TCONS_00055408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055408
Unique NameTCONS_00055408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055408 ID=TCONS_00055408|Name=TCONS_00055408|organism=Clytia hemisphaerica|type=transcript|length=3020bp
AATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGGTGAA
AGATAtgccagattttgaaaaacctgCCTTGAAGAAATCACTATTTGAGC
GACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGGG
GATTTCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGA
CCTTGGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCAC
TGatgttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCC
TATGAGGAAAGTGAATTCTTAGATTACTTGGATACACAAGAACTACCTCC
TCTCCTTGTGGATGTTTTGGAGAGTGCTCAGGTTGATCTATTCTATGATG
GTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCAGAAAAAC
TTTGATACCACTTACATTTTATTAAAACCAACCTCACAGACCATTGTTCG
TGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGG
CCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTA
GATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGC
CAATAAATGGAATCATAAAGGTTTACGAAGGTCAATGAAAAGATTTTCAC
AGCCCTACTTGAACCGTGCATATTTATGTTCTCACACACCTTCGCCACCA
TGTTTGAAGCTGTTAGATTTcatcaaacaaaacaaagataaacGTTCCAG
TAATTCTTTCCATAAATTGAGTAGAGCCACCCAACATACTGACATGTGGA
AACAAAGACAACTCAACCTATCTGTGCCATCGAAAATAGACGTAACCTCA
CATGCAAAACTGATGGAACTACCGAAATACACAACAGATTATACGCCAGA
GAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGACCAACAACCGTTCTT
ATTATTGTCGTGTTACCATCCAAAGACGTGGCTCAACAGGCGAATATATT
GGCGATCTCTACCTAGAGGAAGACCATGGGAAAACGAAGGAAGATACGAA
GAAAGATGGGCGTGCATGCAGGTTTTCTCTGGTCAACCGAATCACAGCGC
AACGCTATTTACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAA
TCAgtcaaaatttcaacctttgTCGCAAACCAAGCACAAcgaaatcaaca
acaacaacagcaacaagcACAAAACAGTAACAACGCCTCACAACAAGCCA
AAACACAAgcacaacaacagcaacaacagaCTGCTCAGATCTTACAACAA
GCTGCACACCAGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGAC
ATCCACGACACAAATGACAACCCATACCATCGTCAATCAGAATCGCACGT
TCACTGTGGCTCAGAACCCAGTCATTTCACATGGTGGAAATACATACATT
CTTGCAAGCTCGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGT
ACCAATGTCGTTATCAAGGAATCCTTACATAGTAAATTCATCAGGAAACC
TTCAACAAGCTGTATCAACCAAAACCAACCAATCGCCAAGCAAAATTATT
GGAGCGTCTAATGAAAATGCACAGCTAACAACAGCTTACATCCAATCTGT
ATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGCAGTTC
CTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATCAGTTC
ATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCCACTGG
GCAAATCATGCTGCAGGTACCAGGCAATCTTGTACCACTCTCTCAAATGA
CCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGCATG
GCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGCCAT
GATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCCCAG
GTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTCGTG
CAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGGACA
GCCAGGACAACATCAAACTGGTCAGAATACTTTGATCCAAGGACAAGCAC
TGCAAGGTCAACCTGTATTCATCCAAGGTCAACCGAATGGCCAAACGCAG
GTTGTTCAAGGTCAAGCAATCATGTTGCAGGGCAATCAAGGTGGACACCA
GGGCCAAGTTCAATTGATCACAACTTCAACATCAAGCGGCGGCCAACAAC
TTCAAATCGTCCCTCAAATACAAAAACAAGTAATTACAAGTTCAGCTGGA
CGCACGCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTT
GATCCCTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCA
CTACTTCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCT
CAACCCAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAA
ACCTTCTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACA
TCTGTATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTT
CTGTTCTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACT
TTACTAGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATA
CATAGTCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGT
GTTGTATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCT
GCTATAAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTT
TTGACACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAgga
tattcaaaaatttttagaac
Run BLAST on NCBI

transcript from alignment at scaffold_253:682964..694328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055408 ID=TCONS_00055408|Name=TCONS_00055408|organism=Clytia hemisphaerica|type=transcript|length=11365bp|location=Sequence derived from alignment at scaffold_253:682964..694328+ (Clytia hemisphaerica)
AATAACAATTACGGGTTTTCAATTTAGGATCCATTCAATATGATGGTGAA
AGATAtgccagattttgaaaaacctgCCTTGAAGTGAGTATAataacata
aaaaaatattttgattgtgTTATTAACTATGCTACAAATACAAGGTGTTG
TGAATTTATTTGCTGTATTTTGAAACCTCTGttagaaagaaaaaatcagt
cccatttattgactttttaaaatttttatacaaatttgatTTAGTGGAGT
GCTGAATAAGTTTTTTGAGAGAAATAAATTTGGGAGATGGTtgggaaaaa
gatttttgatgggaattcattttggcaatttttggtcaaaaatctTCATT
AGATATTCTCATTAAAATCACATTATTCATATAGGAAATCACTATTTGAG
CGACTTCTCAATGCTTATGTGGAGGAGAAGAAGCAACAACAAGAAAAAGG
GGTAAACTAGCAATTAAAATAAGCTTTTTTTTCTCCATAGTATATGGGTT
GATATCAAAATATCCCATCATGTTTTATTCCACCATGGTATGTGATATAG
TGTTATAAGCTTATTAAAGTTTATAAGAATGAAAGTGCACTTTTTccaat
ctttttgaaatatgataaacAATAGATATTACATTGAACAACTACTGAAA
TTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGATTTCA
ACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTTGGT
GTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGatgtt
gaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATGAGG
TAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTATGAC
ATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGGATA
CTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTGAAG
AGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaaaaa
tataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTTGTT
TCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACTTGG
ATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCTCAG
GTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTACAT
AATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgtgct
attcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTATTGG
TTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTACCT
TCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtctaga
cggccgactttctgtcctgcctattctaattgttagtgTAGGCAGAAAGC
GTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaagaag
tcattgcgttgacgtcaaaaaagggcaatgcattgactttagacagccca
ctttattaagcccactttaattcacaattagaataggcagggcgaaaagt
gggccgtctaaactagagctaacaTCCACCTGTTTGttattcttttgaaa
agaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCAccaaatt
tttgcttttcaACTGCCTTCAGAACTCtcattttttcattgtttattact
ttttgataaaattttatacTACAGAAAATTAAATATATCCCTATGTAACG
ATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTCTATGAT
GGCTGTGTCATTGTGGAGTTACGTGATTACAGAAGAAGTACTCAGAAAAA
CTTTGATACCACCTACATTTTATTAAAACCAACCTCACAGGTAAGCAGTA
TTTTGTTTAAAGTTGTATTTATTTCTCTTCAGGAACAAACTCCTTTTAAT
ACACATTTGTTCTCTTACTTGGttgtagattttattttcattgaagCATT
TTCCAACTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACT
ACCTATATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTC
GTGATGTAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAG
GCCAAACTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTT
AGATCCTTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATG
CCAATAAATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCA
GTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTC
ACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTT
TTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCT
ATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATAT
TTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTCAT
CAAACAAAACAAANgaaaaatataaaaatacttcTGGTTTTGAAATCATC
ATGTCAATCATTGATTTGTTTCCTGATTATTATTTACCTTTATAGGAAAG
TGAATTCTTAGATTANTTAAAGTTTATAAGAATGAAAGTGCACTTTTTcc
aatctttttgaaatatgataaacAATAGATATTACATTGAACAACTACTG
AAATTCAGTATGAAATAATATTGAaacacttttatttttccttaaGGATT
TCAACAAGGAGTCCATGCTTCTTCAAAAGATAGTCAAGGAAGACGACCTT
GGTGTTCTGATTGTCAATCTGTATCCTGGTAGTGATGGATATTCACTGat
gttgaaaaagaaagatgGAAGTGATGTGGAGACGTATAAACTCCCCTATG
AGGTAATTTGTATTAGGTAATTACATAGTCTTTAAGGGGTAGAACATTAT
GACATATCTGTAAAATCCTAATTTAGTGAGGTTTTGCTAAATATGAGAGG
ATACTTAGATCCATGTGACATTATTTTGCTAATGAAATTACTTGAAACTG
AAGAGGATAAAGCCTGAGTCATTATTATTGTTTACATTGAAATgagtgaa
aaatataaaaatacttcTGGTTTTGAAATCATCATGTCAATCATTGATTT
GTTTCCTGATTATTATTTACCTTTATAGGAAAGTGAATTCTTAGATTACT
TGGATACACAAGAACTACCTCCTCTCCTTGTGGATGTTTTGGAGAGTGCT
CAGGTTTGTAGGTCCATCACAACAACATACTTAACGAAGTTGGAATCGTA
CATAATGTCAGCTTTGTCAAGCAGAATCCTCTCAAATTTTAGATGATCgt
gctattcatgatattataccaccctaaATATTTTCCCAAACAAAGGGTAT
TGGTTTTCAAATattagaagctgaaaacccacttttCTTGGTATTTTGTA
CCTTCCCTACAATTTCATGCACCTCGCTTTTAAAGAATAAGCTCTAGtct
agacggccgactttctgtcctgcctattctaattgttagtgTAGGCAGAA
AGCGTAcacaaagttggcagttaaaatctttgcttggaaaagattgaaag
aagtcattgcgttgacgtcaaaaaagggcaatgcattgactttagacagc
ccactttattaagcccactttaattcacaattagaataggcagggcgaaa
agtgggccgtctaaactagagctaacaTCCACCTGTTTGttattcttttg
aaaagaattagAAATTAGAAATGTTAAAGAGACTGAAATCCTATCACCAA
ATTTTGCTTTTCAACTGCCTTCAGAACTCtcattttttcattgtttatta
ctttttgataaGATTTTATACTACAGAAAATTAAATATATTCCTATGTAA
CGATCGATGTTAAGAAATTCTTTGTTTTCCATGAATAGGTTGATCTATTC
TATGATGGTTGTGTCATTGTGGAGTTACGTGATTACAGACGAAGTACTCA
GAAAAACTTTGATACCACTTACATTTTATTAAAACCAACCTCACAGGTAA
GCAGTGTTGTGTTTATTTCTCTTCAGGAACAAACTCCTTTTAATACACAT
TTGTTCTCTTACTTGGttgtagattttattttcattgaagCATTTTCCAA
CTGATTTTGGTCATAAGAGTACTGTACTATGTTTAGTGTAAACTACCTAT
ATCTAATATATTTGTCTCTCTGAAATCTTTGTAGACCATTGTTCGTGATG
TAAACTCATTGATGTCAGACCCGAAATGGAGTAACGAAGACAAGGCCAAA
CTAGAATCTCAATTAGTTTTAGCTATGCAACCAAGACTGTGTTTAGATCC
TTCACCAAAGGTTCTTTACACTGCCAACAAAATACAACACCATGCCAATA
AATGGAATCATAAAGGTTTACGAAGGTAAACACCAATGGATTCAGTGTTA
GTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATGTCACTACC
AATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATGTTTTAACA
CTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATTCTATTTTA
GGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCATATTTATGT
TCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTcatcaaaca
aaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAGTAGAGCCA
CCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTATCTGTGCCA
TCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACTTCACTATA
CCATACACCtcctcacagacccactgggactccttcccactggaaaaatt
ggcctaaATATCGTCcctagtggaaaattatacactTAATTTGTATCCCA
ACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCATGCTATTT
TCTatcctcactgaattttctgacttaaaaacaatggaatttaaatccaC
AGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcagtccgttat
ttttacccccactggctgaaaaaatcccacccccttctcacacacccgag
aagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAGA
GCTCAAAGTATGAACTAATCATGAACTAACAGTGACTCCTTGCANGGATT
CAGTGTTAGTTCAGTTCAAGACTTTCTGATAGGCAATGACAAACCCAATG
TCACTACCAATAAATAAATCTTACCTGATTAAACATGAACCTAATCAATG
TTTTAACACTATTCAGCTAGCATATTATCCAGTATTATCCAAAGCCCATT
CTATTTTAGGTCAATGAAAAGATTTTCACAGCCCTACTTGAACCGTGCAT
ATTTATGTTCTCACACACCTTCGCCACCATGTTTGAAGCTGTTAGATTTc
atcaaacaaaacaaagataaacGTTCCAGTAATTCTTTCCATAAATTGAG
TAGAGCCACCCAACATACTGACATGTGGAAACAAAGACAACTCAACCTAT
CTGTGCCATCGAAAATAGACGTTAGTTATTCTTTTTTATACATTCTAACT
TCACTATACCATACACCtcctcacagacccactgggactccttcccactg
gaaaaattggcctaaATATCGTCcctagtggaaaattatacactTAATTT
GTATCCCAACTAAAAATAATCCAATGAACTAATCCCCACTACTTATATCA
TGCTATTTTCTatcctcactgaattttctgacttaaaaacaatggaattt
aaatccaCAGTCATAAAAGTATAGGAATATCGATCCCCAACgaatttcag
tccgttatttttacccccactggctgaaaaaatcccaccgggtgtgtgag
aagggggtgtatcatttAATACCGATTCTTCATATCTCACGGCTTAAAGA
GCTCAAAGTATGAACTAATCGTGAACTAACAATGACTCCTTGCAAACAGT
ATTTGTCTATCATCGTTAAAAGTTTCGATGGTGGTCGAAAGGAATAAGTT
AtttgatatttcaattttagtttaaaCCACGACTCTCATTTTACAAACTC
TTTTAGGTAACCTCACATGCAAAACTGATGGAACTACCGAAATACACAAC
AGATTATACGCCAGAGAAAATCCAAGAAATTATTTTGGAAGGCGAAAAGA
CCAACAACCGTTCTTATTATTGTCGTGTTACCATCCAAAGACGTGGCTCA
ACAGGCGAATATATTGGCGATCTCTACCTAGAGGAAGACCATGGGAAAAC
GAAGGAAGATACGAAGAAAGATGGGCGTGCATGCAGGTTTGTCTTTTTTG
TTAATTACCTTAGAGAGACTTGGACGGTGTTTAGAAAACACCCATGAGGA
CAGATAGTCTAGAATATGTCAACTCAAATGCTGTCTTGACTTCAAAAGTT
ATGGAAACCTTTAGGATCGTTATTTGACCTGACAGATTTGTTTTATTTGT
AGAATTTTTCCTGGTACCTTAGGTTATGGAGTTCAATTCTATAGTTAGAT
CTATTTATCAAGCTTTGTATCATTtggtttttatcattttattttacatt
cTTTTCGAAAGGTTTTCTCTGGTCAACCGAATCACAGCGCAACGCTATTT
ACAACAGTTTCAAGAACTCTACACAGAAGAAGGTCGGAAATCAgtcaaaa
tttcaacctttgTCGCAAACCAAGCACAAcgaaatcaacaacaacaacag
caacaagcACAAAACAGTAACAACGCCTCACAACAAGCCAAAACACAAgc
acaacaacagcaacaacagaCTGCTCAGATCTTACAACAAGCTGCACACC
AGGCTGCGACACAAAAGATCATTGTTTCGTCAGTTCCGACATCCACGACA
CAAATGACAACCCATACCATCGTCAATCAGAATCGCACGTTCACTGTGGC
TCAGAACCCAGTCATTTCACATGGTGGAAATACATACATTCTTGCAAGCT
CGGCACTTCAACAATCACTTAACTTGGGATCCAATGTTGTACCAATGTCG
TTATCAAGTTCGTTTTTTGAGTTTTACTTAATATCTTTCTTGTGTCTCTA
CTAAGATTTTCTCATCTAAgattttctctatttttcgCTTCTAGAATAGT
TCCTCTGTTCCACATCCAAAATCTTATACAACATAACCAGTAAACTCTCT
TTTTTCTCTCTACATGAGTTTACATAACTCAAACGCCAAGTAAGGACAAC
CCAGTAACTCTTCGAGTTGCAGAGTAAAAAATCAATACCTTAAGGGGTCA
GAAAGAATGTTTCGACTACATTGAAATAATGTGCGAGTTATGAAGAGATG
CTTTAACATTCAATTTAATTATTCAATCTTCTAGGGAATCCTTACATAGT
AAATTCATCAGGAAACCTTCAACAAGCTGTATCAACCAAAACCAACCAAT
CGCCAAGCAAAATTATTGGAGCGTCTAATGAAAATGCACAGCTAACAACA
GCTTACATCCAAGTAACTTCTCATAAATTGATTCTTCCTTTTTTAATTCC
AATTATCACCCAAGGGTGTTTAATTTTGAGCACCATCTAGATTACTTCTG
ATTGACACGACCATTCTCAAACCGCTCAACTCGTAATACAAATGCTTGTT
CAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCTTCAG
TCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAACGGC
AGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGTAATC
AGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGGTGCC
ACTGGGCAAATCATGCTGCAGGTACATgatcaaatcttttttgttggaat
aataatattttgcaaaaagtATCAAGTTATTGACTCTAGTTGGTCTAAGT
TGTCTTTGCTCCAACTAATTTTATTTGGCATTTCTTTAATAGTGTGAATT
GAGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCAATAC
cttacttatttttcaaagtattgtaattttaaagcttaaaagtatttgtt
gtttttgtaaacTTTCCAGGTACCAGGCAATCTTGTACCACTCTCTCAAA
TGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTGCTGGC
ATGGCTTCGGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGAGGCGC
CATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATTGATCC
CAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCATCTTC
GTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATACAGGG
ACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAGATAAA
tcgtaatttgaaatttgaaaactcTGTGATAAAATGGGATTTCTAGCATT
ACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCATCTCTTCCTCGG
CATATTTTTTTCTCGTTGTTCATTTCAATATCCAACCCGTAGTAACTCGT
TTCGAGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGA
ATACTTTGATCCAAGGACAGGCACTGCAAGGTCAACCTGTATTCATCCAA
GGTCAACCGAANGACCATTCTAAAACCGCTCAACTCGTAATACAAATGCT
TGTTCAGTTAGCACTAATCATTTTCATACAACGATAAATATTGTTTTGCT
TCAGTCTGTATCGGGTGCAACGATAGGAGGAACTTCACATGGTCAACTAA
CGGCAGTTCCTATCGCAGTACAAGGAAACAATGTCAGTTTGGTCCCTGGT
AATCAGTTCATAGCAGCCAAAGCATCTCCACAAACAATACGTCCAGCAGG
TGCCACTGGGCAAATCATGCTGCAGGTACatcatcaaatcttttttgttg
gaataacaatattttgcaaaatgtaTCAAGTTATTGACTCTAGTTGGTCT
AAGTTGTCTTTGTTCCAACTGATTTTATTTGGCATTTCTTTAATACTGTG
AATTGGGCTCTGGTTCTGGTTTTCCTGGATATTAAATTGTATGTCATCCA
ATACcttacttatttttcaaagtattgtaattttaaagcttaaagctatt
tgttgtttttgtaaacTTTTCCAGGTACCAGGCAATCTTGTACCACTCTC
TCAAATGACCAGAGTAGCTGGTGGACCACAAAAGGGACAAATTCCTGGTG
CTGGCATGGCTTCAGTTATGGTCCACGGGAAGCAAGTCATGGTTCAGGGA
GGCGCCATGATACAGGGCCAAGCTACCTTCATACCTAACCAAGCACCATT
GATCCCAGGTCTTCAAGGTGGTCAGACAGCCATCATTCAAGGTGGTTCCA
TCTTCGTGCAAGGTCAACCAGGACAAACACAAGGACAAACTGTCATGATA
CAGGGACAGCCAGGTAACTTCTTGACCTTTCTGTGCTCCTTTTTATTCAG
ATAAatcgtaatttttgaaatttgaaaactcTGTGATAAAATGGGATTTC
TAGCATTACTTATTGAAATTATTTGATAAGCATAAGCAGTTACCAACTCT
TCCTCGGCATATTTTTTTCTCGTTGTTCCAACCCGTAGTAACTCGTTTCG
AGCTGTATAATTTTGTTTGACTTAGGACAACATCAAACTGGTCAGAATAC
TTTGATCCAAGGACAAGCACTGCAAGGTCAACCTGTATTCATCCAAGGTC
AACCGAATGGCCAAACGCAGGTAAGCTATTCAACATTTAAATAACAGTTG
ACAGTTTCAAATGATTAATATGGTGAAAATATTAGTAGCTATTTAGTACT
CTACTTTTTAATGTATTTTATAAATattatttgctttttctcataagGTA
CACCATAATATACACTGGTAGCGTTTTTCCAATTTATTACCAACGAATTT
CTTTTACTGTACACTTGTATGATAAAAAAGGCGTCGAGTAAGATATATAC
TTCGGTAATGTCAAGACGAAGCTTCATTGCATATTGTTTGTGATTGTAGT
TCATGACGAAATTATAGCCATTGTCGGAGTTCAATCACTATTCAAAGTAT
TTTTCACCCTTTCTTCTTCCTCTACAGGTTGTTCAAGGTCAAGCAATCAT
GTTGCAGGGCAATCAAGGTGGACACCAGGGCCAAGTTCAATTGATCACAA
CTTCAACATCAAGCGGCGGCCAACAACTTCAAATCGTCCCTCAAATACAA
AAACAAGGTATAACTCGCCCATTTTCATCTTTCTATAATAATAGTACCGG
AGCTTtttgtatttgtatttttttgtaatgaaactttatcaaatgcaaac
ttaaaatttacttttaagATTTACAATATTAGACCCTGTTAGATTTTTTG
CCCACGTCTGAAAGATCGTTGTAAAAGACCTTACAAAAACACTTATTATT
CTTGATATTATTCTTATTTCAGCAGTAATTACAAGTTCAGCTGGACGCAC
GCAATCATCTACCGCTCTCTCTGCTTTAACATCACAAGTTAACTTGATCC
CTATGCAACAGAGTGGACAACAATATCAACCCATCGTTCAATTCACTACT
TCCGCCCAACCCCGCCCTGTTCAACAGAGGCGTAAAAGTGCTTCTCAACC
CAACGCAGCGGGTGGTGGGCGGAAGCGTGCCCCTGCACCTACTAAACCTT
CTCCCCAATCACAGTAAAACACCCCAAACCTTTTTCCATTTCACATCTGT
ATGATTCTCTTACCTTTAATTCCGCCTAATTGATCTAGAAGTGTTCTGTT
CTGAATGAACTACTTTTGATATATCATCAATGGCAAAATGTCACTTTACT
AGTCTTCTTGGATTTAcgaagttttcaatttttaagtgCGGCATACATAG
TCATAATAATGATTTCAttgtgaaaacattttttctgttgcaGGTGTTGT
ATAGTTTAAGTTACAATCTCTTTTGTATATCACCAAATCTCTTCTGCTAT
AAACTACTTATTATTATGGACTGTATATACTTTTTTTAACTACTTTTGAC
ACAAAATTGACAACACATTTAAATGTTTCTTTAATAATCTTAggatattc
aaaaatttttagaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034875XLOC_034875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055408-exon-scaffold_253-1491911889:682964..683046TCONS_00055408-exon-scaffold_253-1491911889:682964..683046Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:682964..683046TCONS_00055408-exon-scaffold_253-1510915933:682964..683046Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:682964..683046TCONS_00055408-exon-scaffold_253-1575043694:682964..683046Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:683348..683414TCONS_00055408-exon-scaffold_253-1491911889:683348..683414Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:683348..683414TCONS_00055408-exon-scaffold_253-1510915933:683348..683414Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:683348..683414TCONS_00055408-exon-scaffold_253-1575043694:683348..683414Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:683657..683812TCONS_00055408-exon-scaffold_253-1491911889:683657..683812Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:683657..683812TCONS_00055408-exon-scaffold_253-1510915933:683657..683812Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:683657..683812TCONS_00055408-exon-scaffold_253-1575043694:683657..683812Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:686292..686366TCONS_00055408-exon-scaffold_253-1491911889:686292..686366Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:686292..686366TCONS_00055408-exon-scaffold_253-1510915933:686292..686366Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:686292..686366TCONS_00055408-exon-scaffold_253-1575043694:686292..686366Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:687052..687159TCONS_00055408-exon-scaffold_253-1491911889:687052..687159Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:687052..687159TCONS_00055408-exon-scaffold_253-1510915933:687052..687159Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:687052..687159TCONS_00055408-exon-scaffold_253-1575043694:687052..687159Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:687348..687538TCONS_00055408-exon-scaffold_253-1491911889:687348..687538Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:687348..687538TCONS_00055408-exon-scaffold_253-1510915933:687348..687538Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:687348..687538TCONS_00055408-exon-scaffold_253-1575043694:687348..687538Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:687715..687925TCONS_00055408-exon-scaffold_253-1491911889:687715..687925Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:687715..687925TCONS_00055408-exon-scaffold_253-1510915933:687715..687925Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:687715..687925TCONS_00055408-exon-scaffold_253-1575043694:687715..687925Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:689270..689499TCONS_00055408-exon-scaffold_253-1491911889:689270..689499Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:689270..689499TCONS_00055408-exon-scaffold_253-1510915933:689270..689499Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:689270..689499TCONS_00055408-exon-scaffold_253-1575043694:689270..689499Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:689775..690220TCONS_00055408-exon-scaffold_253-1491911889:689775..690220Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:689775..690220TCONS_00055408-exon-scaffold_253-1510915933:689775..690220Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:689775..690220TCONS_00055408-exon-scaffold_253-1575043694:689775..690220Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:690548..690675TCONS_00055408-exon-scaffold_253-1491911889:690548..690675Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:690548..690675TCONS_00055408-exon-scaffold_253-1510915933:690548..690675Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:690548..690675TCONS_00055408-exon-scaffold_253-1575043694:690548..690675Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:690864..691038TCONS_00055408-exon-scaffold_253-1491911889:690864..691038Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:690864..691038TCONS_00055408-exon-scaffold_253-1510915933:690864..691038Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:690864..691038TCONS_00055408-exon-scaffold_253-1575043694:690864..691038Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:691287..691571TCONS_00055408-exon-scaffold_253-1491911889:691287..691571Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:691287..691571TCONS_00055408-exon-scaffold_253-1510915933:691287..691571Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:691287..691571TCONS_00055408-exon-scaffold_253-1575043694:691287..691571Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:692889..692983TCONS_00055408-exon-scaffold_253-1491911889:692889..692983Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:692889..692983TCONS_00055408-exon-scaffold_253-1510915933:692889..692983Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:692889..692983TCONS_00055408-exon-scaffold_253-1575043694:692889..692983Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:693341..693470TCONS_00055408-exon-scaffold_253-1491911889:693341..693470Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:693341..693470TCONS_00055408-exon-scaffold_253-1510915933:693341..693470Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:693341..693470TCONS_00055408-exon-scaffold_253-1575043694:693341..693470Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1491911889:693689..694328TCONS_00055408-exon-scaffold_253-1491911889:693689..694328Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1510915933:693689..694328TCONS_00055408-exon-scaffold_253-1510915933:693689..694328Clytia hemisphaericaexon
TCONS_00055408-exon-scaffold_253-1575043694:693689..694328TCONS_00055408-exon-scaffold_253-1575043694:693689..694328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:682964..694328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.64085e-05	4.48914e-05	0.000269806	6.54638e-07	0	0	0	0	0.000238512	0	0	0.338029	0	0	0	0.319484	0	0	0.33567	0	1.32936e-05	0.153645	0	0.362464	0.281978	0.256325
Blast
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BLAST of TCONS_00055408 vs. Swiss-Prot (Human)
Match: SP20H (Transcription factor SPT20 homolog OS=Homo sapiens GN=SUPT20H PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 1.546e-80
Identity = 155/393 (39.44%), Postives = 244/393 (62.09%), Query Frame = 1 
Query:   82 KKSLFERLLNAYVEEKKQQQEKGDFNKESMLLQKIVKEDDLGVLIVNLYPGSDGYSLMLKKKDGSDVETYKLPYEESEFLDYLDTQELPPLLVDVLESAQVDLFYDGCVIVELRDYRRST---QKNFDTTYILLKPTSQTIVRDVNSLMSD-PKWSNEDKAKLESQLVLAMQPRLCLDPSPKVLYTANKIQHHANKWNHKGLRRSMKRFSQPYLNRAYLCSHTPSPPCLKLLDFIKQNKDKRSSNSFH-KLSRATQHTDMWKQRQLNLSVPSKIDVTSHAKLMELPKYTTDYTP------EKIQEIILEGEKTNNRSYYCRVTIQRRGSTGEYIGDLYL-----EEDHGKTKEDTKKDGRACRFSLVNRITAQRYLQQFQELYTEEGRKSVKI 1212
            +KS+F++L + Y+EE +++ E     +   LL+K+V ++ L  L+VNLYPG++GYSLML+ K+GSD ET +LPYEE E L+YLD +ELPP+LVD+LE +QV++F+ GCVI E+RDYR+S+      + + +ILL+PT QT++ DV+S+ SD  KW+ EDK  LESQL+LA    LCLDPS  V  TAN++ ++  K N + ++R  KR+S+  LNR    SH P PP L+LLDF+++ K++++   +  K+S+A    DMWK+   NL++PS++DV  +AK+ +  K + D  P      +   + + E E    +    ++TI +      Y G +       E D   +   +  D  +  F + ++  A+R + Q+QEL   E +  VK+
Sbjct:   33 RKSVFQKLYDLYIEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAIPSEVDVEKYAKVEKSIK-SDDSQPTVWPAHDVKDDYVFECE-AGTQYQKTKLTILQSLGDPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCPVKM 423
The following BLAST results are available for this feature:
BLAST of TCONS_00055408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SP20H1.546e-8039.44Transcription factor SPT20 homolog OS=Homo sapiens... [more]
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