|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055450 ID=TCONS_00055450|Name=TCONS_00055450|organism=Clytia hemisphaerica|type=transcript|length=1244bp
aatttttttatcaaaacccAAAAGTTGaagtaaaCTCCTTCTTTTTAACT
ACACGTTTCATTACAGATATGAGAAACTTTCTTCTCGGTTTAAATACTTT
AAAGATAATACGTTCAAAATTATAAGTGCATATAAATAAAAGTCAAACTT
TATCCTGACATAAGCTTTATAGTTGGTtgtgaaaataatttcattGCACT
TTGGTTGTTTTCCTCCTTTTAACGTGATTgtgatgtttttgtttcttatT
CTTCCTTCTTGCTCGTCTCATTCCTCCACGTGAACTTGATGATGACTTTC
TGTCGCTGCTTCTGTACTTGAGAACTATTTCGTGCAAGTTCATTGGAAAG
CATGGTTTGTGTGCTTAAAAAAAAGatgacattgaaaaaaattgatatgc
CTTAGGATGAGTGAACTTTTGTTTATGTATCCCATTCCCGATCTCGTACA
ACAGAGCCACCTTTTGGTTACTGATGGACAtttcagaatcacaaaatact
GTAGcaaacccccttctcacagacccaccactggaaaacttggccaaaat
atcgtccccggtgaaaaattatcctccaatttctgtccccactgaaaata
atcaaataaaccaatcctcactgcgaAATATTGACTATTTTTCCTATCCC
CACTgagttttctgacttgaaaataaaagaattaaaatccCCATTCATAA
AGAATTTGAGAATATCGATCCCTATCgaatttcagtccgttattttatCT
CCACTAGCTACaagaatcctaccgggtctgtgagaagggtgttGTAGCAG
TTAGAGTAAGGATCTAGGCTTGAGATTTTCCCACTCCtagtttttcattt
ctttcacttCTCCTCTATTAATTACGTGTAACACAAGGTCTGTTTTAAAA
AACATGAACACTTTGCAAGAAAGCCTTTGCATGCAAGGATATATGCatca
atatatttttaaaatatttgaaaaactcAAGATATCCCATTTGATCTTCG
AGCTTTGTGGTTCGTGGTTCGCgttatcaaaaaatattaatCCATCTGGG
AAGAAAAACAGCGTTTCAAGGAGGAGTTTTTGTTCCGTTTACAGCAAATA
GGGGGGCCCCAAATATTCAAAGCAGAAATTGTGAatgaaaatattcattt
ttctaaaCATATGGTCTTCCCAGGTATCCATTGGACTTCAAAGAAATACA
AGAATCCTACTAAACATTGTTCCACCAAACTGATTTCTAAACTA Run BLAST on NCBI transcript from alignment at scaffold_253:1142942..1144622+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055450 ID=TCONS_00055450|Name=TCONS_00055450|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at scaffold_253:1142942..1144622+ (Clytia hemisphaerica)
aatttttttatcaaaacccAAAAGTTGaagtaaagtctgtctcgaaataa
tttgcagctggagaaaaaaatggctgtaacttttgatagaattcgaatca
agttgcggttttgtgctcgttaaaaagatNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaaaaatgaagaagaaaaaaatcaacttcttgtagaaatg
tggtataattatcattttcacaggagtgattcttcaatcttagatcatta
tcactgtcaaaaattttttcaaaaatattcattcaatcaaaagatatcaa
acaaaatttattgactttAAGCTCCTTCTTTTTAACTACACGTTTCATTA
CAGATATGAGAAACTTTCTTCTCGGTTTAAATACTTTAAAGATAATACGT
TCAAAATTATAAGTGCATATAAATAAAAGTCAAACTTTATCCTGACATAA
GCTTTATAGTTGGTtgtgaaaataatttcattGCACTTTGGTTGTTTTCC
TCCTTTTAACGTGATTgtgatgtttttgtttcttatTCTTCCTTCTTGCT
CGTCTCATTCCTCCACGTGAACTTGATGATGACTTTCTGTCGCTGCTTCT
GTACTTGAGAACTATTTCGTGCAAGTTCATTGGAAAGCATGGTTTGTGTG
CTTAAAAAAAAGatgacattgaaaaaaattgatatgcCTTAGGATGAGTG
AACTTTTGTTTATGTATCCCATTCCCGATCTCGTACAACAGAGCCACCTT
TTGGTTACTGATGGACAtttcagaatcacaaaatactGTAGcaaaccccc
ttctcacagacccaccactggaaaacttggccaaaatatcgtccccggtg
aaaaattatcctccaatttctgtccccactgaaaataatcaaataaacca
atcctcactgcgaAATATTGACTATTTTTCCTATCCCCACTgagttttct
gacttgaaaataaaagaattaaaatccCCATTCATAAAGAATTTGAGAAT
ATCGATCCCTATCgaatttcagtccgttattttatCTCCACTAGCTACaa
gaatcctaccgggtctgtgagaagggtgttGTAGCAGTTAGAGTAAGGAT
CTAGGCTTGAGATTTTCCCACTCCtagtttttcatttctttcacttCTCC
TCTATTAATTACGTGTAACACAAGGTCTGTTTTAAAAAACATGAACACTT
TGCAAGAAAGCCTTTGCATGCAAGGATATATGCatcaatatatttttaaa
atatttgaaaaactcAAGATATCCCATTTGATCTTCGAGCTTTGTGGTTC
GTGGTTCGCgttatcaaaaaatattaatCCATCTGGGAAGAAAAACAGCG
TTTCAAGGAGGAGTTTTTGTTCCGTTTACAGCAAATAGGGGGGCCCCAAA
TATTCAAAGCAGAAATTGTGAatgaaaatattcatttttctaaaCATATG
GTCTTCCCAGGTATCCATTGGACTTCAAAGAAATACAAGAATCCTACTAA
ACATTGTTCCACCAAACTGATTTCTAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055450-exon-scaffold_253-1491911889:1142942..1142975 | TCONS_00055450-exon-scaffold_253-1491911889:1142942..1142975 | Clytia hemisphaerica | exon |
| TCONS_00055450-exon-scaffold_253-1510915933:1142942..1142975 | TCONS_00055450-exon-scaffold_253-1510915933:1142942..1142975 | Clytia hemisphaerica | exon |
| TCONS_00055450-exon-scaffold_253-1575043694:1142942..1142975 | TCONS_00055450-exon-scaffold_253-1575043694:1142942..1142975 | Clytia hemisphaerica | exon |
| TCONS_00055450-exon-scaffold_253-1491911889:1143413..1144622 | TCONS_00055450-exon-scaffold_253-1491911889:1143413..1144622 | Clytia hemisphaerica | exon |
| TCONS_00055450-exon-scaffold_253-1510915933:1143413..1144622 | TCONS_00055450-exon-scaffold_253-1510915933:1143413..1144622 | Clytia hemisphaerica | exon |
| TCONS_00055450-exon-scaffold_253-1575043694:1143413..1144622 | TCONS_00055450-exon-scaffold_253-1575043694:1143413..1144622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:1142942..1144622 + |
Blast
The following BLAST results are available for this feature:
|
