TCONS_00055495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055495
Unique NameTCONS_00055495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055495 ID=TCONS_00055495|Name=TCONS_00055495|organism=Clytia hemisphaerica|type=transcript|length=2007bp
ggtttcgttggacagaataactctactttagttcttataatctatatctt
gactgatttttgctatcaaggattggtaatcgaaggaggccgatttgaaa
gaaatttctaaagagttttatgacttctctggctattacagaaaagttgt
tactccatctatatttttattacctccacgGTATACCATCAAACGTATTC
TGTTCGTAAATAGATTCTGAATCATAATCTTTTATAActgaatctttttt
ctttcaagagaacaaaagaaaatgataGAAAAAATAATGGCTATTTGGTA
TTGAATCTTCATGAAAATTAGAAAAGAAAGGTTTCAGTCAGAAGTGAGAT
GTAGCTGTTCTTTCAAGATGGATGTGGTTATTTCTCTATGTTACTTCAAG
AATTGTCTTCCACTCCACGGCTACATCGGCTCTGTTTTTCCTGCCCAAGA
AATGTGCTTCATCTTCGTTTGATAGACCGTGCTCTCAAGTGGTATTTGTA
AAGAAACTTTGATATTGAAAGGCCTCGTAGCTGCAAGAAGAGCTCTACAC
AGCTTCGACTTTTTCGCATGCAACCAGCAAACAGGATTAAACAAAATCTT
CACAACACCCACGCAGATAAAGAATCGTTGCAAATCATTTTTATCTAACA
AGTAATTAATTACGAAGAGAATTGGTATAAAAAGAGAGATGGAGAGATTG
TTGGAACTCATTACGAAGAAAAGCATCGACGAGGATCTAACCACGATCTT
AACCAACATGTATAGCATCTCATCTATCGATTTCATCGAAGTTGGCAAAT
GGTTTTTGTTCTTGAACATACCAGCCATTGTTTTCTTATTCATTGTGAAG
AATCCAGTGGTCTTCTTAAAACTCTTTCTAAGATGTCGAATCTTTCAACT
TGGTTTTTTTAAACGACAAATCGCCGTTGGTGAGCAACTCTTCTCTTACA
TTGAACGCGGAAATTCATCTTCCAAGAAAACATCCCTTCTCTTCATCCAC
GGTTACTCAAACTCCAAAGAAATCTTTCTTGACGTCATTGCTTGGTTGCC
ACGTGACCTTCATGTCATTTCAGTGGATTTGCCTGGTCATGGAGAAAGCA
TGTGGGATGAGAAGGACCAAGTCAGCATCACCAATTACGTTGACAAAATT
CACCAGtttgtGCAAGCAGTTGGATTAAACAAAAAGAAGTTTCACATCGT
TGGTGAATCCATGGGCGGGCATATTGCGGGCGTTTATTCTGCCACACACC
CTTCATCAATCGAGAAGACCACCCTGATGTGTCCACATGGTATCAAGTTT
GatcaaatggaaaaaatgaaagcTGAATACGAACGCTCTGGGCATTGTAT
CTTATTACCGGATAGTCTGCAAACTGTCCGTGAAATGTTCGAATGTGTCC
TTCACAAGAAATTTCCCTTCCCTGATTTCGTATTGAATGGTATTTTACAA
ATGAGATTGCAAAATGACGACTTCAACAAAAAACTGTTGTTACGTTTGGT
GTCGTCTGAAGACGAAGATCTCTTGGAACGTTCATTACACAACATACGAT
CACCCTGCACACTCCTTTGGGGAAAACAGGATAAGATCTTGGACGTATCT
TGCGCAGATAAGATCAAATCCAACCTCCCCAACCTCAAAAAGACGGTGAT
TTTTGACGATGCGGGACATGTCTTGTCAATTGACTGTCCGCGAAAAGTGG
CTAACAATTTAATGGAATGTTAAAAACCTAACGACCCTCTGATGAGGTGA
TGAAAGTCAATACATTTTTAACAGACGGATGAGCGAGAGCTCTGACTGAC
ACCTACTCACATACACGAGAGTGGTAGCAACTATTGTAGATTTTAATCTT
ATGCAGATGTTTAGAAATTTTAGTAAATGTAAATATGTAAATATTCTTTG
AGAGAGATGATAGATATTATAATGAAATAATGAAACACACGCTTAAACAA
GATCTAATACATTTCTTGACGATCTTCAAAAGATATAAAAGATATGTCAA
AGGCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_253:388748..393909-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055495 ID=TCONS_00055495|Name=TCONS_00055495|organism=Clytia hemisphaerica|type=transcript|length=5162bp|location=Sequence derived from alignment at scaffold_253:388748..393909- (Clytia hemisphaerica)
GGTTTCGTTGGACAGAATAACTCTACTTTAGTTCTTATAATCTATATCTT
GACTGATTTTTGCTATCAAGGATTGGTAATCGAAGGAGGCCGATTTGAAA
GAAATTTCTAAAGAGTTTTATGACTTCTCTGGCTATTACAGAAAAGTTGT
TACTCCATCTATATTTTTATTACCTCCACGGTATACCATCAAACGTATTC
TGTTCGTAAATAGATTCTGAATCATAATCTTTTATAACTGAATCTTTTTT
CTTTCAAGAGAACAAAAGAAAATGATAGAAAAAATAATGGCTATTTGGTA
TTGAATCTTCATGAAAATTAGAAAAGAAAGTAAGGTTTCAATATATTTTA
ACTCTAAAGTTACCTAAGATATCTCTCATTCATTCTAAATTACATAATTC
AGCATAATTCTAAATCTTTCTAGAATCTATAAAATATTTTTGATATTTAA
AGTGCGAAGGCGATAACTTTTTGTCAGCTTTTATTTTCAACCTTCCTTCC
ATTTCCCCTTCATTTTCTCTCGTTTCTCTTTACAGGGTTTCAGTCAGAAG
TGAGATGTAGCTGTTCTTTCAAGATGGATGTGGTTATTTCTCTATGTTAC
TTCAAGAATTGTCTTCCACTCCACGGCTACATCGGCTCTGTTTTTCCTGC
CCAAGAAATGTGCTTCATGTAGCGTACCAATATCCTCGTCAAATATTTTT
TAAAGGGGACTTTGTATTGTTTTTTCGTGGGTTACTCTTTCCTCCTTAAG
ACAATTATTATTACTTATAACAGGACTAAGAGACCACGTTTTTATTTGAC
CTAGAAAAAAAAATCAAATTTCAATTTCATATTATTTGAAAATGTGGTTT
AGACTTTAACTCAGTAATCCGATCAAAGTAACAGACAAATGAGTTGAACG
TCAAAAACACTGCCCTTTCTCTGTTGGAAAGATTATATCACATAACAAAA
ATTCACTCTTTCATCATTTATCATTTTTTAATCACTTTTTTACTTGTTAC
AGCTTCGTTTGATAGACCGTGCTCTCAAGTGGTATTTGTAAAGAAACTTT
GATATTGAAAGGCCTCGTAGCTGCAAGAAGAGCTCTACACAGCTTCGACT
TTTTCGCATGCAACCAGCAAACAGGATTAAACAAAATCTTCACAACACCC
ACGCAGATAAAGAATCGTTGCAAATCATTTTTATCTAACAAGTAAGCAAA
TAAATTAATATGACTGGGATGAAGAAGCTTCGTTTAGAGCATTCTTTACT
TTTCGCGATGGTTTGAGTATAAAGATGAGGCATGGCAATCCCCTTCCTCG
TTCACATGCTTATCGTCTTTTTGACGCATCAGCATTGCATCAAGTTGTTG
CCAATGCATGTTAGCAACCATTTTTAATCCAATGTATATCTTATACTTAA
AGCAGCGTCTGAACTCGGCATCAATTATTGATTACTGGCGTCAAATTATT
AAGTCGGCATGACAGAAATCAAATATAACTAAACTTCTATCATCCTGTTA
TTGTGTGTATAGGTGAGGTCTGTGTGCGTGTGTTCTAATTGTTTACCTGT
TTCGTTAGCAACTGATCGAAAAAGGATCACGGTGGTCTTTAAATTGCATA
ATATTCATATCTCTAATTCGCTTTCAATCTATTAAATGGCGACTAATTAT
AGCACATATTTTTCCTCCAGGATTTCTATTTTTGATTTTTGTTGATTGAT
TGCATAAAGCGTGGGAAGATACCTCTATTTTCAAATCACCTTACAAGTAG
CTGTTCAGCTCAGTTCCTCTTCATCCAAGCTGAGCTCTGAATCCCATTGC
TGACATCTAATTTTTGCGCCCGCAGTCGGTATGTCGGGCCACTTAAGAAA
CGAAAATCTGTTAGAGGATGCCGACCGCTCAAAAACTAGCTTGCCTGTCT
CATAGGTTAGGAAGCATGTACATATCTCACTCATCTTCTTCACCTTTCTT
TCTTTTCAACTTTAATGTAATTTTCCTAACACATCTAACGCAAAATATTT
TTTTCAAGCAGAAAATATTAAAATAACTACTACGTAAAGAATTATCTGAA
AGGTTTTATTTTACTACTAACGATAAATCTACCCGAAAAATTGGATGGGA
AAGTCTATTTTATGATACTTGTCTATTATTGTAGTAAAACTACTCAAAAA
CAAGAATGATGTATTGCATGTAAAGAACTTCTTGTTTTCGTCCTCAGGAA
CTCCCTACATTGTCGCCTGTCACTAGGTGTCCTCAATTCAATATCATCAA
AACTTTACAGTGCATACTAAGCAAACTAATTCGTGAGAAATTGCATTTTC
TTTCCTCAAAATGCCTTATGAATGTATAAAAAGTGCAGAGAATTTATTTC
GTATATTTATAAACAAGGGAGGTCCGTCTTTTGAACGGTCACCATGACAA
TATTAACCAACTGACGTCAACATACTATCTTTTACCTTATCTTTTAGTAT
TAATCCACTTTAAGGTTTTGAGACTTGCGAGACTTTTCCAGCGCCAGGGT
GTGTCCACTGAATCTGGCGACATTGAAGTTGGTCCCATTCCCCATAACCT
CTCGTTCAAGCATTTCTTCCTATTGGTTTGTGGCCTCCTAACTTCTGCTA
GTGAAATAACAACTGAGATATCTAATAAAAAAGCTTTTCCTGTTACAGGG
TTTGTTTTCATGGTAGGTGTCTCCAGTTTCCAAGGTAGTTCAAATTACGA
TAATGCGGTTCACTTTTTTTCCTTTCCTTATATTGAAGCTTGTTAATCTG
ATCACACAATCATCTTATAATGGTATTTCTAATTATAGGTAATTAATTAC
GAAGAGAATTGGTATAAAAAGAGAGATGGAGAGATTGTTGGAACTCATTA
CGAAGAAAAGCATCGACGAGGATCTAACCACGATCTTAACCAACATGTAT
AGCATCTCATCTATCGATTTCATCGAAGTTGGCAAATGGTTTTTGTTCTT
GAACATACCAGCCATTGTTTTCTTATTCATTGTGAAGAATCCAGTGGTCT
TCTTAAAACTCTTTCTAAGGTGAGATTTCTCTTTCTTTCTCCTCTTCTCT
TTAGCAGGATTTTGTTCAGCCCACGTTTGTAAGTGGCATGAGAGAAAATT
CTTAATCTCTGCTTTCTTGATAGCAACTCCAACCTTGGAAATTCAAGCTT
TGTAGAAGAACAACTTGCATTTAGCAAAAATATGATGCTAACTATATACA
GATACAGGCTACTTTAATATCATACCTTAATTGCTTCACACGTTAATTAG
CTATATTTCTCTTCAGTCCATATTTTATTGTACAATCATTTAATTGGAGA
GGCTGGACTTGTTACCCTCTAGATAATAGCATACTTAAACCAATATTCAC
GGTAGAGAAAAATCCCCCACTAGATTGCAAGATCTACACAGCTAAAGGCT
AAACATCACCTACAATGTTTCAATTCAATAATCTCTCACTTTTTTCTTCA
ATTCAGATGTCGAATCTTTCAACTTGGTTTTTTTAAACGACAAATCGCCG
TTGGTGAGCAACTCTTCTCTTACATTGAACGCGGAAATTCATCTTCCAAG
AAAACATCCCTTCTCTTCATCCACGGTTACTCAAACTCCAAAGAAATCTT
TCTTGACGTCATTGCTTGGTTGCCACGTGACCTTCATGTCATTTCAGTGG
ATTTGCCTGGTCATGGAGAAAGCATGTGGGATGAGAAGGACCAAGTCAGC
ATCACCAATTACGTTGACAAAATTCACCAGGTAAGAAAAACATACCCAAA
TTATCTTTTAACAGAGANAGCATCACCAATTACGTTGACAAAATTCACCA
GGTAAGAAAAACATTATTAAATTATTTTTTAACAGATGAAAAGTTTTAAA
ACCATTTAATGAGCTGGAAAATACCTAATGTTTTGTTTTATGTACTGTCG
AACTGTGTAAATGAGCTGTTCATCTTTTTTCTTCAGTTTGTGCAAGCAGT
TGGATTAAACAAAAAGAAGTTTCACATCGTTGGTGAATCCATGGGCGGGC
ATATTGCGGGCGTTTATTCTGCCACACACCCTTCATCAATCGAGAAGACC
ACCCTGATGTGTCCACATGGTATCAAGTTTGATCAAATGGAAAAAATGAA
AGCTGAATACGAACGCTCTGGGCATTGTATCTTATTACCGGATAGTCTGC
AAACTGTCCGTGAAATGTTCGAATGTGTCCTTCACAAGAAATTTCCCTTC
CCTGATTTCGTATTGAATGGTATTTTACAAATGAGATTGCAAAATGACGA
CTTCAACAAAAAACGTAAGTCAATTTCATTGAAAGTTCACTTTTGAAATG
AGCTGATTTCTCTGACCTCAAAGTTTCGCATACCTTCTAAATTTCAAGTA
AAATCAATAAGAACACACAGATAAGTATATCAAAATGGAGAAAAATATAA
TGTATTTTCCTCTTGACATTTCAGTGTTGTTACGTTTGGTGTCGTCTGAA
GACGAAGATCTCTTGGAACGTTCATTACACAACATACGATCACCCTGCAC
ACTCCTTTGGGGAAAACAGGATAAGGTAAGGAAAATACTCTTTGATATCT
TTCCAACTTGTTCTCGAAGATTGTTGGTTCGTCACTATAGAGGATGCAAA
CTTTTATTTGAGACATAGAAATCTTCAAACAACAAATACCTTTTAGTACG
TCTATTAGTGAGATAAGATCGGTATCTGTTGAGATTGTGCTAACTACATT
CTTCTTCTAATGTAACGTTTCGTTTGTTTATTTTTTGTAGATCTTGGACG
TATCTTGCGCAGATAAGATCAAATCCAACCTCCCCAACCTCAAAAAGACG
GTGATTTTTGACGATGCGGGACATGTCTTGTCAATTGACTGTCCGCGAAA
AGTGGCTAACAATTTAATGGAATGTTAAAAACCTAACGACCCTCTGATGA
GGTGATGAAAGTCAATACATTTTTAACAGACGGATGAGCGAGAGCTCTGA
CTGACACCTACTCACATACACGAGAGTGGTAGCAACTATTGTAGATTTTA
ATCTTATGCAGATGTTTAGAAATTTTAGTAAATGTAAATATGTAAATATT
CTTTGAGAGAGATGATAGATATTATAATGAAATAATGAAACACACGCTTA
AACAAGATCTAATACATTTCTTGACGATCTTCAAAAGATATAAAAGATAT
GTCAAAGGCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034914XLOC_034914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055495-exon-scaffold_253-1575043694:393581..393909TCONS_00055495-exon-scaffold_253-1575043694:393581..393909Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:393242..393374TCONS_00055495-exon-scaffold_253-1575043694:393242..393374Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:392719..392907TCONS_00055495-exon-scaffold_253-1575043694:392719..392907Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:390891..391121TCONS_00055495-exon-scaffold_253-1575043694:390891..391121Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:390180..390453TCONS_00055495-exon-scaffold_253-1575043694:390180..390453Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:389646..389973TCONS_00055495-exon-scaffold_253-1575043694:389646..389973Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:389385..389485TCONS_00055495-exon-scaffold_253-1575043694:389385..389485Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1575043694:388748..389169TCONS_00055495-exon-scaffold_253-1575043694:388748..389169Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:393581..393909TCONS_00055495-exon-scaffold_253-1510915933:393581..393909Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:393242..393374TCONS_00055495-exon-scaffold_253-1510915933:393242..393374Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:392719..392907TCONS_00055495-exon-scaffold_253-1510915933:392719..392907Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:390891..391121TCONS_00055495-exon-scaffold_253-1510915933:390891..391121Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:390180..390453TCONS_00055495-exon-scaffold_253-1510915933:390180..390453Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:389646..389973TCONS_00055495-exon-scaffold_253-1510915933:389646..389973Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:389385..389485TCONS_00055495-exon-scaffold_253-1510915933:389385..389485Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1510915933:388748..389169TCONS_00055495-exon-scaffold_253-1510915933:388748..389169Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:393581..393909TCONS_00055495-exon-scaffold_253-1491911889:393581..393909Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:393242..393374TCONS_00055495-exon-scaffold_253-1491911889:393242..393374Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:392719..392907TCONS_00055495-exon-scaffold_253-1491911889:392719..392907Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:390891..391121TCONS_00055495-exon-scaffold_253-1491911889:390891..391121Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:390180..390453TCONS_00055495-exon-scaffold_253-1491911889:390180..390453Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:389646..389973TCONS_00055495-exon-scaffold_253-1491911889:389646..389973Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:389385..389485TCONS_00055495-exon-scaffold_253-1491911889:389385..389485Clytia hemisphaericaexon
TCONS_00055495-exon-scaffold_253-1491911889:388748..389169TCONS_00055495-exon-scaffold_253-1491911889:388748..389169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:388748..393909 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53578	2.38629	0.746479	0.397909	3.49477	2.55078	13.9031	13.8411	9.52165	3.69151	3.8571	7.12278	12.6853	17.5378	2.01162	3.17223	1.71442	3.97256	58.1129	56.9253	2.25926	4.29103	6.51326	8.37662	10.6182	12.1824	4.14262	2.21604	3.50494	3.15493
Blast
[Close]
BLAST of TCONS_00055495 vs. Swiss-Prot (Human)
Match: ABHD6 (Monoacylglycerol lipase ABHD6 OS=Homo sapiens GN=ABHD6 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.512e-53
Identity = 102/310 (32.90%), Postives = 181/310 (58.39%), Query Frame = 2 
Query:  812 LNIPAIVFL--FIVKNPVVFLKLFLRCRIFQLGFFKRQIAVGEQLFSYIERGNSSSKKTSLLFIHGYSNSKEIFLDVIAWLPRDLHVISVDLPGHGESMWDEKDQVSITNYVDKIHQFVQAVGLNKKKFHIVGESMGGHIAGVYSATHPSSIEKTTLMCPHGIKF---DQMEKMKAEYERSGHC---ILLPDSLQTVREMFECVLHKKFPFPDFVLNGILQMRLQNDDFNKKLLLRLVSSEDEDLLERSLHNIRSPCTLLWGKQDKILDVSCADKIKSNLPNLKKTVIFDDAGHVLSIDCPRKVANNLME 1717
            L IP + F+  F++  P   ++++       LG   R +   +  F Y  RG     K S+L +HG+S  K+++L V+ +LP++LH++ VD+PGH  +     D +SI   V +IHQFV+ + LNKK FH+VG SMGG +AGVY+A +PS +    L+CP G+++   +Q  +   E + S       L+P + + + EM +   + +F  P  +L G++ +R+ +++F +KL L +VS +    L +++  I+ P  ++WGKQD++LDVS AD +  ++ N  +  + ++ GH + ++ PRK A  +++
Sbjct:   16 LAIPILAFVASFLLW-PSALIRIYYWYWRRTLGMQVRYVHHEDYQFCYSFRGRPG-HKPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLDDLSIDGQVKRIHQFVECLKLNKKPFHLVGTSMGGQVAGVYAAYYPSDVSSLCLVCPAGLQYSTDNQFVQRLKELQGSAAVEKIPLIPSTPEEMSEMLQLCSYVRFKVPQQILQGLVDVRIPHNNFYRKLFLEIVSEKSRYSLHQNMDKIKVPTQIIWGKQDQVLDVSGADMLAKSIANC-QVELLENCGHSVVMERPRKTAKLIID 322
The following BLAST results are available for this feature:
BLAST of TCONS_00055495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABHD63.512e-5332.90Monoacylglycerol lipase ABHD6 OS=Homo sapiens GN=A... [more]
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