TCONS_00055418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055418
Unique NameTCONS_00055418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055418 ID=TCONS_00055418|Name=TCONS_00055418|organism=Clytia hemisphaerica|type=transcript|length=1155bp
cttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAA
TATAAAGACAGAATATGTTACACGATTTCAAGACAGCACAACCGATCGAA
TTCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATT
ACTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAACACAGCAC
GTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATA
AGTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTT
TGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTG
GCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTT
GCTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAA
AAAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATG
GAAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAAC
ACCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGT
CAAACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTT
CAACTTTTGCTCTCTTTCAAGATGAAATCTTACTCGCTGACCCGAccaac
gaagaagaagaaataagCAATGGAACGATCACTATCGTTGTCAACAGTGA
AGGGAAACTTTGCATGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGG
AGAAACTAAAAGTATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTG
TTGAGCTTGGTCACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAACT
CTTTATTACGAACGGGAATCTATTTGTTGGGTCACGCCAATATTGTTCAG
CTGGTATCGATGCTGAAAGGGTAATTTCAAATCACAAACACTACCCATAA
AGAACTAAAATGAGTAAACACCGTTTTGGAGTGGTGTTTCGCTCTAATCA
GAGACGATTTATGAGACATATATTTTGGTAACCATATCATATTAAATCGA
TTTgttaaagcaaagaaaattaatgaaattgaaattatcgATGGCTTGTT
TTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_253:694672..702014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055418 ID=TCONS_00055418|Name=TCONS_00055418|organism=Clytia hemisphaerica|type=transcript|length=7343bp|location=Sequence derived from alignment at scaffold_253:694672..702014+ (Clytia hemisphaerica)
cttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAA
TATAAAGACAGAATATGTTACACGATTTCAAGTAAGTATTGGATTCAGAA
CCGCACGATTGGAAAGCCGTTTTCCGTGCGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaggtgtcacaaaaattga
cacttttccaatacaaatttattttttatgtcaaatatatcgtttaaacc
gtaatttattgaatatttaagataaaataagcaatttgaaatttaaaaat
ttttggtttttgctcactttgcgcatgatgagtgacgtcatcagaaaaat
ttttcgtcaaaagttaccttatgtgacaaggatcttgtttgccaaatttc
atccaaaaagacccactagatcaaaagttaatgggtggtacaggaaaagc
cccccccccttagttctgaaccgcccctaaatacctaggttgaatagggt
taaagagaTTTCGTGTCACCTATAACCATTAGCTTGTAGCAAACATTATC
TAAAGGATTGAACAGAAAGACAGTTTAAGATCAATCACTGGTGCCCTAAT
CACTGTATCGGTTTTTACCGTGTGTTCCGGTAATGTTTTGTTAAGATTCG
AATATTTGCATAACTTAACAAAACCTTTATTAGAGGCGTGTGAAGTGTAC
CCGGAACTTTCTTTATTACAGAGCgtcattttattaaaagacTTATAATA
GAACTCATCGTCCCTGCTTACTTTATATTTACACACGATGAAATTatatc
actttcactttcttcttcTAAATTTAGGACAGCACAACCGATCGAATTCT
ACAAACACTTCTTGGTATtctttaaaatctttattttacGCACTATGGTT
TAAGTTCCCTCTTTCGTTTCTGAGACACCCAGTGCTACCttaaagggaac
taattttggcgaattcggcGAAAAACTCGGTTctttccaaattgaaatat
tgctGGCTCAAAATTTACCACTAATTTTCtctaaaacacaaattttcagg
caaaaagaaACTGATTCACCCTGtctttcgccaaaattagttctcaccGA
GTTAGATAATTGCTttaaaataagttctcgccaaatttaatgcCAAATTA
GTTCTCTGAAGgtaatattttttatcaataaactATTGTTTTTGTGCCAA
CAATTGTAAATTTCTGCTCGAACATGTTGCTATAAATGCTTTTATGTTCA
TGTATTACTTGTTCATTCTCGtgatttacagaaagaaaacgTCAGACCTG
ATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGTAAG
TTAAAAAGACCTCGTAATACAAATTATAATTGCGTTATGCGTAGGAAATG
GGCCCCAAAAACCTTCTCTATCTCCAAAAACCTTCTGAAACCCCATCGTA
GAATCGTAGCTCGCTCAAATTGTTCGCACTCCACGTGCATACATACTTAC
TTTGactctttcattctttcattttcattctaTAGGATCAATCAACACAG
CACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGT
ATAAGTGCAGTAAGTTAATATGTTGTTGTAACACATTTTGTTTCGACCCC
TTGCATATTAATGGTACTCTTATATAAATGTATAATTCAATGTCATAAGT
Agctcttttttttgaaatcagatatctgaacaatttttgaaaagtaaaac
gctaaaattattCAATTTGACATTTTGTTTACACTTCTATCAGATTTTAC
TTGAAATTATGTTAAAATACATGGACTTGTTATAATCGTGATTTTAAATT
ATTATGTCAATGAATTTCAGGAATTAGCAGAACCAAAAGCGACCACACCA
GACAAAGGATTTTTTGGTAAGGtttgatttttgtatttcaTAGAAAAAGA
TAATTCAAATATATCACAAttggtttttttttataaattcggCTTTTATT
GTACATAAAAAGCTCAATATTAAATACATATTAAATAGGTCGTGTCCGGC
ATTATAAACTTAGGATGTCTGCAAATAGGAAATTTTCAAGGAATATTCGT
TTTCACCATAGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAAT
ACAGACCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTC
CTTGATGTTGCTACTAAGTATTCATATcccttttttttaatcttttctaC
GTTTTTCAATTGTGCGTTGTGGGGTATCTAGCTTGACTGGTTGGCAAGGA
GGATACcctaaaacattaaaaaaagagGTTTAATTTATAGTTGGGGNGGG
GTCTCTAGTGGTTTTCAACCttattttaaatgattttgaCCCCCGGTGGT
ATTCAGATTTGCGAGCTGATGAACTATGCCGGAATAAAACTCTAACCCCC
GGTTTTTAAGCTGGTTgtcttttttcaaataatatatTTTGAACTTTGAA
TGTAAGCTTCTAGTGACTTTTGGAAGCTTCAACTTTGTTTTAATCTatcg
attttattttttagctcAGAAGTATTAAAGCTAGAGAATCTATGTATTGC
TACAAAAAAGGTTAGTAGATCATTTTAATGTGTTTATTTACTGCCTTGCA
TTTAAAAACCCAAAAGAATAAATTTCAGCCTTTTGttcttttgatgaaaa
aatatacaGATATTCTCAGTTAATACAGCTCGCCGACCAGAATCTCTATT
CACTTCAAATATGTATTAAAACATTTGTTTTTCGTTCTAATTTCAGTTAG
CGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTA
AAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACAGTGAGTG
AAGTCGAGTCTTTatttaattcgaagaaaattcctggtcccttgaaaatc
gaattaaagagagagtGATTGTATTtcgtttcaaaaaatattgaatgtcg
atttttacttttttttttctaaagtcaCCCCTGATTCTTTATCTGTGCTG
CTCATTGGTGTTACTTGCTTAAAAACTTTCTTTACTTTTTCAGCCAAACT
TCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGNAAAAAAAG
AGGTTTAATTTATAGTTGgggcccgggggggtactacccttgtcgaccga
cgggggtgctccgctgaggttcgaaaaatggaccctacgtgggactcgaa
atttgcgaaaaaaagtgaccctgaNTGGAAGCTTCAACTTTGTTTTAATC
TatcgattttattttttagctcAGAAGTATTAAAGCTAGAGAATCTATGT
ATTGCTACAAAAAAGGTTAGTAGATCATTTTAATGTGTTTATTTACTGCC
TTGCATTTAAAAACCCAAAAGAATAAATTTCAGCCTTTTGttcttttgat
gaaaaaatatacaGATATTCTCAGTTAATACAGCTCGCCGACCAGAATCT
CTATTCACTTCAAATATGTATTAAAACATTTGTTTTTCGTTCTAATTTCA
GTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAA
ATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACAGT
GAGTGAAGTCGAGTCTTTatttaattcgaagaaaattcctggtcccttga
aaatcgaattaaagagagagtGATTGTATTtcgtttcaaaaaatattgaa
tgtcgatttttacttttttttttctaaagtcaCCCCTGATTCTTTATCTG
TGCTGCTCATTGGTGTTACTTGCTTAAAAACTTTCTTTACTTTTTCAGCC
AAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAA
ACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAA
CTTTTGCTCTCTTTCAAGAGTTAGTGTTTCAAACTTTTAGTTCGTTCTAC
AAACCATGCAAATGAACGAGATGAACAAAAAATCTCTACCTAACGATACA
ATTATTGAATGCTTGACTTGAGTGATGATATTGATTTGTCTGCACAGTAA
CCAGCCGAACTTATTGATGCTTTTTGCTCTATTATTTCAATCGAAGAAGT
TTCTGTTAggtttccaggttttccctaaAAGTTTACTTCTGCTGGTGATA
TTTACTACagttactttttggacctacctccgggtgccccggtggaggtc
ctatgaattaacctctgtctgttcgtccgttcgttcgttcgttcgttcgt
tcgtctgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNatcatcaggtaggtccattcagcatgttgct
tgttttgtagattttttttcgatattcttatttaTCTACGGATGTGATGT
CCCGTCAAGTTTCCTTTTTGCACTTTCAGTGAAATCTTACTCGCTGACCC
GAccaacgaagaagaagaaataagCAATGGAACGATCACTATCGTTGTCA
ACAGTGAAGGGAAACTTTGCATGGTCAGCAAACCAGGTATCTTAGATATG
TTATATTCGAAATTCTTTGCATTTTATCTGACGTGATATATCAAATCGAG
AAATCGAAGATGGTCTGACATTGCCACTTCTTCGATACAGCTATGCCTTT
GGGAAATAATTATATAGGATCCCTATCTAAAACTGCAAGGTGTATGTATA
GTCTTTGCAATGTCGACAGTGTCATTTTCTCTAGTCCAGTCTTTTCAGTA
ATATTCCTTCATAATGAGTTTGAACGGTTTCTTTCCTAACTATCGACGAT
ATGCAATCCGTTATATTTCTAATCATATCTAACATGATATAaactttcta
aactttctaaAGTTTCTTTCTGTAAAGTCAGACATTGGACAGAGTGACAC
CTGTTCGAAGGTGAAATCATTCTCAACCTCaatataccttattacacgaa
tattactaggcaagtattcaacggccttgaaatttcgacgatctgaaatt
aacacgaatttttctgctttttcaaggaaacatcggctggttttaattaa
gggagtttttattaacacgaaattatTCAATTCGTGTTTATAAAAtgaat
agtaatatttgtgtaataaggtaatgCAATACTAAATTGAATACCTCTAA
ACACCTCTAATATTCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAG
TATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTC
ACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAACTCTTTATTACGAA
CGGGAATCTATTTGTTGGGTCACGCCAATATTGTTCAGCTGGTATCGATG
CTGAAAGGGTAATTTCAAATCACAAACACTACCCATAAAGAACTAAAATG
AGTAAACACCGTTTTGGAGTGGTGTTTCGCTCTAATCAGAGACGATTTAT
GAGACATATATTTTGGTAACCATATCATATTAAATCGATTTgttaaagca
aagaaaattaatgaaattgaaattatcgATGGCTTGTTTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034876XLOC_034876Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055418-exon-scaffold_253-1491911889:694672..694752TCONS_00055418-exon-scaffold_253-1491911889:694672..694752Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:694672..694752TCONS_00055418-exon-scaffold_253-1510915933:694672..694752Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:694672..694752TCONS_00055418-exon-scaffold_253-1575043694:694672..694752Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:695849..695885TCONS_00055418-exon-scaffold_253-1491911889:695849..695885Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:695849..695885TCONS_00055418-exon-scaffold_253-1510915933:695849..695885Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:695849..695885TCONS_00055418-exon-scaffold_253-1575043694:695849..695885Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:696303..696366TCONS_00055418-exon-scaffold_253-1491911889:696303..696366Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:696303..696366TCONS_00055418-exon-scaffold_253-1510915933:696303..696366Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:696303..696366TCONS_00055418-exon-scaffold_253-1575043694:696303..696366Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:696557..696630TCONS_00055418-exon-scaffold_253-1491911889:696557..696630Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:696557..696630TCONS_00055418-exon-scaffold_253-1510915933:696557..696630Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:696557..696630TCONS_00055418-exon-scaffold_253-1575043694:696557..696630Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:696892..696937TCONS_00055418-exon-scaffold_253-1491911889:696892..696937Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:696892..696937TCONS_00055418-exon-scaffold_253-1510915933:696892..696937Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:696892..696937TCONS_00055418-exon-scaffold_253-1575043694:696892..696937Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:697133..697238TCONS_00055418-exon-scaffold_253-1491911889:697133..697238Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:697133..697238TCONS_00055418-exon-scaffold_253-1510915933:697133..697238Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:697133..697238TCONS_00055418-exon-scaffold_253-1575043694:697133..697238Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:698341..698386TCONS_00055418-exon-scaffold_253-1491911889:698341..698386Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:698341..698386TCONS_00055418-exon-scaffold_253-1510915933:698341..698386Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:698341..698386TCONS_00055418-exon-scaffold_253-1575043694:698341..698386Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:698573..698669TCONS_00055418-exon-scaffold_253-1491911889:698573..698669Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:698573..698669TCONS_00055418-exon-scaffold_253-1510915933:698573..698669Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:698573..698669TCONS_00055418-exon-scaffold_253-1575043694:698573..698669Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:698870..698990TCONS_00055418-exon-scaffold_253-1491911889:698870..698990Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:698870..698990TCONS_00055418-exon-scaffold_253-1510915933:698870..698990Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:698870..698990TCONS_00055418-exon-scaffold_253-1575043694:698870..698990Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:700901..701007TCONS_00055418-exon-scaffold_253-1491911889:700901..701007Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:700901..701007TCONS_00055418-exon-scaffold_253-1510915933:700901..701007Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:700901..701007TCONS_00055418-exon-scaffold_253-1575043694:700901..701007Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1491911889:701639..702014TCONS_00055418-exon-scaffold_253-1491911889:701639..702014Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1510915933:701639..702014TCONS_00055418-exon-scaffold_253-1510915933:701639..702014Clytia hemisphaericaexon
TCONS_00055418-exon-scaffold_253-1575043694:701639..702014TCONS_00055418-exon-scaffold_253-1575043694:701639..702014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:694672..702014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.7018	28.6001	17.8942	7.67994	8.00506	6.71184	9.71583	11.28	2.47335	3.8991	7.45857	2.67245	2.33882	2.04892	5.74137	2.79117	7.39237	10.6471	1.22202	0.927433	2.21304	2.02482	7.23629	12.2595	11.5779	11.9837	1.20285	1.23525	3.20076	11.6369
Blast
[Close]
BLAST of TCONS_00055418 vs. Swiss-Prot (Human)
Match: EXOS8 (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.558e-101
Identity = 142/275 (51.64%), Postives = 196/275 (71.27%), Query Frame = 2 
Query:   65 MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSALVRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSDDAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKDAIIAALYAALRNTKLPTVEYNEETADVQVKQDQLFQLPIQTCPVSSTFALFQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKVCIRTALKRHAEVLSLVTTALGEDEP 889
            M   FKT +P+E+Y+ FLKEN RPDGREL +FR   +NIGSI+TA GSALV+LG+T VICG+ AE A P    PDKG+ VPNVDLPP CS+++R GPP ++AQ+ SQF+ DV  NS++++ E+LCI+  KL WV+Y D+ C+ +DGN+ DA   AL AAL+N +LP V  NEETA  +V   +   L I+T PV+++FA+F D +L+ DPT EEE ++ GT+TIV++ EGKLC + KPGG+ +   KL+ C+  A+ RH EV  L+   +   +P
Sbjct:    1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKP 275
The following BLAST results are available for this feature:
BLAST of TCONS_00055418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS82.558e-10151.64Exosome complex component RRP43 OS=Homo sapiens GN... [more]
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