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGG
TGAAAGATAtgccagattttgaaaaacctNTGTGCTGTATAACGACATTA
TAATTTCCTTAAAGCTTTTTTGTATGAAACTTTGACTCTTCGCTCCACGA
AAGCTTTAACCTTCAAAATTGAAGTAATTTACTCAAAAAAGAATCCTATT
TCTAGAAAATACAGTTTATTTtgtaatatatataatatagtGGTAGTATA
CGATAGCAATAATATTGTGATAATTGTAATGATTTCTATTATAtaagttt
ttatttatgatatttAGTAATCCCAACTTTAGTTTAATATTATCTtatga
tttttcagaaatacatttttcaaaatttttttttgtaacctAAAGTTGAT
TCTTCAGCTAGTTTCTTTGTCAATAAAAGTCGTAAACTAACCGTCTTGTA
TTTCATCTTAGAATCTGATAGAATACAATAATGacaatataaaataaaca
aataaaaatgttatcaACAGTTGATGCACTTGGATCTTCTGTAAGTCTAT
TTACTACAGTATGATAAAACTTAGAAAGTTTCTGATTTTAATCATTAATT
CTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAATTTAGGATCCATT
CAATATGATGGTGAAAGATAtgccagattttgaaaaacctgCCTTGAAGT
GAGTATAataacataaaaaaatattttgattgtgTTATTAACTATGCTAC
AAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTGAAACCTCTGttag
aaagaaaaaatcagtcccatttattgactttttaaaatttttatacaaat
ttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGA
GATGGTtgggaaaaagatttttgatgggaattcattttggcaatttttgg
tcaaaaatctTCATTAGATATTCTCATTAAAATCACATTATTCATATAGG
AAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCA
ACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTC
CATAGTATATGGGTTGATATCAAAATATCCCATCATGTTTTATTCCACCA
TGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTTATAAGAATGAAAG
TGCACTTTTTccaatctttttgaaatatgataaacAATAGATATTACATT
GAACAACTACTGAAATTCAGTATGAAATAATATTGAaacacttttatttt
tccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAG
GAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGG
ATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATA
AACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGG
GTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCT
AAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGAAAT
TACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATT
GAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCATGTC
AATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAAT
TCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTT
TTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAACGAA
GTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATT
TTAGATGATCgtgctattcatgatattataccaccctaaATATTTTCCCA
AACAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttttCT
TGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAAT
AAGCTCTAGtctagacggccgactttctgtcctgcctattctaattgtta
gtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgcttgga
aaagattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgcattg
actttagacagcccactttattaagcccactttaattcacaattagaata
ggcagggcgaaaagtgggccgtctaaactagagctaacaTCCACCTGTTT
GttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTGAAA
TCCTATCAccaaatttttgcttttcaACTGCCTTCAGAACTCtcattttt
tcattgtttattactttttgataaaattttatacTACAGAAAATTAAATA
TATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTT
GATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTGATTACAGAAG
AAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTAAAACCAACCT
CACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAA
CAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttat
tttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTA
TGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTT
TGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGG
AGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCA
ACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACA
AAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAA
ACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAAT
GACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATG
AACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTA
TCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTAC
TTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAA
GCTGTTAGATTTCATCAAACAAAACAAANgaaaaatataaaaatacttcT
GGTTTTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTT
ACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAGTTTATAAGAATGA
AAGTGCACTTTTTccaatctttttgaaatatgataaacAATAGATATTAC
ATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAaacacttttat
ttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTC
AAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGA
TGGATATTCACTGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGT
ATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACATAGTCTTTAA
GGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTAGTGAGGTTTT
GCTAAATATGAGAGGATACTTAGATCCATGTGACATTATTTTGCTAATGA
AATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTATTATTGTTTAC
ATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTGAAATCATCAT
GTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAGTG
AATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGAT
GTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAACATACTTAAC
GAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAA
ATTTTAGATGATCgtgctattcatgatattataccaccctaaATATTTTC
CCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaaaacccacttt
tCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTCGCTTTTAAAG
AATAAGCTCTAGtctagacggccgactttctgtcctgcctattctaattg
ttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaaatctttgctt
ggaaaagattgaaagaagtcattgcgttgacgtcaaaaaagggcaatgca
ttgactttagacagcccactttattaagcccactttaattcacaattaga
ataggcagggcgaaaagtgggccgtctaaactagagctaacaTCCACCTG
TTTGttattcttttgaaaagaattagAAATTAGAAATGTTAAAGAGACTG
AAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTCAGAACTCtcattt
tttcattgtttattactttttgataaGATTTTATACTACAGAAAATTAAA
TATATTCCTATGTAACGATCGATGTTAAGAAATTCTTTGTTTTCCATGAA
TAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGGAGTTACGTGATTA
CAGACGAAGTACTCAGAAAAACTTTGATACCACTTACATTTTATTAAAAC
CAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACT
CCTTTTAATACACATTTGTTCTCTTACTTGGttgtagattttattttcat
tgaagCATTTTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTA
GTGTAAACTACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGA
CCATTGTTCGTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAAC
GAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAG
ACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATAC
AACACCATGCCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCA
ATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAA
CCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTA
ATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAA
GCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAAC
CGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTT
AGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATA
AATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTC
AACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACAT
TCTAACTTCACTATACCATACACCtcctcacagacccactgggactcctt
cccactggaaaaattggcctaaATATCGTCcctagtggaaaattatacac
tTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACT
TATATCATGCTATTTTCTatcctcactgaattttctgacttaaaaacaat
ggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACga
atttcagtccgttatttttacccccactggctgaaaaaatcccaccccct
tctcacacacccgagaagggggtgtatcatttAATACCGATTCTTCATAT
CTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCATGAACTAACAGTGA
CTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCA
ATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATTAAACA
TGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCCAGTAT
TATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACAGCCCT
ACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCATGTTTG
AAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGTAATTC
TTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAAACAAA
GACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATTCTTTT
TTATACATTCTAACTTCACTATACCATACACCtcctcacagacccactgg
gactccttcccactggaaaaattggcctaaATATCGTCcctagtggaaaa
ttatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACTAATCC
CCACTACTTATATCATGCTATTTTCTatcctcactgaattttctgactta
aaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATATCGATC
CCCAACgaatttcagtccgttatttttacccccactggctgaaaaaatcc
caccgggtgtgtgagaagggggtgtatcatttAATACCGATTCTTCATAT
CTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGTGAACTAACAATGA
CTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGT
CGAAAGGAATAAGTTAtttgatatttcaattttagtttaaaCCACGACTC
TCATTTTACAAACTCTTTTAGGTAACCTCACATGCAAAACTGATGGAACT
ACCGAAATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTT
TGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATC
CAAAGACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGA
AGACCATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCA
GGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTGGACGGTGTTTAGA
AAACACCCATGAGGACAGATAGTCTAGAATATGTCAACTCAAATGCTGTC
TTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTATTTGACCTGACAG
ATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCA
ATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCATTtggtttttatc
attttattttacattcTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCAC
AGCGCAACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTC
GGAAATCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaat
caacaacaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACA
AGCCAAAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTAC
AACAAGCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTT
CCGACATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCG
CACGTTCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACAT
ACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAAT
GTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGTTTTACTTAATATC
TTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgattttctctattttt
cgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAATCTTATACAACATA
ACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTACATAACTCAAACG
CCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAA
TACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATTGAAATAATGTGCG
AGTTATGAAGAGATGCTTTAACATTCAATTTAATTATTCAATCTTCTAGG
GAATCCTTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAA
CCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAAT
GCACAGCTAACAACAGCTTACATCCAAGTAACTTCTCATAAATTGATTCT
TCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTAATTTTGAGCACCA
TCTAGATTACTTCTGATTGACACGACCATTCTCAAACCGCTCAACTCGTA
ATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGATAAAT
ATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACA
TGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTT
TGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATA
CGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACATgatcaaat
cttttttgttggaataataatattttgcaaaaagtATCAAGTTATTGACT
CTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTTATTTGGCATTTCT
TTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTG
TATGTCATCCAATACcttacttatttttcaaagtattgtaattttaaagc
ttaaaagtatttgttgtttttgtaaacTTTCCAGGTACCAGGCAATCTTG
TACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAA
ATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCAT
GGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACC
AAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAA
GGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAAC
TGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCT
TTTTATTCAGATAAAtcgtaatttgaaatttgaaaactcTGTGATAAAAT
GGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTA
CCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCATTTCAATATCCAA
CCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAAC
ATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGCACTGCAAGGTCAA
CCTGTATTCATCCAAGGTCAACCGAANGACCATTCTAAAACCGCTCAACT
CGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCATACAACGAT
AAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAGGAGGAACTT
CACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATGTC
AGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAAAC
AATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACatcatc
aaatcttttttgttggaataacaatattttgcaaaatgtaTCAAGTTATT
GACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGATTTTATTTGGCAT
TTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAA
ATTGTATGTCATCCAATACcttacttatttttcaaagtattgtaatttta
aagcttaaagctatttgttgtttttgtaaacTTTTCCAGGTACCAGGCAA
TCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAAAGG
GACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAA
GTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCATACC
TAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCA
TTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAAGGA
CAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTG
CTCCTTTTTATTCAGATAAatcgtaatttttgaaatttgaaaactcTGTG
ATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAAGCATAA
GCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCG
TAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCA
AACTGGTCAGAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTG
TATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGTAAGCTATTCAACA
TTTAAATAACAGTTGACAGTTTCAAATGATTAATATGGTGAAAATATTAG
TAGCTATTTAGTACTCTACTTTTTAATGTATTTTATAAATattatttgct
ttttctcataagGTACACCATAATATACACTGGTAGCGTTTTTCCAATTT
ATTACCAACGAATTTCTTTTACTGTACACTTGTATGATAAAAAAGGCGTC
GAGTAAGATATATACTTCGGTAATGTCAAGACGAAGCTTCATTGCATATT
GTTTGTGATTGTAGTTCATGACGAAATTATAGCCATTGTCGGAGTTCAAT
CACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCA
AGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAG
TTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAACTTCAAATC
GTCCCTCAAATACAAAAACAAGGTATAACTCGCCCATTTTCATCTTTCTA
TAATAATAGTACCGGAGCTTtttgtatttgtatttttttgtaatgaaact
ttatcaaatgcaaacttaaaatttacttttaagATTTACAATATTAGACC
CTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGTAAAAGACCTTACA
AAAACACTTATTATTCTTGATATTATTCTTATTTCAGCAGTAATTACAAG
TTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCAC
AAGTTAACTTGATCCCTATGCAACAGAGTGGACAACAATATCAACCCATC
GTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAA
AAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTG
CACCTACTAAACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTT
CCATTTCACATCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATC
TAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCA
AAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaa
gtgCGGCATACATAGTCATAATAATGATTTCAttgtgaaaacattttttc
tgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCA
AATCTCTTCTGCTATAAACTACTTATTATTATGGACTGTATATACTTTTT
TTAACTACTTTTGACACAAAATTGACAACACATTTAAATGTTTCTTTAAT
AATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055397-exon-scaffold_253-1491911889:682249..682277TCONS_00055397-exon-scaffold_253-1491911889:682249..682277Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:682249..682277TCONS_00055397-exon-scaffold_253-1510915933:682249..682277Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:682249..682277TCONS_00055397-exon-scaffold_253-1575043694:682249..682277Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:682991..683046TCONS_00055397-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:682991..683046TCONS_00055397-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:682991..683046TCONS_00055397-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:683348..683414TCONS_00055397-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:683348..683414TCONS_00055397-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:683348..683414TCONS_00055397-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:685860..686015TCONS_00055397-exon-scaffold_253-1491911889:685860..686015Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:685860..686015TCONS_00055397-exon-scaffold_253-1510915933:685860..686015Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:685860..686015TCONS_00055397-exon-scaffold_253-1575043694:685860..686015Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:686292..686366TCONS_00055397-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:686292..686366TCONS_00055397-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:686292..686366TCONS_00055397-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:687052..687159TCONS_00055397-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:687052..687159TCONS_00055397-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:687052..687159TCONS_00055397-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:687348..687538TCONS_00055397-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:687348..687538TCONS_00055397-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:687348..687538TCONS_00055397-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:688523..688733TCONS_00055397-exon-scaffold_253-1491911889:688523..688733Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:688523..688733TCONS_00055397-exon-scaffold_253-1510915933:688523..688733Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:688523..688733TCONS_00055397-exon-scaffold_253-1575043694:688523..688733Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:689270..689499TCONS_00055397-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:689270..689499TCONS_00055397-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:689270..689499TCONS_00055397-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:689775..690220TCONS_00055397-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:689775..690220TCONS_00055397-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:689775..690220TCONS_00055397-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:690548..690675TCONS_00055397-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:690548..690675TCONS_00055397-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:690548..690675TCONS_00055397-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:691968..692138TCONS_00055397-exon-scaffold_253-1491911889:691968..692138Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:691968..692138TCONS_00055397-exon-scaffold_253-1510915933:691968..692138Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:691968..692138TCONS_00055397-exon-scaffold_253-1575043694:691968..692138Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:692388..692676TCONS_00055397-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:692388..692676TCONS_00055397-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:692388..692676TCONS_00055397-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:692889..692983TCONS_00055397-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:692889..692983TCONS_00055397-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:692889..692983TCONS_00055397-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:693341..693470TCONS_00055397-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:693341..693470TCONS_00055397-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:693341..693470TCONS_00055397-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1491911889:693689..694328TCONS_00055397-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1510915933:693689..694328TCONS_00055397-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055397-exon-scaffold_253-1575043694:693689..694328TCONS_00055397-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682249..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.17825	0.025923	0.0208437	0.0422267	5.76532e-05	1.45553e-10	3.12529e-05	7.49594e-07	0.0378884	0.0491431	4.37878e-05	8.01167e-07	0.0225895	1.67732e-06	4.13836e-06	7.69451e-05	0	0	6.17438e-10	0	0.000498899	0.334221	7.91e-10	1.73348e-07	1.7215e-08	1.6158e-07
Blast
[Close]
BLAST of TCONS_00055397 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 1.298e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 3 
Query:   84 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1214
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.298e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
back to top