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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055422 ID=TCONS_00055422|Name=TCONS_00055422|organism=Clytia hemisphaerica|type=transcript|length=2314bpRun BLAST on NCBI protein sequence of TCONS_00055422-protein >TCONS_00055422-protein ID=TCONS_00055422-protein|Name=TCONS_00055422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp MKEDTKVYLSRVCSGPLAEQWVNLEQLYDKKLYHELTIELLKFVKHEHFQRun BLAST on NCBI transcript from alignment at scaffold_253:723826..748303+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055422 ID=TCONS_00055422|Name=TCONS_00055422|organism=Clytia hemisphaerica|type=transcript|length=24478bp|location=Sequence derived from alignment at scaffold_253:723826..748303+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:723826..748303+ >TCONS_00055422 ID=TCONS_00055422|Name=TCONS_00055422|organism=Clytia hemisphaerica|type=CDS|length=18096bp|location=Sequence derived from alignment at scaffold_253:723826..748303+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055422 vs. Swiss-Prot (Human)
Match: PSD13 (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=2) HSP 1 Score: 359.762 bits (922), Expect = 3.332e-116 Identity = 187/362 (51.66%), Postives = 253/362 (69.89%), Query Frame = 2
Query: 128 SGP-LAEQWVNLEQLYDKKLYHELTIELLKFVKHEHFQQNGGLLELYENFLSTIEHRINPLSFTEIMLVISGEVKEYEKALELFSKVEEKIKTCVEGKVLCLITKGSLHLKANKLDLTKEAIKSAEXXXXXXXXXXXXHARFYDLSSNYSKIVGAYNEFYKDALRYLGCLDITELKGDELRQRAFNLSLAALLGNEVYNFGELLAHDVLEYLKGTEHAWLIDVLFAFNSGNIQKFLDMKSKWAQQPDLAANETALLQKITLLCLMELAFSRKSTDRSFSFDAVAKETRLPVNEVELLVMKALSLGLIKGTIDEVEKMIHITWVQPRVLDKDQIGKLRELIGLWGEKVKSSVYLVEEQVPELM 1210
SGP W LE+LY KKL+H+LT+++L FV+ F Q GL++LYENF+S EHR+NPLS EI+L + ++ + AL K EK+K+ E +LC G+L L L +TKE I+ E +L+ L GVT+VH+RFYDLSS Y + +G + +YKDALR+LGC+DI +L E ++RAF L LA LLG V+NFGELL H VLE L+ T+ WLID L+AFNSGN+++F +K+ W QQPDLAANE LL+KI LLCLME+ F+R + R +F+ +AK ++ VNEVELLVMKALS+GL+KG+IDEV+K +H+TWVQPRVLD QI +++ + W VKS LVE Q +++
Sbjct: 14 SGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375 The following BLAST results are available for this feature:
BLAST of TCONS_00055422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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