TCONS_00055424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055424
Unique NameTCONS_00055424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055424 ID=TCONS_00055424|Name=TCONS_00055424|organism=Clytia hemisphaerica|type=transcript|length=1448bp
AAACGATTAGCCTAGTTTCTTAAGAATAATGTTTTCGGGCTAGTTAtagt
cgaaaacgaaagtgcttttTGGTCACAAGATCtctaaaaattttctctgc
aacCCAACACAAACTCAAACTGCAGCGCTGCAAACACCCACTCAAAGTCA
AAATGGCAAAGGTATTTggtgttttatgtttttttcatttggtAGTTGGC
ACTCTCTCTTTGGCTACAAATGTTACTGTTCCTGTTGTGATCTGGCATGG
GATGGGTGATTCTTGCTGCAATCCTCTCAGTATGGGAAACATAAAAAAGA
TGGTTGAGAAAAAGATACCTGGTGTCTATGTTAGATCATTGATGATTGGA
AACAGTGTAGTGGAGGATACTGAGAATGGCTTTTTAATGGGTGGAGACGA
GCAAGTGCAGCAAGTTTGTGACAAGCTTGCCTCTgatgagaaattgaaaa
atggcTATCATGCTATGGGATTCTCTCAAGGAGGACAATTTCTGCGAGCA
GTTGCCCAGAGATGTCCAAATCCAccaatgaaaaatttaatctcTTTTGG
AGGACAGCATCAAGGTGTGTATGGATTTCCAAGATGTCCTGGTGAAGCAT
CTATCCTTTGTGATTACATGAGAAAACTCTTGAACCTTGGTGCATACACA
TCTTACGTACAAAAACATTTGGTTCAAGCTCAATACTGGCACGATCCTTT
GAATGAAGCTGAATATAGAAATGTCTCCTTGTTTTTGGCTGATATCAATC
AAGAAAAGAAAGTCAATCCAGATTACaaaacaaatttgatgaaattgcAG
AACTTTGTAATGGTTAAATTCTCTAAAGATACCATGGTTGATCCAAGAGA
CTCAGAGTGGTTTGGATTTTACAAGCCTGGTCAAGCAAAAGAAGTTTATA
AATTGCAAGAAAGTCCTCTTTACACCGAGGATCGATTAGGATTGAAAGAA
ATGGATGCAGCTGGAAAACTTCATTTCTTGACCGCAGAAGGTAATCATCT
TCAGTTCTCACAAGATTTCTTCAATGAACAAATCATGCCTTTCctcaatt
aaataaaatttattttacatCAGACTTATTAAAAATATAGTCTGATAAAA
TGACCCCAAAAGAGTTTATGGAAAGTAGCATTTTTGAAATTGGGTTTTGG
CATTACTGATCTTTCAGACTCATGATTTTTTTAGTTCATAATTTTTTGAT
TAATAATTtgtgtattcaatttttttgcattttcttaatgatttatTATA
ccttaatatatttttttcactcTCACCCAAGCTCATGTAAATTACCTCAT
ATGATTTCaagaatcaaaataaaaatgacattttttgatATGAGAAACGA
ACACGTTTATCCAGATtacatttttcagttttgaatGATCCGAGGGTACT
GGAAAGGGATATATCTGCCTATATTTACGTAAGTCGATCAGTTTAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_253:764967..777506+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055424 ID=TCONS_00055424|Name=TCONS_00055424|organism=Clytia hemisphaerica|type=transcript|length=12540bp|location=Sequence derived from alignment at scaffold_253:764967..777506+ (Clytia hemisphaerica)
AAACGATTAGCCTAGTTTCTTAAGAATAATGTTTTCGGGCTAGTTAtagt
cgaaaacgaaagtgcttttTGGTCACAAGATCtctaaaaattttctctgc
aacCCAACACAAACTCAAACTGCAGCGCTGCAAACACCCACTCAAAGTCA
AAATGGCAAAGGTATTTggtgttttatgtttttttcatttggtAGTTGGC
ACTCTCTCTTTGGCTACAAATGTTACTGTTCCTGTTGTGATCTGGCATGG
GATGGGTAAGAAAGNGGCTACAAATGTTACTGTTCCTGTTGTGATCTGGC
ATGGGATGGgtaagaaagtttttttctcatttttatttattcattcatca
ttcatttttttcaataaaccGATTCTACAAAATCCAGCCATGCACTATCT
TCAAGCAAACCTCAATCAAGCTGCCTGTTCCTAATTGACATAAATTTTAc
cctcaaaacaaaaaactatgCACATAGGGTCCAGTCTGGGAAGAAGAAGG
AGGGAAATGTTACGCGCCAGACAGAGCTGCGCCAACTTAACCAGACGCCC
gtgctcgataggatcgatcatcggaacggctcgatgacggatcgatatgt
gatcgatggattacttaatgATCCGGATAGTAGATCGATataggatcgat
actcaaggtttttttaagcttatgattagttatcgattatttatcgatct
atcatcacGTGCGTTTGCGGCTGAAATGCGAACTTTTGACGCGAAAAAAT
GACCTACCTTTACTAAATGCGTCATATCTCAAAATCCAAACAAGCACATT
CCCTGAAATTTTCAGATGTTTAGCCTGTGTACTTTTTCCGCTAGACTGGA
TTAAAGgctaaattttcactttttttaacaaaatttcgaactttttttgt
caaatatctcaaaaacGGCTTAGGATTTTTGAATTCTGTAAAAAGCATGT
GATTCTCATGTTGATTCTACacattccctgaaaatttcagatgttTAGCC
TGTGTACTTTTTCCGCTAGACTGGATTAAAGgctaaattttcactttttt
tacagATATTTTACGACTTTTCGGCCAAATATCTCTGGAACCAATTAgga
tttttaaattctgaaaaaatgaaGTAATAGATTTGTAAATTCTGCACATT
CCCTGAAAATCTACCTACATATGTACTTTTTCTGCTAGACTAGATTAGAG
GCTGAATTTTGAACGAAATGACCAAAATGTTTTCCAGAGTTAACTATTTC
AGAAAAAGATAAACCAGGTCGAAAAAGATTTAGGTTAGGAAGAAATGGGA
AGCATCATTTAGAAATattataccttaaaggaagaaattttggcgggaat
ttaatttggcggatggccgaaaaagtttcttcagagggaatttaatttgg
cggatggccgagaaacttaaatttggcgggaatttaatttgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGCATTTT
GGaatagaaaaatgattttgaacgAATTATTTACATATATACAAATTATA
ACACAACGATAATAAATACTCCCCTCTGGGTGGTGAATGGCAACAGTTGA
ACAGTTTGAACAGTTTGAACAATTTGAACAAATAATCTAAGGATAAAATG
AAATCGATTAGTAAAGTCACACCTCAAACTGGCATCTTTGACATTTCCCT
GCCTTCAAAAAAGCCCTTGGTTTACAGACAGGGCATAGTCTACTTTTAGG
GATTAACAGAGACCTATCTGCTTTTCCGCGCAATTCTTGGGCCTCATGCA
AAAGCATGAGTTGAAGTTTTTGATCCCGTACACCGCAAAGACGTCGTAAC
TCTTGGTTGATCAAATTGTGAAGGCTTTCTCCTTCCTCTTCGCTATACCT
CCCAATAGTTTTATGATCTTTCAAAAACTGAGGGACAGACCACACAAATT
CATGTATTTTTCTCATGATATTTTCGTCTTGAAAATATACTGAAAAATCA
CCGAATTCGTAGCAGCTTATGGTAACAAAATCAATCTCACTCTGTGTCAA
TTCTCTTTTTGTAAAGAGGAGTGGCTTGATATTTGCGAAGATTTCAAAGA
ACCTTACAAGTCTCGGTCGCATGCTATGATGGTTGAGAATAGAGCAAAGT
AAAACATGATTATCAAGAACATGCTTACAATGATTCCCAACAAAAGCATT
GTCAAAGTATGCCTGCCGATCCACATTAATGTCCTTTAAAAGTCCATCAA
GCTTCTTCTCGGTAGGTCCCTTAACTTTAGCAACCGTTTCCTCGAGATGA
GCGTAGGCATGACAGGCTTTCTGATATGCAGCTTCTTCTATGCTTAAGTC
ATTATTTAAACCCTCAACCGTTTTCCTGATGAAACCAGGTAGGTCATCAA
GGGTAAAATTATGACACTTCAAACAGATGTAATGTACATCAGCTTGGTCC
GCATAAACTCTTTGCTCGGATGTAGGAATCAAATCACAGATACAATGAAT
CCATTTTCCACACTGACCACATAGAACCCAATTCAAATTAGAGTCAAATA
CAGACGCAATACACTTGAGACCTGTACATGATCGAAATTTCTTGTCAGCC
CTTTTGCGCGAATTGTCAGAACACTTAGAAATCGCATCAAGCTCGTCTTT
GTTGCCGGCTATAGCCTCTTCCAAACGCTCTTTTGAATTGTACAGGTCAA
CCAAATCAGAGGCCACGCTGCAACGCTTTTCGTCAAGTGTATTTTTCGCT
TCCTTTAATTTCGCTAAATTTTCCTCATGTGTCTTCAGGATTTGTGCGTG
GCTAGGTTTTTTGAGTTCCAAGCAATCAATTTCTCGGTAAGCACCTGTCA
GCAGATTGAAAAGCCTCAACACAATACCCAACATAATGTGAAGAACAGGG
GGCACAACATTCCTAAGAGTCAAAATGGGGAAAATCCTATGGTTACAAAC
ACTAGCATGAAACCTTCCTAACTTCCTCAAATCACCTTTCGCTCTATCAT
CAAGCAAATTCCCAGCGTAGAAGGCGTCTAAATCATCAATTTCCCTAAGG
GAAATTTCTTTACAATGCAAAGGTGAGTGGGGTTTTCCACCATGCTCTCT
GAGGTGAGCCAGAGTAACATCCCATTTAGCACTGGGGAAAGTGCTCGATG
AACCTTGGTGACCAAGGCAGTCATCTTGAAAATGGAAATCACCCCCCAAC
AACACCTTCACAGGGTGCCCATCTAGCCTGAATTCTTCCCTCTGAATCTC
AATCAGCTGATCTCTAAAAGGAAACAAAATGACCGACATGTTCTCATAAG
AATCCGCTGCACTATACATCGAAAAAATGTGGACATCATAAACAGAAAGT
TTTGATTGGCCACAGATTACCTCAAAATGGAATTTCATCATACTTCCTCC
CTTGTCCCCGGAGAACAGCAGATCAATTCTACGTTGAGCATCATCTGGAC
CAATCAAACCTTTCTGTTTATATTCCAGTAGAACACTCTGCAAGAAGGCT
ATAAGATCTCTACACCTGAGGACATTAACCTTCCCACGTGCCTTCTCCGT
ACCAAGTTTCATAAGAGTTTCAGCAGTAACATAAAATCCTGCATCCTTCA
GATGAGACAGACGGTTGGATTGAACAGCGCGAAGTTTGCCCTCAGATGGA
AAAATATTATACCCAAGACACGACAACAACACAATGCGAAGATTACGAAA
GTCCGACATCGAGAAACGAAAAACAGATTTCACATCCGCAGCCTGCTCAG
GGGACAACTTAGGGAAAAAATCTCTGGGGAGGACACCAACACAACTCCTA
AAAAAACTGGGGTTTAGCTTCAAAAATTTCACCAACAAACGACTCATTTC
CTTAACATCAAAAGACACTTTGCTCGTCACGAAACTAAAACCACCTGACA
ACGaagaaagcaaaagaaaaaaaaaagttgctcTACTTGACAACTGCTTT
TCAGTTACAGCCGAGTTATTGATTTTGCTTGTCACATTTGCATAAATTGC
CGGCTGATGGTTAGATTTTAATTTCCCGGATTGGctgttgaaaaaatatt
ttgtgccTTCAAACATCCGAGAATCCTGATCCAACACTTTTGTGATCGTG
ATGAAACCTAGGCCCTTGTCAACTTCAGCTGCAGCAATGTTACCATTGTT
ACCGACTACAGACTGAGAGTTATTCTGTGTCCCAAGGCGCGCCCTCTTTT
CCGCCTCTTGCAAAAGCTTACCCTTCAGACCAGCAATAGCTTTGGTCTTG
GAAGAGCAATCCGAATTCAATTCATTGACCGTTTTAGTTAACGAGTCAAC
TTTTTCAGTCAACAAAATGCATTTGGAATGCTCTTCTTTCAAACGCTCTT
CaaaatcaagtttttgtttctttaatcTTTTCTCCATGGTCTCAATTTGG
AGTTTGTCGAGCTCGTTTTGAGAAGGAGGGAGGCCTGAAACAGGAGTAAG
ATCTGCTTTTGTGAAGAAAGGCTTGACCCAATAAACACTGAAAGAAATAA
GATCTTCTCCAAACTCCACATCCTTGCTAGGGTTTTTATGAGAAAGAGCT
CTTTGTTTAACAACCTTGGTAACTAGGCGGTTAAACTTTCTGCAATCCGG
TAGACTAGACCCTATGGGaagcaaaaacttcaaaaattttaaaacactgC
TCTTACTGGGAAACAACTTACAAAGAGTGTAGACGATTTGGATAGTGAGA
AGGGAAGGATCACTTATTCTGACAGTCGTATGCACTTTAGACTCGTCTAA
CCACTCATCTTTCCAGCCAATACCACTTAAAGACTCTTTATCCTCAGAAG
AAACCTCAGCCATGActggaaagaaaaaattcaaaaggggGTTAAAAGTT
AAAAGAACGTAAAATGAAAACTTATCTTGTCTCTTCGAAGGCTTGATTCA
AAAGAACTTTCCCGAGCGTGCTATCAGCTGATATTATTTCGCGCGGAAAT
AAACCAATCAGCGCGAAGGTCAAAAATCAATTGGCCAATCAGCACGCGAG
AACGccgaaattcttttttgaataaACTCGGACTCAGACTGCCGTTATGC
ACAACAAACGCGGTCGAGAGCGTGTAACGGTTCGGTGAAATCGTTCTCAA
AGTGGggtcttttctattgtttacAGGAAATAAAAGAAGAGATATTCTTA
ccttttctttggttttttaaacaaaattatgTCCAAAGATTCATCTTACG
AAGAGGGATACTGAAGAATGTGTCCAGCGGCCCAGTGCAAGCAAAGAAAG
TACAGTTTTTGGAATAACTTTACAAGTTGTACTTGCCCTTTGATCCCCTT
CTGCAAATTACATCTTCAACCATCTTTCTTCAAggtctaaaaatttcaaa
acaaatagtCAAGGCTACAAATTCCTGTCGACGATGGAAGCAACCTCGGT
ATAACGAATTTCGACAACTTTGGCAATCGACtgtaaattttttaacaaaa
gtaTGACCTTGCCGTTTCGAAATTATGAAAGAACAGCTCTTCTTTGGtaa
tatactttttatttgaaagtaaaagGTTATTTATTTGTAGAGTAGAAAAG
AAAAGTctgagggtcatttttcaaaaaaattttgccaaaatcgattttcg
catttcgccatttttaccttacgcaaacgcacgtgtcatcaatcttttat
cgatcttatcgaccctatcgactcatactcgattaaagatcgataacaaa
tcgattaacgatcgatgacgaatcggtatactcaattgaaatactagctc
gataatggatcaacgaaggatcgatactcaagactttttaatgactgaat
cttccatcgatctcctatccggatcgttaagtaatccatcgatcacatat
tgatccgtcatcgagccgttccgatgatcgatcctatcgagcgcgggggt
ctggacTTAACTGGGAAAAGTTGAATGCAGCAGATCTCAAACCTCAAATC
TATGCCGAGGATATCCGGCCCACAAGCCACAATTTCCAGACTGGCATAGG
GTCCACTCCCCCCTCCCAGAAATTTGGGGAtacctcaaaaaaaaaaagtt
agtcacacttaggaaatcaagctttcagaaaaaaacaacatcagtcatca
gtcatctacaggatgtattagAAACAACATAGCAACacgatttttccaat
ttttaatattttttttcaaaacctaccctatcttgtagagctttgaaaaa
gtaagaaaatgaggggtcataggcctcggCAGAGGATAattggttgtaaa
gatattcaaattttagtgtcgaaaatttgactaaaaatgtcaaaaaaaag
gttaggaaaatagcttggaaaaatttgaaaaatgtgtcaaaaaagataaa
aaattttttttccagtcatgcttctttaaTTTAGCATAtcactttttcta
gtgtagctagagacctgaaatttggagggaggaTTCTTTGATGATATTAG
ACTATCATCatacagttagtcacactaggaaatttagctttcagaaaaaa
caacatcagtcatctacaggatgtatttgcaacaacaaggatgagagtta
cttgaatcaagttcgcaagacaattaattaaaacttgaaagtttgaaaca
aaataaaacgtgcagcagccaaaatcaaccaaccaaaatttgtcattcaa
ttcaaatttgttcatctatggctcaaattttgggcaatttctcacatagc
ttttgaaaatgttaatttcattaaaaagctctgggttattttttcataaa
tccctttagaagttttgcgacgcatttttttgcttgcgagtcaagtaaac
gatatagcgcttttgcaCTATTAATATTTGATACGCATTtgggcgggacg
ctagtgtgactaactgttaaaAAAGTCAGGTACCTGgaagtattcttaaa
tttaggggGTACCTGATATGTTTGAGGGTACCTACATTTTCACAAAGGGG
GGCGCAGGCTGTTGTTtgtgtttaaaattttattgaagcccttgaaaccc
ttgaaaaatcaatattattttgGGGACCCTTGAGGTGCAAGATTTATACC
CTTGAAAGGATTCAACCTCGAGAGatgaaaattcaacctttctccTATTG
TCAACAGATTTCCTTGAAATCCTTTAAAACTATCAAAGATCAACTAAAAA
CCCTAGAAACTCTTGAAAGTTTGCGGTAAAAAGAAACCTTAAAACCCtgg
aaaattagtcaaaaattacccttgaaacccttgaatttgttgaaaaagaa
ataatgcCCACCATGGAAGTATTTTcccaggaatgacaaaagagcagaaa
atcctttatttaatttttggacctacctccgggtgccccggtggaggttc
tataaattaatctgttcgtccgtttgtccgttcgttcgtccgtctgttac
cagcttttctcaggattggctcattagttttttgtgCAAAtcggcaatgc
ccagaacgtgacggagcctgatttttaagaaaaaatttatttgggtaaat
ttgggccaaaaactacctaaaaatggggttttttggactttgtgcaaaat
cctgtcattacttttttctgattttttgtacaaagatggagggtaagatt
ctctaaagaatgtctgaagtggtttttcccgggaaattcttattcgcctt
aaaagacggattttcgtattttggggagattccctttaaccaaataagaa
aatatagcttttctcaatgttgactcataattttttctgattttttctga
ttttttgcacaatgatgcaaaatggcaatacccaaaatgtgacggagcca
gatttttaaggaaaattattttgggcaaatttgggccaaaaacagcttaa
aaggttttttgggcctgaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNctgaatggtttaagtgattttcgtatttggggaaattccttttt
accattttacattattcaacacacgagctttatttttccattctgaattt
ttgtcacttttttcttattttcatctgatgttaatcattaggtaggtcca
ttcagcatgttgcttgttaacaATAAAAAAGGGGGTAACTCAAAGTTTGG
GGGCtactttagaattctaaaaattttggggtacCAAAATGATTGGGGTA
CCTAAATTTTTTGGGGGTACCTGAAGCCTGGAGGACCCTATGATGCACAG
GTCCAAAcaggaaatatttgaagactTTGAGCTATCAACAAGGTGTtact
aaatcattctctttatattctttctatcatttcttagaaaaaatggCTGA
TTGTGGGTGAAAATGACATCCCACAGAATCAGTTTGTAGTCACTAAATTA
ACAAAGTTTTAGTTTGGATTCCCATAGGCTACAATTAGAAATGCCCCTTA
CCCACAAAATTGATCCCTTTTTAAATGCAGTGTTCAAAGCAGCAGGAAAG
TTCTTCTGTCTCAGTTAAGTTGATAAAAAGCTTTTTCTACTCAAAGTTTA
GCTAAATTCAATAAGATATTATATTAATCTATTTAATAGGCatctagcaa
aaggtctatatcTTGTGACCAAagtatatatatggtgaagatcagagatc
tgacctcaaggggagaaaataaaaatgaaacataaaaagaaactaatatt
tttatagttATAcggtttttctatttttgttatGACTGATCATGAATTTT
TTCCTACATCAGGTGATTCTTGCTGCAATCCTCTCAGTATGGGAAACATA
AAAAAGATGGTTGAGAAAAAGATACCTGGTGTCTATGTTAGATCATTGAT
GATTGGAAACAGTGTAGTGGAGGTAAATATGTGAAAATATAATGTTCTTT
TAGTGACTTGTAAGCAGGATTTGCTCCACAAAACTTGCCaattaatttat
gaaaaagtgacCTGGTAGCACTGAATTTCTAAGCTGTGACTGAATGTCGA
TAAAAAATAattctgatttttatttttaccagTATTTATTTGCACAATTT
AAAAGTTCCTCTTTTAGGGCATTGTTTTTAAGTTGAATTATGatttttat
taaagaaaattgtattttgaataaaatcttgaatatgcttgcttcatttt
gtttttaaaacagtGTATTCTTAcgaaacaaaatcattttttacttACAG
GATACTGAGAATGGCTTTTTAATGGGTGGAGACGAGCAAGTGCAGCAAGT
TTGTGACAAGCTTGCCTCTgatgagaaattgaaaaatggcTATCATGCTA
TGGGATTCTCTCAAGGAGGACAATTTCTGTATGTAATTATAATGTCAATA
TTAACCAAATCTTTTGATGACAGAGCTATCGTAGTTGTGATATTTTTCAT
GGTATATGGTTAATGCTAATAGGCTGTTGAAACAATTGCTGCAGTGCAAT
GGTTCATTGCTGATTAATAATGGacaatcaataattttttatttgagctC
TGATTTTCAATTGATTATTGTGACCTGATAATGAGTCAGGAGGTTCTATG
AAACTTTACACTTCTAAATGAAATCCTCCTTCAATTCAGTAACTCATTCT
ATATTTCAGGCGAGCAGTTGCCCAGAGATGTCCAAATCCAccaatgaaaa
atttaatctcTTTTGGAGGACAGCATCAAGGTGTGACCTGTTATTCAAGT
TTCTTCAAATCGCTTcgaattttaaatcaaaataatagGAAAATAATGAA
TAGTTACTGTAGTAGAAACAATAATTCAAATGGGTTTAATTCATGAAATT
TGGTGCAGAAGTTTAATTTTAAACAACTGACAACGTCATCAAGTAGCTTA
ACAAAAAAAGTCTTTTACTCGTTTTTTAGGTGTGTATGGATTTCCAAGAT
GTCCTGGTGAAGCATCTATCCTTTGTGATTACATGAGAAAACTCTTGAAC
CTTGGTGCATACACATCTTACGTACAAAAACATTTGGTTCAAGCTCAATA
CTGGCACGATCCTTTGAATGAAGCTGAATATAGAAATGTCTCCTTGTTTT
TGGCTGATATCAATCAAGAAAAGgtatttatatttttgttattcaaaatg
agtttttttttccTCTCGCACCAAGACTCAATCACTTTTGAGAGGAGCAT
ACTCATCATTACATAAAGCGTGTCCAGATTGTTTTCTCTTAACGCCCTGT
GGTGTaaagtttctatttttttaaacaataaacaacttattaaaaaatat
ttttcaacagAAAGTCAATCCAGATTACaaaacaaatttgatgaaattgc
AGAACTTTGTAATGGTTAAATTCTCTAAAGATACCATGGTTGATCCAAGA
GACTCAGAGGTATAGAGATTTATTTACTGCATTAATGATCTACTTTAATC
AAACCAGGAATCAGGCTTTTGgtttggaaaactttttatagGGGGTTTCT
GTAGATTCCGCAATTCGGCCAATTTTGCCCCagtttccgtcaaaccgtct
ttaAAGCAATCAAAATTCTGCCACCGAAAATTCTTCTGAAATTCAAGGTT
TTGTGTAAAAAATTCTgggtattttaaatatttttcgccAACTCCTAAAT
TCTGCAAAACTTTTTACTAAATTctgtttttccgcactaaaatagTTCAA
AATTCCGACTCCGGCAGGGGAcccaatttccgaaattcctTCGAAAATTT
CGTCAAATTCAGCTACCCTGTTTGACAAAAGGGCttattccgctcctccg
ccaacaaTGAAATCCCCTCCTTTATATCGAATCATTTATCTGTAAAAGAA
TACTTTGAAGCTCTCTTATAAAATccgaatttttgaatttttacttaaaa
gtcatcataaaaataacaatatgaAATCTAACTATGGGGTATACTATTGT
CGTGATTAGGAATAAAGTTAGAAGGTGGTCATTGATATGTTAAGCATCCG
ACTCTCTTTCTTTTCAGTGGTTTGGATTTTACAAGCCTGGTCAAGCAAAA
GAAGTTTATAAATTGCAAGAAAGTCCTCTTTACACCGAGGTATTTATATC
CATATCGTTTTCTTTCACTCTCGCCCATGTCTGACTAAGGATCAGCGTCC
TTTGAGTAGAAGGACCTGAAGATTTTACAGTTGAAGGTAATTGATTGAAT
Ctctggtacctaatagccggggggtttggaaaaagtttcaaaacttaata
ggtgggggagggggttggaataaaaatgtcctggctggaaatttttcgaa
aaggaggctagtacagcagaattagggaaaaagaggggaactttcaaaaa
aatgttcccaaaaatcaataaacagagGGGGGTtgaaataagaatgtcct
gggtggaaaatttttagcccccaggctattaggtacccgagagtaggtat
AGATGGCTTTAAGGTAAGAACAAAGGTTTAATTCAAACGGCTgatatttt
ctattttatttccCCCCATAGGATCGATTAGGATTGAAAGAAATGGATGC
AGCTGGAAAACTTCATTTCTTGACCGCAGAAGGTAATCATCTTCAGTTCT
CACAAGATTTCTTCAATGAACAAATCATGCCTTTCctcaattaaataaaa
tttattttacatCAGACTTATTAAAAATATAGTCTGATAAAATGACCCCA
AAAGAGTTTATGGAAAGTAGCATTTTTGAAATTGGGTTTTGGCATTACTG
ATCTTTCAGACTCATGATTTTTTTAGTTCATAATTTTTTGATTAATAATT
tgtgtattcaatttttttgcattttcttaatgatttatTATAccttaata
tatttttttcactcTCACCCAAGCTCATGTAAATTACCTCATATGATTTC
aagaatcaaaataaaaatgacattttttgatATGAGAAACGAACACGTTT
ATCCAGATtacatttttcagttttgaatGATCCGAGGGTACTGGAAAGGG
ATATATCTGCCTATATTTACGTAAGTCGATCAGTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034879XLOC_034879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055424-exon-scaffold_253-1491911889:764967..765221TCONS_00055424-exon-scaffold_253-1491911889:764967..765221Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:764967..765221TCONS_00055424-exon-scaffold_253-1510915933:764967..765221Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:764967..765221TCONS_00055424-exon-scaffold_253-1575043694:764967..765221Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:774279..774388TCONS_00055424-exon-scaffold_253-1491911889:774279..774388Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:774279..774388TCONS_00055424-exon-scaffold_253-1510915933:774279..774388Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:774279..774388TCONS_00055424-exon-scaffold_253-1575043694:774279..774388Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:774717..774844TCONS_00055424-exon-scaffold_253-1491911889:774717..774844Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:774717..774844TCONS_00055424-exon-scaffold_253-1510915933:774717..774844Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:774717..774844TCONS_00055424-exon-scaffold_253-1575043694:774717..774844Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:775126..775196TCONS_00055424-exon-scaffold_253-1491911889:775126..775196Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:775126..775196TCONS_00055424-exon-scaffold_253-1510915933:775126..775196Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:775126..775196TCONS_00055424-exon-scaffold_253-1575043694:775126..775196Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:775396..775589TCONS_00055424-exon-scaffold_253-1491911889:775396..775589Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:775396..775589TCONS_00055424-exon-scaffold_253-1510915933:775396..775589Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:775396..775589TCONS_00055424-exon-scaffold_253-1575043694:775396..775589Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:775777..775875TCONS_00055424-exon-scaffold_253-1491911889:775777..775875Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:775777..775875TCONS_00055424-exon-scaffold_253-1510915933:775777..775875Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:775777..775875TCONS_00055424-exon-scaffold_253-1575043694:775777..775875Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:776484..776555TCONS_00055424-exon-scaffold_253-1491911889:776484..776555Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:776484..776555TCONS_00055424-exon-scaffold_253-1510915933:776484..776555Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:776484..776555TCONS_00055424-exon-scaffold_253-1575043694:776484..776555Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1491911889:776988..777506TCONS_00055424-exon-scaffold_253-1491911889:776988..777506Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1510915933:776988..777506TCONS_00055424-exon-scaffold_253-1510915933:776988..777506Clytia hemisphaericaexon
TCONS_00055424-exon-scaffold_253-1575043694:776988..777506TCONS_00055424-exon-scaffold_253-1575043694:776988..777506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:764967..777506 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
176.117	186.516	103.77	89.1668	43.2021	34.1083	34.7241	35.6673	131.257	93.3212	147.234	150.456	137.443	161.006	188.514	196.436	89.066	94.5994	177.594	192.928	106.819	96.5664	163.391	169.281	92.3876	82.7923	81.3232	140.397	360.546	349.728
Blast
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BLAST of TCONS_00055424 vs. Swiss-Prot (Human)
Match: PPT1 (Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.052e-138
Identity = 186/273 (68.13%), Postives = 221/273 (80.95%), Query Frame = 3 
Query:  228 VPVVIWHGMGDSCCNPLSMGNIKKMVEKKIPGVYVRSLMIGNSVVEDTENGFLMGGDEQVQQVCDKLASDEKLKNGYHAMGFSQGGQFLRAVAQRCPNPPMKNLISFGGQHQGVYGFPRCPGEASILCDYMRKLLNLGAYTSYVQKHLVQAQYWHDPLNEAEYRNVSLFLADINQEKKVNPDYKTNLMKLQNFVMVKFSKDTMVDPRDSEWFGFYKPGQAKEVYKLQESPLYTEDRLGLKEMDAAGKLHFLTAEGNHLQFSQDFFNEQIMPFL 1046
            +P+VIWHGMGDSCCNPLSMG IKKMVEKKIPG+YV SL IG +++ED EN F +  + QV  VC  LA D KL+ GY+AMGFSQGGQFLRAVAQRCP+PPM NLIS GGQHQGV+G PRCPGE+S +CD++RK LN GAY+  VQ+ LVQA+YWHDP+ E  YRN S+FLADINQE+ +N  YK NLM L+ FVMVKF  D++VDP DSEWFGFY+ GQAKE   LQE+ LYT+DRLGLKEMD AG+L FL  EG+HLQ S+++F   I+PFL
Sbjct:   33 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
The following BLAST results are available for this feature:
BLAST of TCONS_00055424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPT11.052e-13868.13Palmitoyl-protein thioesterase 1 OS=Homo sapiens G... [more]
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