TCONS_00055420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055420
Unique NameTCONS_00055420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055420 ID=TCONS_00055420|Name=TCONS_00055420|organism=Clytia hemisphaerica|type=transcript|length=1154bp
ttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAAT
ATAAAGACAGAATATGTTACACGATTTCAAGACAGCACAACCGATCGAAT
TCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATTA
CTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAACACAGCACG
TGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATAA
GTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTTT
GTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTGG
CCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTTG
CTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAAA
AAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGG
AAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACA
CCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTC
AAACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTC
AACTTTTGCTCTCTTTCAAGATGAAATCTTACTCGCTGACCCGAccaacg
aagaagaagaaataagCAATGGAACGATCACTATCGTTGTCAACAGTGAA
GGGAAACTTTGCATGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGGA
GAAACTAAAAGTATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGT
TGAGCTTGGTCACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAACTC
TTTATTACGAACGGGAATCTATTTGTTGGGTCACGCCAATATTGTTCAGC
TGGTATCGATGCTGAAAGGGTAATTTCAAATCACAAACACTACCCATAAA
GAACTAAAATGAGTAAACACCGTTTTGGAGTGGTGTTTCGCTCTAATCAG
AGACGATTTATGAGACATATATTTTGGTAACCATATCATATTAAATCGAT
TTgttaaagcaaagaaaattaatgaaattgaaattatcgATGGCTTGTTT
TGCT
Run BLAST on NCBI

protein sequence of TCONS_00055420-protein

>TCONS_00055420-protein ID=TCONS_00055420-protein|Name=TCONS_00055420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSAL
VRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSD
DAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKD
AIIAALYAALRNTKLPTVEYNEETADVQVKQDQLFQLPIQTCPVSSTFAL
FQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKV
CIRTALKRHAEVLSLVTTALGEDEPVR
Run BLAST on NCBI

transcript from alignment at scaffold_253:694673..702014+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055420 ID=TCONS_00055420|Name=TCONS_00055420|organism=Clytia hemisphaerica|type=transcript|length=7342bp|location=Sequence derived from alignment at scaffold_253:694673..702014+ (Clytia hemisphaerica)
ttcagaGAAACAcatcacaaaaataaaaaaatacaaaccGGACGGTTAAT ATAAAGACAGAATATGTTACACGATTTCAAGTAAGTATTGGATTCAGAAC CGCACGATTGGAAAGCCGTTTTCCGTGCGNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaggtgtcacaaaaattgac acttttccaatacaaatttattttttatgtcaaatatatcgtttaaaccg taatttattgaatatttaagataaaataagcaatttgaaatttaaaaatt tttggtttttgctcactttgcgcatgatgagtgacgtcatcagaaaaatt tttcgtcaaaagttaccttatgtgacaaggatcttgtttgccaaatttca tccaaaaagacccactagatcaaaagttaatgggtggtacaggaaaagcc ccccccccttagttctgaaccgcccctaaatacctaggttgaatagggtt aaagagaTTTCGTGTCACCTATAACCATTAGCTTGTAGCAAACATTATCT AAAGGATTGAACAGAAAGACAGTTTAAGATCAATCACTGGTGCCCTAATC ACTGTATCGGTTTTTACCGTGTGTTCCGGTAATGTTTTGTTAAGATTCGA ATATTTGCATAACTTAACAAAACCTTTATTAGAGGCGTGTGAAGTGTACC CGGAACTTTCTTTATTACAGAGCgtcattttattaaaagacTTATAATAG AACTCATCGTCCCTGCTTACTTTATATTTACACACGATGAAATTatatca ctttcactttcttcttcTAAATTTAGGACAGCACAACCGATCGAATTCTA CAAACACTTCTTGGTATtctttaaaatctttattttacGCACTATGGTTT AAGTTCCCTCTTTCGTTTCTGAGACACCCAGTGCTACCttaaagggaact aattttggcgaattcggcGAAAAACTCGGTTctttccaaattgaaatatt gctGGCTCAAAATTTACCACTAATTTTCtctaaaacacaaattttcaggc aaaaagaaACTGATTCACCCTGtctttcgccaaaattagttctcaccGAG TTAGATAATTGCTttaaaataagttctcgccaaatttaatgcCAAATTAG TTCTCTGAAGgtaatattttttatcaataaactATTGTTTTTGTGCCAAC AATTGTAAATTTCTGCTCGAACATGTTGCTATAAATGCTTTTATGTTCAT GTATTACTTGTTCATTCTCGtgatttacagaaagaaaacgTCAGACCTGA TGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGTAAGT TAAAAAGACCTCGTAATACAAATTATAATTGCGTTATGCGTAGGAAATGG GCCCCAAAAACCTTCTCTATCTCCAAAAACCTTCTGAAACCCCATCGTAG AATCGTAGCTCGCTCAAATTGTTCGCACTCCACGTGCATACATACTTACT TTGactctttcattctttcattttcattctaTAGGATCAATCAACACAGC ACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTA TAAGTGCAGTAAGTTAATATGTTGTTGTAACACATTTTGTTTCGACCCCT TGCATATTAATGGTACTCTTATATAAATGTATAATTCAATGTCATAAGTA gctcttttttttgaaatcagatatctgaacaatttttgaaaagtaaaacg ctaaaattattCAATTTGACATTTTGTTTACACTTCTATCAGATTTTACT TGAAATTATGTTAAAATACATGGACTTGTTATAATCGTGATTTTAAATTA TTATGTCAATGAATTTCAGGAATTAGCAGAACCAAAAGCGACCACACCAG ACAAAGGATTTTTTGGTAAGGtttgatttttgtatttcaTAGAAAAAGAT AATTCAAATATATCACAAttggtttttttttataaattcggCTTTTATTG TACATAAAAAGCTCAATATTAAATACATATTAAATAGGTCGTGTCCGGCA TTATAAACTTAGGATGTCTGCAAATAGGAAATTTTCAAGGAATATTCGTT TTCACCATAGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATA CAGACCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCC TTGATGTTGCTACTAAGTATTCATATcccttttttttaatcttttctaCG TTTTTCAATTGTGCGTTGTGGGGTATCTAGCTTGACTGGTTGGCAAGGAG GATACcctaaaacattaaaaaaagagGTTTAATTTATAGTTGGGGNGGGG TCTCTAGTGGTTTTCAACCttattttaaatgattttgaCCCCCGGTGGTA TTCAGATTTGCGAGCTGATGAACTATGCCGGAATAAAACTCTAACCCCCG GTTTTTAAGCTGGTTgtcttttttcaaataatatatTTTGAACTTTGAAT GTAAGCTTCTAGTGACTTTTGGAAGCTTCAACTTTGTTTTAATCTatcga ttttattttttagctcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCT ACAAAAAAGGTTAGTAGATCATTTTAATGTGTTTATTTACTGCCTTGCAT TTAAAAACCCAAAAGAATAAATTTCAGCCTTTTGttcttttgatgaaaaa atatacaGATATTCTCAGTTAATACAGCTCGCCGACCAGAATCTCTATTC ACTTCAAATATGTATTAAAACATTTGTTTTTCGTTCTAATTTCAGTTAGC GTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTAA AAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACAGTGAGTGA AGTCGAGTCTTTatttaattcgaagaaaattcctggtcccttgaaaatcg aattaaagagagagtGATTGTATTtcgtttcaaaaaatattgaatgtcga tttttacttttttttttctaaagtcaCCCCTGATTCTTTATCTGTGCTGC TCATTGGTGTTACTTGCTTAAAAACTTTCTTTACTTTTTCAGCCAAACTT CCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGNAAAAAAAGA GGTTTAATTTATAGTTGgggcccgggggggtactacccttgtcgaccgac gggggtgctccgctgaggttcgaaaaatggaccctacgtgggactcgaaa tttgcgaaaaaaagtgaccctgaNTGGAAGCTTCAACTTTGTTTTAATCT atcgattttattttttagctcAGAAGTATTAAAGCTAGAGAATCTATGTA TTGCTACAAAAAAGGTTAGTAGATCATTTTAATGTGTTTATTTACTGCCT TGCATTTAAAAACCCAAAAGAATAAATTTCAGCCTTTTGttcttttgatg aaaaaatatacaGATATTCTCAGTTAATACAGCTCGCCGACCAGAATCTC TATTCACTTCAAATATGTATTAAAACATTTGTTTTTCGTTCTAATTTCAG TTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAA TCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACAGTG AGTGAAGTCGAGTCTTTatttaattcgaagaaaattcctggtcccttgaa aatcgaattaaagagagagtGATTGTATTtcgtttcaaaaaatattgaat gtcgatttttacttttttttttctaaagtcaCCCCTGATTCTTTATCTGT GCTGCTCATTGGTGTTACTTGCTTAAAAACTTTCTTTACTTTTTCAGCCA AACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAAA CAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAAC TTTTGCTCTCTTTCAAGAGTTAGTGTTTCAAACTTTTAGTTCGTTCTACA AACCATGCAAATGAACGAGATGAACAAAAAATCTCTACCTAACGATACAA TTATTGAATGCTTGACTTGAGTGATGATATTGATTTGTCTGCACAGTAAC CAGCCGAACTTATTGATGCTTTTTGCTCTATTATTTCAATCGAAGAAGTT TCTGTTAggtttccaggttttccctaaAAGTTTACTTCTGCTGGTGATAT TTACTACagttactttttggacctacctccgggtgccccggtggaggtcc tatgaattaacctctgtctgttcgtccgttcgttcgttcgttcgttcgtt cgtctgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNatcatcaggtaggtccattcagcatgttgctt gttttgtagattttttttcgatattcttatttaTCTACGGATGTGATGTC CCGTCAAGTTTCCTTTTTGCACTTTCAGTGAAATCTTACTCGCTGACCCG AccaacgaagaagaagaaataagCAATGGAACGATCACTATCGTTGTCAA CAGTGAAGGGAAACTTTGCATGGTCAGCAAACCAGGTATCTTAGATATGT TATATTCGAAATTCTTTGCATTTTATCTGACGTGATATATCAAATCGAGA AATCGAAGATGGTCTGACATTGCCACTTCTTCGATACAGCTATGCCTTTG GGAAATAATTATATAGGATCCCTATCTAAAACTGCAAGGTGTATGTATAG TCTTTGCAATGTCGACAGTGTCATTTTCTCTAGTCCAGTCTTTTCAGTAA TATTCCTTCATAATGAGTTTGAACGGTTTCTTTCCTAACTATCGACGATA TGCAATCCGTTATATTTCTAATCATATCTAACATGATATAaactttctaa actttctaaAGTTTCTTTCTGTAAAGTCAGACATTGGACAGAGTGACACC TGTTCGAAGGTGAAATCATTCTCAACCTCaatataccttattacacgaat attactaggcaagtattcaacggccttgaaatttcgacgatctgaaatta acacgaatttttctgctttttcaaggaaacatcggctggttttaattaag ggagtttttattaacacgaaattatTCAATTCGTGTTTATAAAAtgaata gtaatatttgtgtaataaggtaatgCAATACTAAATTGAATACCTCTAAA CACCTCTAATATTCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAGT ATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTCA CTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAACTCTTTATTACGAAC GGGAATCTATTTGTTGGGTCACGCCAATATTGTTCAGCTGGTATCGATGC TGAAAGGGTAATTTCAAATCACAAACACTACCCATAAAGAACTAAAATGA GTAAACACCGTTTTGGAGTGGTGTTTCGCTCTAATCAGAGACGATTTATG AGACATATATTTTGGTAACCATATCATATTAAATCGATTTgttaaagcaa agaaaattaatgaaattgaaattatcgATGGCTTGTTTTGCT

Coding sequence (CDS) from alignment at scaffold_253:694673..702014+

>TCONS_00055420 ID=TCONS_00055420|Name=TCONS_00055420|organism=Clytia hemisphaerica|type=CDS|length=9174bp|location=Sequence derived from alignment at scaffold_253:694673..702014+ (Clytia hemisphaerica)
ATGTTACACGATTTCAAGACAGCACAACCGATCGAATTCTACAAACACTT
CTTGaaagaaaacgTCAGACCTGATGGAAGAGAATTACTTAAGTTTCGAG
ATGCGCTGTTAAACATCGGATCAATCAACACAGCACGTGGGTCGGCTTTG
GTTCGTCTTGGTCACACAATGGTCATTTGCGGTATAAGTGCAGAATTAGC
AGAACCAAAAGCGACCACACCAGACAAAGGATTTTTTGTTCCAAATGTAG
ACCTTCCACCTTCTTGTTCGAATAAATACAGACCTGGCCCTCCATCTGAT
GATGCGCAGATTCTTTCACAATTCGTCCTTGATGTTGCTACTAActcAGA
AGTATTAAAGCTAGAGAATCTATGTATTGCTACAAAAAAGTTAGCGTGGG
TGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTAAAAGAT
GCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACACCAAACTTCCGAC
CGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAAACAAGACCAAC
TTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAACTTTTGCTCTC
TTTCAAGATGAAATCTTACTCGCTGACCCGAccaacgaagaagaagaaat
aagCAATGGAACGATCACTATCGTTGTCAACAGTGAAGGGAAACTTTGCA
TGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAGTA
TGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTCAC
TACAGCTCTTGGTGAAGATGAACCTGTAAGGTAAATGTTACACGATTTCA
AGACAGCACAACCGATCGAATTCTACAAACACTTCTTGaaagaaaacgTC
AGACCTGATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAACAT
CGGATCAATCAACACAGCACGTGGGTCGGCTTTGGTTCGTCTTGGTCACA
CAATGGTCATTTGCGGTATAAGTGCAGAATTAGCAGAACCAAAAGCGACC
ACACCAGACAAAGGATTTTTTGTTCCAAATGTAGACCTTCCACCTTCTTG
TTCGAATAAATACAGACCTGGCCCTCCATCTGATGATGCGCAGATTCTTT
CACAATTCGTCCTTGATGTTGCTACTAActcAGAAGTATTAAAGCTAGAG
AATCTATGTATTGCTACAAAAAAGTTAGCGTGGGTGATATATGCAGATAT
TCAATGTATAAGTCACGATGGAAATCTAAAAGATGCAATCATTGCTGCGC
TATACGCTGCCTTGCGAAACACCAAACTTCCGACCGTTGAATACAACGAA
GAAACAGCAGACGTTCAAGTCAAACAAGACCAACTTTTTCAACTTCCCAT
TCAAACGTGCCCTGTTTCTTCAACTTTTGCTCTCTTTCAAGATGAAATCT
TACTCGCTGACCCGAccaacgaagaagaagaaataagCAATGGAACGATC
ACTATCGTTGTCAACAGTGAAGGGAAACTTTGCATGGTCAGCAAACCAGG
TGGAGCGGAGATGAAGGAGGAGAAACTAAAAGTATGTATTCGAACGGCCT
TGAAAAGACACGCGGAGGTGTTGAGCTTGGTCACTACAGCTCTTGGTGAA
GATGAACCTGTAAGGTAAATGTTACACGATTTCAAGACAGCACAACCGAT
CGAATTCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAG
AATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAACACA
GCACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGG
TATAAGTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAAGGAT
TTTTTGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATACAGA
CCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCCTTGA
TGTTGCTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTA
CAAAAAAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTCAC
GATGGAAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCG
AAACACCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTC
AAGTCAAACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTT
TCTTCAACTTTTGCTCTCTTTCAAGATGAAATCTTACTCGCTGACCCGAc
caacgaagaagaagaaataagCAATGGAACGATCACTATCGTTGTCAACA
GTGAAGGGAAACTTTGCATGGTCAGCAAACCAGGTGGAGCGGAGATGAAG
GAGGAGAAACTAAAAGTATGTATTCGAACGGCCTTGAAAAGACACGCGGA
GGTGTTGAGCTTGGTCACTACAGCTCTTGGTGAAGATGAACCTGTAAGGT
AAATGTTACACGATTTCAAGACAGCACAACCGATCGAATTCTACAAACAC
TTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATTACTTAAGTTTCG
AGATGCGCTGTTAAACATCGGATCAATCAACACAGCACGTGGGTCGGCTT
TGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATAAGTGCAGAATTA
GCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTTTGTTCCAAATGT
AGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTGGCCCTCCATCTG
ATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTTGCTACTAActcA
GAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAAAAAGTTAGCGTG
GGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTAAAAG
ATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACACCAAACTTCCG
ACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAAACAAGACCA
ACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAACTTTTGCTC
TCTTTCAAGATGAAATCTTACTCGCTGACCCGAccaacgaagaagaagaa
ataagCAATGGAACGATCACTATCGTTGTCAACAGTGAAGGGAAACTTTG
CATGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAG
TATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTC
ACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAAATGTTACACGATTT
CAAGACAGCACAACCGATCGAATTCTACAAACACTTCTTGaaagaaaacg
TCAGACCTGATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAAC
ATCGGATCAATCAACACAGCACGTGGGTCGGCTTTGGTTCGTCTTGGTCA
CACAATGGTCATTTGCGGTATAAGTGCAGAATTAGCAGAACCAAAAGCGA
CCACACCAGACAAAGGATTTTTTGTTCCAAATGTAGACCTTCCACCTTCT
TGTTCGAATAAATACAGACCTGGCCCTCCATCTGATGATGCGCAGATTCT
TTCACAATTCGTCCTTGATGTTGCTACTAActcAGAAGTATTAAAGCTAG
AGAATCTATGTATTGCTACAAAAAAGTTAGCGTGGGTGATATATGCAGAT
ATTCAATGTATAAGTCACGATGGAAATCTAAAAGATGCAATCATTGCTGC
GCTATACGCTGCCTTGCGAAACACCAAACTTCCGACCGTTGAATACAACG
AAGAAACAGCAGACGTTCAAGTCAAACAAGACCAACTTTTTCAACTTCCC
ATTCAAACGTGCCCTGTTTCTTCAACTTTTGCTCTCTTTCAAGATGAAAT
CTTACTCGCTGACCCGAccaacgaagaagaagaaataagCAATGGAACGA
TCACTATCGTTGTCAACAGTGAAGGGAAACTTTGCATGGTCAGCAAACCA
GGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAGTATGTATTCGAACGGC
CTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTCACTACAGCTCTTGGTG
AAGATGAACCTGTAAGGTAAATGTTACACGATTTCAAGACAGCACAACCG
ATCGAATTCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGAAG
AGAATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAACA
CAGCACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGC
GGTATAAGTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAAGG
ATTTTTTGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATACA
GACCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCCTT
GATGTTGCTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATTGC
TACAAAAAAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAGTC
ACGATGGAAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCTTG
CGAAACACCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGACGT
TCAAGTCAAACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTG
TTTCTTCAACTTTTGCTCTCTTTCAAGATGAAATCTTACTCGCTGACCCG
AccaacgaagaagaagaaataagCAATGGAACGATCACTATCGTTGTCAA
CAGTGAAGGGAAACTTTGCATGGTCAGCAAACCAGGTGGAGCGGAGATGA
AGGAGGAGAAACTAAAAGTATGTATTCGAACGGCCTTGAAAAGACACGCG
GAGGTGTTGAGCTTGGTCACTACAGCTCTTGGTGAAGATGAACCTGTAAG
GTAAATGTTACACGATTTCAAGACAGCACAACCGATCGAATTCTACAAAC
ACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATTACTTAAGTTT
CGAGATGCGCTGTTAAACATCGGATCAATCAACACAGCACGTGGGTCGGC
TTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATAAGTGCAGAAT
TAGCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTTTGTTCCAAAT
GTAGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTGGCCCTCCATC
TGATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTTGCTACTAAct
cAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAAAAAGTTAGCG
TGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTAAA
AGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACACCAAACTTC
CGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAAACAAGAC
CAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAACTTTTGC
TCTCTTTCAAGATGAAATCTTACTCGCTGACCCGAccaacgaagaagaag
aaataagCAATGGAACGATCACTATCGTTGTCAACAGTGAAGGGAAACTT
TGCATGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAA
AGTATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGG
TCACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAAATGTTACACGAT
TTCAAGACAGCACAACCGATCGAATTCTACAAACACTTCTTGaaagaaaa
cgTCAGACCTGATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTTAA
ACATCGGATCAATCAACACAGCACGTGGGTCGGCTTTGGTTCGTCTTGGT
CACACAATGGTCATTTGCGGTATAAGTGCAGAATTAGCAGAACCAAAAGC
GACCACACCAGACAAAGGATTTTTTGTTCCAAATGTAGACCTTCCACCTT
CTTGTTCGAATAAATACAGACCTGGCCCTCCATCTGATGATGCGCAGATT
CTTTCACAATTCGTCCTTGATGTTGCTACTAActcAGAAGTATTAAAGCT
AGAGAATCTATGTATTGCTACAAAAAAGTTAGCGTGGGTGATATATGCAG
ATATTCAATGTATAAGTCACGATGGAAATCTAAAAGATGCAATCATTGCT
GCGCTATACGCTGCCTTGCGAAACACCAAACTTCCGACCGTTGAATACAA
CGAAGAAACAGCAGACGTTCAAGTCAAACAAGACCAACTTTTTCAACTTC
CCATTCAAACGTGCCCTGTTTCTTCAACTTTTGCTCTCTTTCAAGATGAA
ATCTTACTCGCTGACCCGAccaacgaagaagaagaaataagCAATGGAAC
GATCACTATCGTTGTCAACAGTGAAGGGAAACTTTGCATGGTCAGCAAAC
CAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAGTATGTATTCGAACG
GCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTCACTACAGCTCTTGG
TGAAGATGAACCTGTAAGGTAAATGTTACACGATTTCAAGACAGCACAAC
CGATCGAATTCTACAAACACTTCTTGaaagaaaacgTCAGACCTGATGGA
AGAGAATTACTTAAGTTTCGAGATGCGCTGTTAAACATCGGATCAATCAA
CACAGCACGTGGGTCGGCTTTGGTTCGTCTTGGTCACACAATGGTCATTT
GCGGTATAAGTGCAGAATTAGCAGAACCAAAAGCGACCACACCAGACAAA
GGATTTTTTGTTCCAAATGTAGACCTTCCACCTTCTTGTTCGAATAAATA
CAGACCTGGCCCTCCATCTGATGATGCGCAGATTCTTTCACAATTCGTCC
TTGATGTTGCTACTAActcAGAAGTATTAAAGCTAGAGAATCTATGTATT
GCTACAAAAAAGTTAGCGTGGGTGATATATGCAGATATTCAATGTATAAG
TCACGATGGAAATCTAAAAGATGCAATCATTGCTGCGCTATACGCTGCCT
TGCGAAACACCAAACTTCCGACCGTTGAATACAACGAAGAAACAGCAGAC
GTTCAAGTCAAACAAGACCAACTTTTTCAACTTCCCATTCAAACGTGCCC
TGTTTCTTCAACTTTTGCTCTCTTTCAAGATGAAATCTTACTCGCTGACC
CGAccaacgaagaagaagaaataagCAATGGAACGATCACTATCGTTGTC
AACAGTGAAGGGAAACTTTGCATGGTCAGCAAACCAGGTGGAGCGGAGAT
GAAGGAGGAGAAACTAAAAGTATGTATTCGAACGGCCTTGAAAAGACACG
CGGAGGTGTTGAGCTTGGTCACTACAGCTCTTGGTGAAGATGAACCTGTA
AGGTAAATGTTACACGATTTCAAGACAGCACAACCGATCGAATTCTACAA
ACACTTCTTGaaagaaaacgTCAGACCTGATGGAAGAGAATTACTTAAGT
TTCGAGATGCGCTGTTAAACATCGGATCAATCAACACAGCACGTGGGTCG
GCTTTGGTTCGTCTTGGTCACACAATGGTCATTTGCGGTATAAGTGCAGA
ATTAGCAGAACCAAAAGCGACCACACCAGACAAAGGATTTTTTGTTCCAA
ATGTAGACCTTCCACCTTCTTGTTCGAATAAATACAGACCTGGCCCTCCA
TCTGATGATGCGCAGATTCTTTCACAATTCGTCCTTGATGTTGCTACTAA
ctcAGAAGTATTAAAGCTAGAGAATCTATGTATTGCTACAAAAAAGTTAG
CGTGGGTGATATATGCAGATATTCAATGTATAAGTCACGATGGAAATCTA
AAAGATGCAATCATTGCTGCGCTATACGCTGCCTTGCGAAACACCAAACT
TCCGACCGTTGAATACAACGAAGAAACAGCAGACGTTCAAGTCAAACAAG
ACCAACTTTTTCAACTTCCCATTCAAACGTGCCCTGTTTCTTCAACTTTT
GCTCTCTTTCAAGATGAAATCTTACTCGCTGACCCGAccaacgaagaaga
agaaataagCAATGGAACGATCACTATCGTTGTCAACAGTGAAGGGAAAC
TTTGCATGGTCAGCAAACCAGGTGGAGCGGAGATGAAGGAGGAGAAACTA
AAAGTATGTATTCGAACGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTT
GGTCACTACAGCTCTTGGTGAAGATGAACCTGTAAGGTAAATGTTACACG
ATTTCAAGACAGCACAACCGATCGAATTCTACAAACACTTCTTGaaagaa
aacgTCAGACCTGATGGAAGAGAATTACTTAAGTTTCGAGATGCGCTGTT
AAACATCGGATCAATCAACACAGCACGTGGGTCGGCTTTGGTTCGTCTTG
GTCACACAATGGTCATTTGCGGTATAAGTGCAGAATTAGCAGAACCAAAA
GCGACCACACCAGACAAAGGATTTTTTGTTCCAAATGTAGACCTTCCACC
TTCTTGTTCGAATAAATACAGACCTGGCCCTCCATCTGATGATGCGCAGA
TTCTTTCACAATTCGTCCTTGATGTTGCTACTAActcAGAAGTATTAAAG
CTAGAGAATCTATGTATTGCTACAAAAAAGTTAGCGTGGGTGATATATGC
AGATATTCAATGTATAAGTCACGATGGAAATCTAAAAGATGCAATCATTG
CTGCGCTATACGCTGCCTTGCGAAACACCAAACTTCCGACCGTTGAATAC
AACGAAGAAACAGCAGACGTTCAAGTCAAACAAGACCAACTTTTTCAACT
TCCCATTCAAACGTGCCCTGTTTCTTCAACTTTTGCTCTCTTTCAAGATG
AAATCTTACTCGCTGACCCGAccaacgaagaagaagaaataagCAATGGA
ACGATCACTATCGTTGTCAACAGTGAAGGGAAACTTTGCATGGTCAGCAA
ACCAGGTGGAGCGGAGATGAAGGAGGAGAAACTAAAAGTATGTATTCGAA
CGGCCTTGAAAAGACACGCGGAGGTGTTGAGCTTGGTCACTACAGCTCTT
GGTGAAGATGAACCTGTAAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034876XLOC_034876Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055420-proteinTCONS_00055420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055420-exon-scaffold_253-1491911889:694673..694752TCONS_00055420-exon-scaffold_253-1491911889:694673..694752Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:694673..694752TCONS_00055420-exon-scaffold_253-1510915933:694673..694752Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:694673..694752TCONS_00055420-exon-scaffold_253-1575043694:694673..694752Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:695849..695885TCONS_00055420-exon-scaffold_253-1491911889:695849..695885Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:695849..695885TCONS_00055420-exon-scaffold_253-1510915933:695849..695885Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:695849..695885TCONS_00055420-exon-scaffold_253-1575043694:695849..695885Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:696303..696366TCONS_00055420-exon-scaffold_253-1491911889:696303..696366Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:696303..696366TCONS_00055420-exon-scaffold_253-1510915933:696303..696366Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:696303..696366TCONS_00055420-exon-scaffold_253-1575043694:696303..696366Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:696557..696630TCONS_00055420-exon-scaffold_253-1491911889:696557..696630Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:696557..696630TCONS_00055420-exon-scaffold_253-1510915933:696557..696630Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:696557..696630TCONS_00055420-exon-scaffold_253-1575043694:696557..696630Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:696892..696937TCONS_00055420-exon-scaffold_253-1491911889:696892..696937Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:696892..696937TCONS_00055420-exon-scaffold_253-1510915933:696892..696937Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:696892..696937TCONS_00055420-exon-scaffold_253-1575043694:696892..696937Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:697133..697238TCONS_00055420-exon-scaffold_253-1491911889:697133..697238Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:697133..697238TCONS_00055420-exon-scaffold_253-1510915933:697133..697238Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:697133..697238TCONS_00055420-exon-scaffold_253-1575043694:697133..697238Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:697586..697631TCONS_00055420-exon-scaffold_253-1491911889:697586..697631Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:697586..697631TCONS_00055420-exon-scaffold_253-1510915933:697586..697631Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:697586..697631TCONS_00055420-exon-scaffold_253-1575043694:697586..697631Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:697818..697914TCONS_00055420-exon-scaffold_253-1491911889:697818..697914Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:697818..697914TCONS_00055420-exon-scaffold_253-1510915933:697818..697914Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:697818..697914TCONS_00055420-exon-scaffold_253-1575043694:697818..697914Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:698870..698990TCONS_00055420-exon-scaffold_253-1491911889:698870..698990Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:698870..698990TCONS_00055420-exon-scaffold_253-1510915933:698870..698990Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:698870..698990TCONS_00055420-exon-scaffold_253-1575043694:698870..698990Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:700901..701007TCONS_00055420-exon-scaffold_253-1491911889:700901..701007Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:700901..701007TCONS_00055420-exon-scaffold_253-1510915933:700901..701007Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:700901..701007TCONS_00055420-exon-scaffold_253-1575043694:700901..701007Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1491911889:701639..702014TCONS_00055420-exon-scaffold_253-1491911889:701639..702014Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1510915933:701639..702014TCONS_00055420-exon-scaffold_253-1510915933:701639..702014Clytia hemisphaericaexon
TCONS_00055420-exon-scaffold_253-1575043694:701639..702014TCONS_00055420-exon-scaffold_253-1575043694:701639..702014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:694673..702014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.2568 25.4295 17.1684 28.6564 0.0806971 0.650059 0.0108629 0.00954859 11.9587 13.5392 1.43562 10.142 10.0238 11.0819 3.08096 12.5988 3.51067 1.97438 4.49748 3.83037 9.59571 7.79059 29.6974 8.66898 0.000159263 0.00170745 5.12804 4.83378 12.9564 0.679887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
Blast
BLAST of TCONS_00055420 vs. Swiss-Prot (Human)
Match: EXOS8 (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.558e-101
Identity = 142/275 (51.64%), Postives = 196/275 (71.27%), Query Frame = 1
Query:   64 MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSALVRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSDDAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKDAIIAALYAALRNTKLPTVEYNEETADVQVKQDQLFQLPIQTCPVSSTFALFQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKVCIRTALKRHAEVLSLVTTALGEDEP 888
            M   FKT +P+E+Y+ FLKEN RPDGREL +FR   +NIGSI+TA GSALV+LG+T VICG+ AE A P    PDKG+ VPNVDLPP CS+++R GPP ++AQ+ SQF+ DV  NS++++ E+LCI+  KL WV+Y D+ C+ +DGN+ DA   AL AAL+N +LP V  NEETA  +V   +   L I+T PV+++FA+F D +L+ DPT EEE ++ GT+TIV++ EGKLC + KPGG+ +   KL+ C+  A+ RH EV  L+   +   +P
Sbjct:    1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKP 275          
The following BLAST results are available for this feature:
BLAST of TCONS_00055420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS82.558e-10151.64Exosome complex component RRP43 OS=Homo sapiens GN... [more]
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