TCONS_00055417 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055417
Unique NameTCONS_00055417
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055417 ID=TCONS_00055417|Name=TCONS_00055417|organism=Clytia hemisphaerica|type=transcript|length=599bp
cttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAA
TATAAAGACAGAATATGTTACACGATTTCAAGACAGCACAACCGATCGAA
TTCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATT
ACTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAACACAGCAC
GTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATA
AGTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTT
TGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTG
GCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTT
GCTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAA
AAAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATG
GAAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAAC
ACCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:694672..698162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055417 ID=TCONS_00055417|Name=TCONS_00055417|organism=Clytia hemisphaerica|type=transcript|length=3491bp|location=Sequence derived from alignment at scaffold_253:694672..698162+ (Clytia hemisphaerica)
cttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAA
TATAAAGACAGAATATGTTACACGATTTCAAGTAAGTATTGGATTCAGAA
CCGCACGATTGGAAAGCCGTTTTCCGTGCGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaggtgtcacaaaaattga
cacttttccaatacaaatttattttttatgtcaaatatatcgtttaaacc
gtaatttattgaatatttaagataaaataagcaatttgaaatttaaaaat
ttttggtttttgctcactttgcgcatgatgagtgacgtcatcagaaaaat
ttttcgtcaaaagttaccttatgtgacaaggatcttgtttgccaaatttc
atccaaaaagacccactagatcaaaagttaatgggtggtacaggaaaagc
cccccccccttagttctgaaccgcccctaaatacctaggttgaatagggt
taaagagaTTTCGTGTCACCTATAACCATTAGCTTGTAGCAAACATTATC
TAAAGGATTGAACAGAAAGACAGTTTAAGATCAATCACTGGTGCCCTAAT
CACTGTATCGGTTTTTACCGTGTGTTCCGGTAATGTTTTGTTAAGATTCG
AATATTTGCATAACTTAACAAAACCTTTATTAGAGGCGTGTGAAGTGTAC
CCGGAACTTTCTTTATTACAGAGCgtcattttattaaaagacTTATAATA
GAACTCATCGTCCCTGCTTACTTTATATTTACACACGATGAAATTatatc
actttcactttcttcttcTAAATTTAGGACAGCACAACCGATCGAATTCT
ACAAACACTTCTTGGTATtctttaaaatctttattttacGCACTATGGTT
TAAGTTCCCTCTTTCGTTTCTGAGACACCCAGTGCTACCttaaagggaac
taattttggcgaattcggcGAAAAACTCGGTTctttccaaattgaaatat
tgctGGCTCAAAATTTACCACTAATTTTCtctaaaacacaaattttcagg
caaaaagaaACTGATTCACCCTGtctttcgccaaaattagttctcaccGA
GTTAGATAATTGCTttaaaataagttctcgccaaatttaatgcCAAATTA
GTTCTCTGAAGgtaatattttttatcaataaactATTGTTTTTGTGCCAA
CAATTGTAAATTTCTGCTCGAACATGTTGCTATAAATGCTTTTATGTTCA
TGTATTACTTGTTCATTCTCGtgatttacagaaagaaaacgTCAGACCTG
ATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGTAAG
TTAAAAAGACCTCGTAATACAAATTATAATTGCGTTATGCGTAGGAAATG
GGCCCCAAAAACCTTCTCTATCTCCAAAAACCTTCTGAAACCCCATCGTA
GAATCGTAGCTCGCTCAAATTGTTCGCACTCCACGTGCATACATACTTAC
TTTGactctttcattctttcattttcattctaTAGGATCAATCAACACAG
CACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGT
ATAAGTGCAGTAAGTTAATATGTTGTTGTAACACATTTTGTTTCGACCCC
TTGCATATTAATGGTACTCTTATATAAATGTATAATTCAATGTCATAAGT
Agctcttttttttgaaatcagatatctgaacaatttttgaaaagtaaaac
gctaaaattattCAATTTGACATTTTGTTTACACTTCTATCAGATTTTAC
TTGAAATTATGTTAAAATACATGGACTTGTTATAATCGTGATTTTAAATT
ATTATGTCAATGAATTTCAGGAATTAGCAGAACCAAAAGCGACCACACCA
GACAAAGGATTTTTTGGTAAGGtttgatttttgtatttcaTAGAAAAAGA
TAATTCAAATATATCACAAttggtttttttttataaattcggCTTTTATT
GTACATAAAAAGCTCAATATTAAATACATATTAAATAGGTCGTGTCCGGC
ATTATAAACTTAGGATGTCTGCAAATAGGAAATTTTCAAGGAATATTCGT
TTTCACCATAGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAAT
ACAGACCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTC
CTTGATGTTGCTACTAAGTATTCATATcccttttttttaatcttttctaC
GTTTTTCAATTGTGCGTTGTGGGGTATCTAGCTTGACTGGTTGGCAAGGA
GGATACcctaaaacattaaaaaaagagGTTTAATTTATAGTTGGGGNGGG
GTCTCTAGTGGTTTTCAACCttattttaaatgattttgaCCCCCGGTGGT
ATTCAGATTTGCGAGCTGATGAACTATGCCGGAATAAAACTCTAACCCCC
GGTTTTTAAGCTGGTTgtcttttttcaaataatatatTTTGAACTTTGAA
TGTAAGCTTCTAGTGACTTTTGGAAGCTTCAACTTTGTTTTAATCTatcg
attttattttttagctcAGAAGTATTAAAGCTAGAGAATCTATGTATTGC
TACAAAAAAGGTTAGTAGATCATTTTAATGTGTTTATTTACTGCCTTGCA
TTTAAAAACCCAAAAGAATAAATTTCAGCCTTTTGttcttttgatgaaaa
aatatacaGATATTCTCAGTTAATACAGCTCGCCGACCAGAATCTCTATT
CACTTCAAATATGTATTAAAACATTTGTTTTTCGTTCTAATTTCAGTTAG
CGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTA
AAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACAGTGAGTG
AAGTCGAGTCTTTatttaattcgaagaaaattcctggtcccttgaaaatc
gaattaaagagagagtGATTGTATTtcgtttcaaaaaatattgaatgtcg
atttttacttttttttttctaaagtcaCCCCTGATTCTTTATCTGTGCTG
CTCATTGGTGTTACTTGCTTAAAAACTTTCTTTACTTTTTCAGCCAAACT
TCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034876XLOC_034876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055417-exon-scaffold_253-1491911889:694672..694752TCONS_00055417-exon-scaffold_253-1491911889:694672..694752Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:694672..694752TCONS_00055417-exon-scaffold_253-1510915933:694672..694752Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:694672..694752TCONS_00055417-exon-scaffold_253-1575043694:694672..694752Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:695849..695885TCONS_00055417-exon-scaffold_253-1491911889:695849..695885Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:695849..695885TCONS_00055417-exon-scaffold_253-1510915933:695849..695885Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:695849..695885TCONS_00055417-exon-scaffold_253-1575043694:695849..695885Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:696303..696366TCONS_00055417-exon-scaffold_253-1491911889:696303..696366Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:696303..696366TCONS_00055417-exon-scaffold_253-1510915933:696303..696366Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:696303..696366TCONS_00055417-exon-scaffold_253-1575043694:696303..696366Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:696557..696630TCONS_00055417-exon-scaffold_253-1491911889:696557..696630Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:696557..696630TCONS_00055417-exon-scaffold_253-1510915933:696557..696630Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:696557..696630TCONS_00055417-exon-scaffold_253-1575043694:696557..696630Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:696892..696937TCONS_00055417-exon-scaffold_253-1491911889:696892..696937Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:696892..696937TCONS_00055417-exon-scaffold_253-1510915933:696892..696937Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:696892..696937TCONS_00055417-exon-scaffold_253-1575043694:696892..696937Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:697133..697238TCONS_00055417-exon-scaffold_253-1491911889:697133..697238Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:697133..697238TCONS_00055417-exon-scaffold_253-1510915933:697133..697238Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:697133..697238TCONS_00055417-exon-scaffold_253-1575043694:697133..697238Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:697586..697631TCONS_00055417-exon-scaffold_253-1491911889:697586..697631Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:697586..697631TCONS_00055417-exon-scaffold_253-1510915933:697586..697631Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:697586..697631TCONS_00055417-exon-scaffold_253-1575043694:697586..697631Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:697818..697914TCONS_00055417-exon-scaffold_253-1491911889:697818..697914Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:697818..697914TCONS_00055417-exon-scaffold_253-1510915933:697818..697914Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:697818..697914TCONS_00055417-exon-scaffold_253-1575043694:697818..697914Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1491911889:698115..698162TCONS_00055417-exon-scaffold_253-1491911889:698115..698162Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1510915933:698115..698162TCONS_00055417-exon-scaffold_253-1510915933:698115..698162Clytia hemisphaericaexon
TCONS_00055417-exon-scaffold_253-1575043694:698115..698162TCONS_00055417-exon-scaffold_253-1575043694:698115..698162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:694672..698162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7351	7.30221	3.42892	3.64761	5.99181	1.82869	3.01292	0	5.70854	1.92613	2.17992	3.29436	0	0.0892625	3.57778	3.05001	3.70691	6.55921	0	1.80292	2.95329	3.08923	4.85251	6.76015	2.82397	3.76642e-05	2.3204	0	4.26864	3.3124
Blast
[Close]
BLAST of TCONS_00055417 vs. Swiss-Prot (Human)
Match: EXOS8 (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 4.648e-73
Identity = 101/175 (57.71%), Postives = 132/175 (75.43%), Query Frame = 2 
Query:   65 MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSALVRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSDDAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKDAIIAALYAALRNTKLPTVEYNEETA 589
            M   FKT +P+E+Y+ FLKEN RPDGREL +FR   +NIGSI+TA GSALV+LG+T VICG+ AE A P    PDKG+ VPNVDLPP CS+++R GPP ++AQ+ SQF+ DV  NS++++ E+LCI+  KL WV+Y D+ C+ +DGN+ DA   AL AAL+N +LP V  NEETA
Sbjct:    1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA 175
The following BLAST results are available for this feature:
BLAST of TCONS_00055417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS84.648e-7357.71Exosome complex component RRP43 OS=Homo sapiens GN... [more]
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