TCONS_00055407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055407
Unique NameTCONS_00055407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055407 ID=TCONS_00055407|Name=TCONS_00055407|organism=Clytia hemisphaerica|type=transcript|length=2999bp
TCTGATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaacc
tgCCTTGAAGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGGAGG
AGAAGAAGCAACAACAAGAAAAAGGGGATTTCAACAAGGAGTCCATGCTT
CTTCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCT
GTATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAA
GTGATGTGGAGACGTATAAACTCCCCTATGAGGAAAGTGAATTCTTAGAT
TACTTGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAG
TGCTCAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTACGTG
ATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACATTTTATTA
AAACCAACCTCACAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGA
CCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTT
TAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTAC
ACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTT
ACGAAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATT
TATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatc
aaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAG
AGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTG
TGCCATCGAAAATAGACGTAACCTCACATGCAAAACTGATGGAACTACCG
AAATACACAACAGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGA
AGGCGAAAAGACCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAA
GACGTGGCTCAACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGAC
CATGGGAAAACGAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTT
TTCTCTGGTCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAG
AACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTC
GCAAACCAAGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAA
CAGTAACAACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaac
aacagaCTGCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAA
AAGATCATTGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCA
TACCATCGTCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCA
TTTCACATGGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAA
TCACTTAACTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGGAATCC
TTACATAGTAAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAA
CCAACCAATCGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAG
CTAACAACAGCTTACATCCAATCTGTATCGGGTGCAACGATAGGAGGAAC
TTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGAAACAATG
TCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATCTCCACAA
ACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGGTACCAGG
CAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACCACAAA
AGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGTCCACGGGAAG
CAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACCTTCAT
ACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGACAGCCA
TCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAACACAA
GGACAAACTGTCATGATACAGGGACAGCCAGGACAACATCAAACTGGTCA
GAATACTTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCC
AAGGTCAACCGAATGGCCAAACGCAGGTTGTTCAAGGTCAAGCAATCATG
TTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAAC
TTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAAA
AACAAGCAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCT
CTCTCTGCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGG
ACAACAATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCC
CTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGT
GGGCGGAAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTA
AAACACCCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTT
TAATTCCGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTT
TGATATATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTA
cgaagttttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTC
AttgtgaaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAA
TCTCTTTTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTA
TGGACTGTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACAC
ATTTAAATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682886..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055407 ID=TCONS_00055407|Name=TCONS_00055407|organism=Clytia hemisphaerica|type=transcript|length=11443bp|location=Sequence derived from alignment at scaffold_253:682886..694328+ (Clytia hemisphaerica)
TCTGTAAGTCTATTTACTACAGTATGATAAAACTTAGAAAGTTTCTGATT
TTAATCATTAATTCTCTTTTTCCCTAATAATAACAATTACGGGTTTTCAA
TTTAGGATCCATTCAATATGATGGTGAAAGATAtgccagattttgaaaaa
cctgCCTTGAAGTGAGTATAataacataaaaaaatattttgattgtgTTA
TTAACTATGCTACAAATACAAGGTGTTGTGAATTTATTTGCTGTATTTTG
AAACCTCTGttagaaagaaaaaatcagtcccatttattgactttttaaaa
tttttatacaaatttgatTTAGTGGAGTGCTGAATAAGTTTTTTGAGAGA
AATAAATTTGGGAGATGGTtgggaaaaagatttttgatgggaattcattt
tggcaatttttggtcaaaaatctTCATTAGATATTCTCATTAAAATCACA
TTATTCATATAGGAAATCACTATTTGAGCGACTTCTCAATGCTTATGTGG
AGGAGAAGAAGCAACAACAAGAAAAAGGGGTAAACTAGCAATTAAAATAA
GCTTTTTTTTCTCCATAGTATATGGGTTGATATCAAAATATCCCATCATG
TTTTATTCCACCATGGTATGTGATATAGTGTTATAAGCTTATTAAAGTTT
ATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaacAA
TAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATTGAa
acacttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCTTCA
AAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGTATC
CTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGTGAT
GTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATTACA
TAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAATTTA
GTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATTATT
TTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCATTAT
TATTGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTTTTG
AAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTA
TAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCCTCT
CCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAACAA
CATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGCAGA
ATCCTCTCAAATTTTAGATGATCgtgctattcatgatattataccaccct
aaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagctgaa
aacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCACCTC
GCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctgcct
attctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagttaaa
atctttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaaaaa
gggcaatgcattgactttagacagcccactttattaagcccactttaatt
cacaattagaataggcagggcgaaaagtgggccgtctaaactagagctaa
caTCCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAATGTT
AAAGAGACTGAAATCCTATCAccaaatttttgcttttcaACTGCCTTCAG
AACTCtcattttttcattgtttattactttttgataaaattttatacTAC
AGAAAATTAAATATATCCCTATGTAACGATGTTAAGAAATTCTTTGTTTT
CCATGAATAGGTTGATCTATTCTATGATGGCTGTGTCATTGTGGAGTTAC
GTGATTACAGAAGAAGTACTCAGAAAAACTTTGATACCACCTACATTTTA
TTAAAACCAACCTCACAGGTAAGCAGTATTTTGTTTAAAGTTGTATTTAT
TTCTCTTCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGG
ttgtagattttattttcattgaagCATTTTCCAACTGATTTTGGTCATAA
GAGTACTGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTC
TCTCTGAAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTC
AGACCCGAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAG
TTTTAGCTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTT
TACACTGCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGG
TTTACGAAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTT
TCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTAC
CTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATA
TTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATT
TTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGC
CACCATGTTTGAAGCTGTTAGATTTCATCAAACAAAACAAANgaaaaata
taaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTTTC
CTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTANTTAAAG
TTTATAAGAATGAAAGTGCACTTTTTccaatctttttgaaatatgataaa
cAATAGATATTACATTGAACAACTACTGAAATTCAGTATGAAATAATATT
GAaacacttttatttttccttaaGGATTTCAACAAGGAGTCCATGCTTCT
TCAAAAGATAGTCAAGGAAGACGACCTTGGTGTTCTGATTGTCAATCTGT
ATCCTGGTAGTGATGGATATTCACTGatgttgaaaaagaaagatgGAAGT
GATGTGGAGACGTATAAACTCCCCTATGAGGTAATTTGTATTAGGTAATT
ACATAGTCTTTAAGGGGTAGAACATTATGACATATCTGTAAAATCCTAAT
TTAGTGAGGTTTTGCTAAATATGAGAGGATACTTAGATCCATGTGACATT
ATTTTGCTAATGAAATTACTTGAAACTGAAGAGGATAAAGCCTGAGTCAT
TATTATTGTTTACATTGAAATgagtgaaaaatataaaaatacttcTGGTT
TTGAAATCATCATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCT
TTATAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCC
TCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTTGTAGGTCCATCACAA
CAACATACTTAACGAAGTTGGAATCGTACATAATGTCAGCTTTGTCAAGC
AGAATCCTCTCAAATTTTAGATGATCgtgctattcatgatattataccac
cctaaATATTTTCCCAAACAAAGGGTATTGGTTTTCAAATattagaagct
gaaaacccacttttCTTGGTATTTTGTACCTTCCCTACAATTTCATGCAC
CTCGCTTTTAAAGAATAAGCTCTAGtctagacggccgactttctgtcctg
cctattctaattgttagtgTAGGCAGAAAGCGTAcacaaagttggcagtt
aaaatctttgcttggaaaagattgaaagaagtcattgcgttgacgtcaaa
aaagggcaatgcattgactttagacagcccactttattaagcccacttta
attcacaattagaataggcagggcgaaaagtgggccgtctaaactagagc
taacaTCCACCTGTTTGttattcttttgaaaagaattagAAATTAGAAAT
GTTAAAGAGACTGAAATCCTATCACCAAATTTTGCTTTTCAACTGCCTTC
AGAACTCtcattttttcattgtttattactttttgataaGATTTTATACT
ACAGAAAATTAAATATATTCCTATGTAACGATCGATGTTAAGAAATTCTT
TGTTTTCCATGAATAGGTTGATCTATTCTATGATGGTTGTGTCATTGTGG
AGTTACGTGATTACAGACGAAGTACTCAGAAAAACTTTGATACCACTTAC
ATTTTATTAAAACCAACCTCACAGGTAAGCAGTGTTGTGTTTATTTCTCT
TCAGGAACAAACTCCTTTTAATACACATTTGTTCTCTTACTTGGttgtag
attttattttcattgaagCATTTTCCAACTGATTTTGGTCATAAGAGTAC
TGTACTATGTTTAGTGTAAACTACCTATATCTAATATATTTGTCTCTCTG
AAATCTTTGTAGACCATTGTTCGTGATGTAAACTCATTGATGTCAGACCC
GAAATGGAGTAACGAAGACAAGGCCAAACTAGAATCTCAATTAGTTTTAG
CTATGCAACCAAGACTGTGTTTAGATCCTTCACCAAAGGTTCTTTACACT
GCCAACAAAATACAACACCATGCCAATAAATGGAATCATAAAGGTTTACG
AAGGTAAACACCAATGGATTCAGTGTTAGTTCAGTTCAAGACTTTCTGAT
AGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTTACCTGATT
AAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCATATTATCC
AGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGATTTTCACA
GCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCAT
GTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAGT
AATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGAA
ACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTTAGTTATT
CTTTTTTATACATTCTAACTTCACTATACCATACACCtcctcacagaccc
actgggactccttcccactggaaaaattggcctaaATATCGTCcctagtg
gaaaattatacactTAATTTGTATCCCAACTAAAAATAATCCAATGAACT
AATCCCCACTACTTATATCATGCTATTTTCTatcctcactgaattttctg
acttaaaaacaatggaatttaaatccaCAGTCATAAAAGTATAGGAATAT
CGATCCCCAACgaatttcagtccgttatttttacccccactggctgaaaa
aatcccacccccttctcacacacccgagaagggggtgtatcatttAATAC
CGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCAT
GAACTAACAGTGACTCCTTGCANGGATTCAGTGTTAGTTCAGTTCAAGAC
TTTCTGATAGGCAATGACAAACCCAATGTCACTACCAATAAATAAATCTT
ACCTGATTAAACATGAACCTAATCAATGTTTTAACACTATTCAGCTAGCA
TATTATCCAGTATTATCCAAAGCCCATTCTATTTTAGGTCAATGAAAAGA
TTTTCACAGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTC
GCCACCATGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaac
GTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGAC
ATGTGGAAACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGT
TAGTTATTCTTTTTTATACATTCTAACTTCACTATACCATACACCtcctc
acagacccactgggactccttcccactggaaaaattggcctaaATATCGT
CcctagtggaaaattatacactTAATTTGTATCCCAACTAAAAATAATCC
AATGAACTAATCCCCACTACTTATATCATGCTATTTTCTatcctcactga
attttctgacttaaaaacaatggaatttaaatccaCAGTCATAAAAGTAT
AGGAATATCGATCCCCAACgaatttcagtccgttatttttacccccactg
gctgaaaaaatcccaccgggtgtgtgagaagggggtgtatcatttAATAC
CGATTCTTCATATCTCACGGCTTAAAGAGCTCAAAGTATGAACTAATCGT
GAACTAACAATGACTCCTTGCAAACAGTATTTGTCTATCATCGTTAAAAG
TTTCGATGGTGGTCGAAAGGAATAAGTTAtttgatatttcaattttagtt
taaaCCACGACTCTCATTTTACAAACTCTTTTAGGTAACCTCACATGCAA
AACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGAGAAAATC
CAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTTATTATTG
TCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATTGGCGATC
TCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAAGAAAGAT
GGGCGTGCATGCAGGTTTGTCTTTTTTGTTAATTACCTTAGAGAGACTTG
GACGGTGTTTAGAAAACACCCATGAGGACAGATAGTCTAGAATATGTCAA
CTCAAATGCTGTCTTGACTTCAAAAGTTATGGAAACCTTTAGGATCGTTA
TTTGACCTGACAGATTTGTTTTATTTGTAGAATTTTTCCTGGTACCTTAG
GTTATGGAGTTCAATTCTATAGTTAGATCTATTTATCAAGCTTTGTATCA
TTtggtttttatcattttattttacattcTTTTCGAAAGGTTTTCTCTGG
TCAACCGAATCACAGCGCAACGCTATTTACAACAGTTTCAAGAACTCTAC
ACAGAAGAAGGTCGGAAATCAgtcaaaatttcaacctttgTCGCAAACCA
AGCACAAcgaaatcaacaacaacaacagcaacaagcACAAAACAGTAACA
ACGCCTCACAACAAGCCAAAACACAAgcacaacaacagcaacaacagaCT
GCTCAGATCTTACAACAAGCTGCACACCAGGCTGCGACACAAAAGATCAT
TGTTTCGTCAGTTCCGACATCCACGACACAAATGACAACCCATACCATCG
TCAATCAGAATCGCACGTTCACTGTGGCTCAGAACCCAGTCATTTCACAT
GGTGGAAATACATACATTCTTGCAAGCTCGGCACTTCAACAATCACTTAA
CTTGGGATCCAATGTTGTACCAATGTCGTTATCAAGTTCGTTTTTTGAGT
TTTACTTAATATCTTTCTTGTGTCTCTACTAAGATTTTCTCATCTAAgat
tttctctatttttcgCTTCTAGAATAGTTCCTCTGTTCCACATCCAAAAT
CTTATACAACATAACCAGTAAACTCTCTTTTTTCTCTCTACATGAGTTTA
CATAACTCAAACGCCAAGTAAGGACAACCCAGTAACTCTTCGAGTTGCAG
AGTAAAAAATCAATACCTTAAGGGGTCAGAAAGAATGTTTCGACTACATT
GAAATAATGTGCGAGTTATGAAGAGATGCTTTAACATTCAATTTAATTAT
TCAATCTTCTAGGGAATCCTTACATAGTAAATTCATCAGGAAACCTTCAA
CAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATTGGAGC
GTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAAGTAACTTCTC
ATAAATTGATTCTTCCTTTTTTAATTCCAATTATCACCCAAGGGTGTTTA
ATTTTGAGCACCATCTAGATTACTTCTGATTGACACGACCATTCTCAAAC
CGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATTTTCA
TACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACGATAG
GAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACAAGGA
AACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAGCATC
TCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTGCAGG
TACATgatcaaatcttttttgttggaataataatattttgcaaaaagtAT
CAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGCTCCAACTAATTTT
ATTTGGCATTTCTTTAATAGTGTGAATTGAGCTCTGGTTCTGGTTTTCCT
GGATATTAAATTGTATGTCATCCAATACcttacttatttttcaaagtatt
gtaattttaaagcttaaaagtatttgttgtttttgtaaacTTTCCAGGTA
CCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGTGGACC
ACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCGGTTATGGTCCACG
GGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAGCTACC
TTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGTCAGAC
AGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGGACAAA
CACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCTTGACC
TTTCTGTGCTCCTTTTTATTCAGATAAAtcgtaatttgaaatttgaaaac
tcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTATTTGATAA
GCATAAGCAGTTACCATCTCTTCCTCGGCATATTTTTTTCTCGTTGTTCA
TTTCAATATCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTT
GACTTAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAGGC
ACTGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAANGACCATTCTA
AAACCGCTCAACTCGTAATACAAATGCTTGTTCAGTTAGCACTAATCATT
TTCATACAACGATAAATATTGTTTTGCTTCAGTCTGTATCGGGTGCAACG
ATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTCCTATCGCAGTACA
AGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTCATAGCAGCCAAAG
CATCTCCACAAACAATACGTCCAGCAGGTGCCACTGGGCAAATCATGCTG
CAGGTACatcatcaaatcttttttgttggaataacaatattttgcaaaat
gtaTCAAGTTATTGACTCTAGTTGGTCTAAGTTGTCTTTGTTCCAACTGA
TTTTATTTGGCATTTCTTTAATACTGTGAATTGGGCTCTGGTTCTGGTTT
TCCTGGATATTAAATTGTATGTCATCCAATACcttacttatttttcaaag
tattgtaattttaaagcttaaagctatttgttgtttttgtaaacTTTTCC
AGGTACCAGGCAATCTTGTACCACTCTCTCAAATGACCAGAGTAGCTGGT
GGACCACAAAAGGGACAAATTCCTGGTGCTGGCATGGCTTCAGTTATGGT
CCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCATGATACAGGGCCAAG
CTACCTTCATACCTAACCAAGCACCATTGATCCCAGGTCTTCAAGGTGGT
CAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTGCAAGGTCAACCAGG
ACAAACACAAGGACAAACTGTCATGATACAGGGACAGCCAGGTAACTTCT
TGACCTTTCTGTGCTCCTTTTTATTCAGATAAatcgtaatttttgaaatt
tgaaaactcTGTGATAAAATGGGATTTCTAGCATTACTTATTGAAATTAT
TTGATAAGCATAAGCAGTTACCAACTCTTCCTCGGCATATTTTTTTCTCG
TTGTTCCAACCCGTAGTAACTCGTTTCGAGCTGTATAATTTTGTTTGACT
TAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCACTG
CAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAGGT
AAGCTATTCAACATTTAAATAACAGTTGACAGTTTCAAATGATTAATATG
GTGAAAATATTAGTAGCTATTTAGTACTCTACTTTTTAATGTATTTTATA
AATattatttgctttttctcataagGTACACCATAATATACACTGGTAGC
GTTTTTCCAATTTATTACCAACGAATTTCTTTTACTGTACACTTGTATGA
TAAAAAAGGCGTCGAGTAAGATATATACTTCGGTAATGTCAAGACGAAGC
TTCATTGCATATTGTTTGTGATTGTAGTTCATGACGAAATTATAGCCATT
GTCGGAGTTCAATCACTATTCAAAGTATTTTTCACCCTTTCTTCTTCCTC
TACAGGTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGA
CACCAGGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCA
ACAACTTCAAATCGTCCCTCAAATACAAAAACAAGGTATAACTCGCCCAT
TTTCATCTTTCTATAATAATAGTACCGGAGCTTtttgtatttgtattttt
ttgtaatgaaactttatcaaatgcaaacttaaaatttacttttaagATTT
ACAATATTAGACCCTGTTAGATTTTTTGCCCACGTCTGAAAGATCGTTGT
AAAAGACCTTACAAAAACACTTATTATTCTTGATATTATTCTTATTTCAG
CAGTAATTACAAGTTCAGCTGGACGCACGCAATCATCTACCGCTCTCTCT
GCTTTAACATCACAAGTTAACTTGATCCCTATGCAACAGAGTGGACAACA
ATATCAACCCATCGTTCAATTCACTACTTCCGCCCAACCCCGCCCTGTTC
AACAGAGGCGTAAAAGTGCTTCTCAACCCAACGCAGCGGGTGGTGGGCGG
AAGCGTGCCCCTGCACCTACTAAACCTTCTCCCCAATCACAGTAAAACAC
CCCAAACCTTTTTCCATTTCACATCTGTATGATTCTCTTACCTTTAATTC
CGCCTAATTGATCTAGAAGTGTTCTGTTCTGAATGAACTACTTTTGATAT
ATCATCAATGGCAAAATGTCACTTTACTAGTCTTCTTGGATTTAcgaagt
tttcaatttttaagtgCGGCATACATAGTCATAATAATGATTTCAttgtg
aaaacattttttctgttgcaGGTGTTGTATAGTTTAAGTTACAATCTCTT
TTGTATATCACCAAATCTCTTCTGCTATAAACTACTTATTATTATGGACT
GTATATACTTTTTTTAACTACTTTTGACACAAAATTGACAACACATTTAA
ATGTTTCTTTAATAATCTTAggatattcaaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055407-exon-scaffold_253-1491911889:682886..682888TCONS_00055407-exon-scaffold_253-1491911889:682886..682888Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:682886..682888TCONS_00055407-exon-scaffold_253-1510915933:682886..682888Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:682886..682888TCONS_00055407-exon-scaffold_253-1575043694:682886..682888Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:682991..683046TCONS_00055407-exon-scaffold_253-1491911889:682991..683046Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:682991..683046TCONS_00055407-exon-scaffold_253-1510915933:682991..683046Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:682991..683046TCONS_00055407-exon-scaffold_253-1575043694:682991..683046Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:683348..683414TCONS_00055407-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:683348..683414TCONS_00055407-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:683348..683414TCONS_00055407-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:683657..683812TCONS_00055407-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:683657..683812TCONS_00055407-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:683657..683812TCONS_00055407-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:684089..684163TCONS_00055407-exon-scaffold_253-1491911889:684089..684163Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:684089..684163TCONS_00055407-exon-scaffold_253-1510915933:684089..684163Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:684089..684163TCONS_00055407-exon-scaffold_253-1575043694:684089..684163Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:684846..684953TCONS_00055407-exon-scaffold_253-1491911889:684846..684953Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:684846..684953TCONS_00055407-exon-scaffold_253-1510915933:684846..684953Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:684846..684953TCONS_00055407-exon-scaffold_253-1575043694:684846..684953Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:685154..685344TCONS_00055407-exon-scaffold_253-1491911889:685154..685344Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:685154..685344TCONS_00055407-exon-scaffold_253-1510915933:685154..685344Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:685154..685344TCONS_00055407-exon-scaffold_253-1575043694:685154..685344Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:687715..687925TCONS_00055407-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:687715..687925TCONS_00055407-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:687715..687925TCONS_00055407-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:689270..689499TCONS_00055407-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:689270..689499TCONS_00055407-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:689270..689499TCONS_00055407-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:689775..690220TCONS_00055407-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:689775..690220TCONS_00055407-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:689775..690220TCONS_00055407-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:690548..690675TCONS_00055407-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:690548..690675TCONS_00055407-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:690548..690675TCONS_00055407-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:691968..692138TCONS_00055407-exon-scaffold_253-1491911889:691968..692138Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:691968..692138TCONS_00055407-exon-scaffold_253-1510915933:691968..692138Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:691968..692138TCONS_00055407-exon-scaffold_253-1575043694:691968..692138Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:692388..692676TCONS_00055407-exon-scaffold_253-1491911889:692388..692676Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:692388..692676TCONS_00055407-exon-scaffold_253-1510915933:692388..692676Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:692388..692676TCONS_00055407-exon-scaffold_253-1575043694:692388..692676Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:692889..692983TCONS_00055407-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:692889..692983TCONS_00055407-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:692889..692983TCONS_00055407-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:693341..693470TCONS_00055407-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:693341..693470TCONS_00055407-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:693341..693470TCONS_00055407-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1491911889:693686..694328TCONS_00055407-exon-scaffold_253-1491911889:693686..694328Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1510915933:693686..694328TCONS_00055407-exon-scaffold_253-1510915933:693686..694328Clytia hemisphaericaexon
TCONS_00055407-exon-scaffold_253-1575043694:693686..694328TCONS_00055407-exon-scaffold_253-1575043694:693686..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682886..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.81482e-10	2.42409e-07	2.566e-06	1.40139e-09	0	2.01038e-05	8.11338e-09	2.97327e-10	0.00201079	1.73106e-08	0	3.16761e-10	0	0	0	0	1.86629e-08	0	4.29407e-06	2.40948e-09	5.23016e-08	1.87225e-08	3.7611e-05	0	5.14508e-07	0
Blast
[Close]
BLAST of TCONS_00055407 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 1.469e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 1 
Query:   58 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1188
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.469e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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