TCONS_00055509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055509
Unique NameTCONS_00055509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055509 ID=TCONS_00055509|Name=TCONS_00055509|organism=Clytia hemisphaerica|type=transcript|length=635bp
tcagattttaaacaaaaacttaaaaaatagataaataaataaaataaagc
ttCAAGATGGATAGTGAAATGGCAAAGAAGACATTTGAGCTGCAAAACAA
TATTGAGACTGTCAATACAGTGGATGAGATTTATAAATATATAGTCAAGA
AAAACAGCAAGAAATACTATCAAGAAAACCATAGACTAAAGATCCGCATT
ACTTCAAGAATATCAAAGTATCAGCTCTTGCATTACTAAAGATGGTGATG
CATGCACGATCAGGGGGGACACTGGAAGGCATGGGTTTGGTGTTAGGGAA
AGTTGACGGAGACACCATGATCGTGATTGATGCACCATGATCGTGAGGGA
TGCCTTTGCATTGCCCGTTTAAGGGACTGAGACGAGAGTCAATGCACAAG
CTGCTGCTTATGAATACATGACACAATATATCGAATCTTCAAAATCTGTT
GGACGTTTAGAAAATGCGATTGGTTGGTACCATTCACATCCTGGATACGG
ATGCTGGCTTTCTGGTATCGACGTGTCCACACAAATGGTCAACCTACAGT
TTCAAGAACAATTTGTAGCTATCGTTGTAAGATCTCTTTCTTTATCATGT
CACTTTGCAGGAGTTGCTTGATTGCTTAAAAGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_253:465420..466714-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055509 ID=TCONS_00055509|Name=TCONS_00055509|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at scaffold_253:465420..466714- (Clytia hemisphaerica)
TCAGATTTTAAACAAAAACTTAAAAAATAGATAAATAAATAAAATAAAGC
TTCAAGATGGATAGTGAAATGGCAAAGAAGACATTTGAGCTGCAAAACAA
TATTGAGACTGTCAATACAGTGGATGAGATTTATAAATATATAGTCAAGA
AAAACAGCAAGAAATACTATCAAGAAAACCATAGACTAAAGAGTATGTTA
TCTGATTATTTCCTTTTTACTCCTTCAAATGTTTTGGCACAATATATCTG
TGGAAACATCAGGTTTTGCTCATTGTCTATATTTGATCAGCCATCTCATA
TTCCTTCTTTGTAGTCCGCATTACTTCAAGAATATCAAAGTATCAGCTCT
TGCATTACTAAAGATGGTAAGCTCTTGACTTTTAAAGTGACATTGGGATC
TCTCTTTATTTCCCCCAATGGTTCCAACACATTTGGATCAATTTTCATCC
TAATTATCCTAATTGTTCCCACAATATCTTGATAAGTATAGTACACCATA
TGAACAATCCTGAAGCGATGCTTATTCTCAAAAAATATACATTTGTATCC
AGATTTTCTGTGAAAACTTTCAAGTTACAGCAGCTAATACGATGGCAAAT
TTACCCCCCCCCCACTGCACCTGTAATTTCTATAAGCCTTGTTTTCGTAG
AGAAGTTGATATGTTCCATTCAACCATGTTGTTTTCATAATCATTCATTT
ACCAGGTGATGCATGCACGATCAGGGGGGACACTGGAAGGCATGGGTTTG
GTGTTAGGGAAAGTTGACGGAGACACCATGATCGTGATTGATGCACCATG
ATCGTGAGGGATGCCTTTGCATTGCCCGTTTAAGGGACTGAGACGAGAGT
CAATGCACAAGCTGCTGCTTATGAATACATGACACAATATATCGAATCTT
CAAAATCTGTGAGTTTCATGCTTTTACAGAAATTATTGTCAAAACGAAAA
ATGAGCTATTTATTATTTATATTTAGCATGCTTTTAAAATTCACGAGAGT
GTCAGATATTTGCCACCGATTATGAAGAGCGTTTGACTAACATCATCACA
AGCCCCCCCCCCATGAGCCATCTACTTTTTATTGTTCTTCAGTTTTTCTT
TGGGTAGGTTGGACGTTTAGAAAATGCGATTGGTTGGTACCATTCACATC
CTGGATACGGATGCTGGCTTTCTGGTATCGACGTGTCCACACAAATGGTC
AACCTACAGTTTCAAGAACAATTTGTAGCTATCGTTGTAAGATCTCTTTC
TTTATCATGTCACTTTGCAGGAGTTGCTTGATTGCTTAAAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034914XLOC_034914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055509-exon-scaffold_253-1575043694:466523..466714TCONS_00055509-exon-scaffold_253-1575043694:466523..466714Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1575043694:466349..466400TCONS_00055509-exon-scaffold_253-1575043694:466349..466400Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1575043694:465807..466009TCONS_00055509-exon-scaffold_253-1575043694:465807..466009Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1575043694:465420..465607TCONS_00055509-exon-scaffold_253-1575043694:465420..465607Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1510915933:466523..466714TCONS_00055509-exon-scaffold_253-1510915933:466523..466714Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1510915933:466349..466400TCONS_00055509-exon-scaffold_253-1510915933:466349..466400Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1510915933:465807..466009TCONS_00055509-exon-scaffold_253-1510915933:465807..466009Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1510915933:465420..465607TCONS_00055509-exon-scaffold_253-1510915933:465420..465607Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1491911889:466523..466714TCONS_00055509-exon-scaffold_253-1491911889:466523..466714Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1491911889:466349..466400TCONS_00055509-exon-scaffold_253-1491911889:466349..466400Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1491911889:465807..466009TCONS_00055509-exon-scaffold_253-1491911889:465807..466009Clytia hemisphaericaexon
TCONS_00055509-exon-scaffold_253-1491911889:465420..465607TCONS_00055509-exon-scaffold_253-1491911889:465420..465607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:465420..466714 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.0146	77.7954	100.088	103.923	15.9713	13.0486	18.3643	17.089	16.7697	10.9192	14.1724	9.97115	10.8112	11.8637	20.5953	18.9298	33.043	33.6569	15.27	12.3432	21.9767	24.9233	36.2608	29.335	8.98428	8.14804	17.5302	13.2193	20.1899	23.1829
Blast
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BLAST of TCONS_00055509 vs. Swiss-Prot (Human)
Match: CSN5 (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 1.167e-53
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  334 TMIVRDAFALPV*GTETRVNAQAAAYEYMTQYIESSKSVGRLENAIGWYHSHPGYGCWLSGIDVSTQMVNLQFQEQFVAIVV 579
            TMI+ D+FALPV GTETRVNAQAAAYEYM  YIE++K VGRLENAIGWYHSHPGYGCWLSGIDVSTQM+N QFQE FVA+V+
Sbjct:   89 TMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVI 170

HSP 2 Score: 99.7525 bits (247), Expect = 1.167e-53
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  140 YSQEKQQEILSRKP*TKDPHYFKNIKVSALALLKMVMHARSGGTLEGMGLVLGKVDGDTMIVIDA 334
            Y +++QQEIL+ KP TKD HYFK  K+SALALLKMVMHARSGG LE MGL+LGKVDG+TMI++D+
Sbjct:   31 YDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDS 95
The following BLAST results are available for this feature:
BLAST of TCONS_00055509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN51.167e-5382.93COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
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