TCONS_00055570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055570
Unique NameTCONS_00055570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055570 ID=TCONS_00055570|Name=TCONS_00055570|organism=Clytia hemisphaerica|type=transcript|length=2145bp
CTCTAAGCTATATTACGTCTCACAAAGTAAGTTGCAACTGATCAAAAAGG
GGAAAGAGTTTCTACTCTTTTTGTGCTTCTTTTCCttgaaattagatttt
aatttccAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTA
TGTCGAGAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTC
AACATTTCAAGCTTCACGATctagaaaataataataaaatatggAAGAGT
CACAAGAAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAA
CAATTAAACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAAC
AGATAAGGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCA
AATGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTG
ATGGAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTATT
CATGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACAT
TACTCGTTGCACTGAAGGTACGATATCCAGAAAGAATCACTATTCTTCGC
GGAAATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGA
ATGTCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACT
TGTTCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAATCTTTTGT
TTACACGGTGGTTTATCGCCTTCAATCGACACACTTGATCACATTCGTGC
ACTCGACCGTTTACAAGAAGTACCACACGAAGGACCCATGTGTGATCTCT
TATGGTCTGACCCTGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGT
GCTGGATACACTTTCGGACAGGATATCTCGGAAACTTTCAATCATACAAA
CGGATTAACGCTTATCGCTCGTGCTCATCAACTTGTTATGGAGGGTTATA
ATTGGTGTCATGATCGAAACGTCGTCACGATATTCAGCGCACCTAATTAT
TGTTATCGGTGTGGTAACcaagccgccattatggaaCTGGACGACGCGCT
CAAATATTCATTCTTGCAATTCGACCCTGCTCCAAGGCGAGGAGAGCCGC
ATGTCACTAGACGCACCCCAGACtatttcctataaaaaaacaacaacaac
gaaTATTCATTGACATTGTGAAAAGCAACTTAGGTCCAACTTAGGTTGAA
TTTAAAACATCTCATTGATGTTTGGAAGGGACAGATTCATGTTTAATGTA
CAGATTTGATCAATCAATAGAAGGGTGAATCGCATATTTGTAAATTATGA
GTTACCGTGACCACACCCTCGTTACGTCATCGTGATTCCCTCCGAaagca
aatttaaattttattccTTCTCTCTCCAGATTCACTTATTTTTTAACTGA
TTAACGAAAAAAATATAGACAAAGTTTGCCGAGTTGCAGGTCAGCTACCC
CTTAGAGTATCAATAACACTTACCTTGTTTAACTTTCAGTGAAAGCTCCT
ATACTAAAATGATTAAGTATTCAACACCAATACCAATCCACTAGGTTCCG
AATTTTACCCTttacttttataagaattttttgtttcaatctCTTACCTA
CGTGTTGTGGTTCTCAACGTTGTTACGTAAAAACCGGATGTCCACGTAAA
CGTATGCCTTTTCGTTCCCCAaatgtgtttttattttaacGTGATAATGA
TTGCTAGGCCTTTCTAGAttaagaaattttcttttttatgatgatATAGG
TTGATGAAACAACTCTCTCGATGCAgtattttttattactttctcTATAC
TACTAAAGAAAATAGATAGATTCTGTTTATGTATCTATTGTAAATTCTAA
TCATTAGACCAAAAATCACgttataataaataaaataaaatttcaattgt
cttattagaTAATAAAgagatgtattttatttatCCTTTGCTAAATCCTC
CAAATTCTGACTCGTTTCAACAACTTGAAGGTTAATTTTTATAACTCTGC
TCCAATAGTACTAGAGAAGTAAGCAACCTAGAGGTGTCGTCTCTTTGCAG
AAAAACTGATACCTTACCTAGCCTTTGGAACAAAATGTTTGTAat
Run BLAST on NCBI

transcript from alignment at scaffold_253:1150514..1155172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055570 ID=TCONS_00055570|Name=TCONS_00055570|organism=Clytia hemisphaerica|type=transcript|length=4659bp|location=Sequence derived from alignment at scaffold_253:1150514..1155172- (Clytia hemisphaerica)
CTCTAAGCTATATTACGTCTCACAAAGTAAGTTGCAACTGATCAAAAAGG
GGAAAGAGTTTCTACTCTTTTTGTGCTTCTTTTCCTTGAAATTAGATTTT
AATTTCCAACCCTTAATCCTCTCCTTAATCCAGACCCTTATGTTACAGTA
TGTCGAGAGAGTAACGACTAACAGACTGATTTCAAATGATGTTTTTTCTC
AACATTTCAAGCTTCACGATCTAGAAAATAATAATAAAATATGGAAGAGT
CACAAGAAAGCAGGACTGGTATGAACAAAGATCTCGACCAATGGATAGAA
CAATTAAACGACTGTAAACAATTATCAGAAAACCAAGTAAAAAATTTAAC
AGATAAGGTATGTTATATCTCTTCTATTTTGTTTTACTATGATAGTTTTG
TAATTTGATCCAAAATCAATAATAGCATGAAAAGAATGGTTTCGAGGTAA
ATATTTACTGTATTTGTATTTTCATGTTGGATTTTTTAGAAAAAAGTTTT
GCCAGTTTTAATTTTATTTTCCACTCCTTATCCATTTCTACTCCAGGCAA
AAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTCAAATGTCCAGTC
ACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTTGATGGAACTCTT
CCGTATAGGGGGCAAATCACCCGACACCAACTATTTATTCATGGGTGATT
ACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACATTACTCGTTGCA
CTGAAGGTTAGAGTCATTGTTTGCCTTTGCAGGCTGCTCTTATTTGAGTA
ATATTGGCCATATTTAAATTGTATTTTTTTTTTGCAATTAAAGACACTCC
AAAACATCTCCCCCTTTCACAAAATCTGGTTCTTTTCGAAGAAGCTATTT
TGTTTTCCTAAATTAGTCGAAATTTTTCTTGAGATCAAATCTCCCCTTCA
TTATTTTTTTTCTCCCTTTCTCATCAACTTCATGATTTTTTGAATGCCTA
TCTATCAAACTATTAATTAATTTTGCTCTTGTGTCATAACTTTGTTAAAT
TTTAGGTACGATATCCAGAAAGAATCACTATTCTTCGCGGAAATCACGAA
AGTCGACAAATTACACAAGTATACGGGTTTTACGATGAATGTCTAAGGAA
ATACGGTAACGCTAATGTTTGGAAATACTTCACGGACTTGTTCGACTACC
TTCCATTAACGGCACTCGTTGACAGTCAAGTAAGTCCTTTTTACAGCTTC
TAAATCAAGCGAAATTTACCTTAGGCAACAAGCTCTTTCTCGAAGGAGTA
CATAAAAAACCTGTTTTCGAATGAGTTTTGACCCTGGAGGGGTAAAGTTA
ATAACAAAAAACTCAGAATAACAGAAGCTCTCCTCTTTTTTGAGAGAACA
TTCGAATAAGTGATGTGTAAGGATTTGTATGCCCTTGCGATGCTACCGCA
ATTTTCTGTAAATTGTTCGTTTCCTACACAGTGTTCACTGATCAGGGACT
TATTTCTCTTTTCTAGATCTTTTGTTTACACGGTGGTTTATCGCCTTCAA
TCGACACACTTGATCACATTCGTGCACTCGACCGTTTACAAGAAGTACCA
CACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCCTGATGACCGTGG
AGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTTTCGGACAGGATA
TCTCGGAAACTTTCAATCATACAAACGGATTAACGCTTATCGCTCGTGCT
CATCAACTTGTTATGGAGGTGAGTTCTTTTTTAGTACCCTTTTCACCACT
CCAAACTGCTCCAAACTTACGCTAAGTTACATAGCCTTGTAAATTGATGT
CTTTCCATACTTTTCACCTTGAAAGCTACCATGAATAGATAAGTTTCAAG
AAACTCTTCATTTAACTCATTCAATCTGATTCAGTTACGATGATAACTTC
AAATTATACGGATTGTAGGTGAAAAGTTATGCCCCTGCCCCTANCATTTC
TACTCCAGGCAAAAGAAATATTATCAAAAGAATCAAACGTCCAAGATGTC
AAATGTCCAGTCACAGTATGTGGTGATGTTCATGGGCAATTTCACGACTT
GATGGAACTCTTCCGTATAGGGGGCAAATCACCCGACACCAACTATTTAT
TCATGGGTGATTACGTAGATCGTGGCTATTACTCAGTGGAAACTGTCACA
TTACTCGTTGCACTGAAGGTTAGAGTCATTGTTTGCCTTTGCAGGCTGCT
CTTATTTGAGTAATATTGGCCATATTTAAATTGTATTTTTTTTTTGCAAT
TAAAGACACTCCAAAACATCTCCCCCTTTCACAAAATCTGGTTCTTTTCG
AAGAAGCTATTTTGTTTTCCTAAATTAGTCGAAATTTTTCTTGAGATCAA
ATCTCCCCTTCATTATTTTTTTTCTCCCTTTCTCATCAACTTCATGATTT
TTTGAATGCCTATCTATCAAACTATTAATTAATTTTGCTCTTGTGTCATA
ACTTTGTTAAATTTTAGGTACGATATCCAGAAAGAATCACTATTCTTCGC
GGAAATCACGAAAGTCGACAAATTACACAAGTATACGGGTTTTACGATGA
ATGTCTAAGGAAATACGGTAACGCTAATGTTTGGAAATACTTCACGGACT
TGTTCGACTACCTTCCATTAACGGCACTCGTTGACAGTCAAGTAAGTCCT
TTTTACAGCTTCTAAATCAAGCGAAATTTACCTTAGGCAACAAGCTCTTT
CTCGAAGGAGTACATAAAAAACCTGTTTTCGAATGAGTTTTGACCCTGGA
GGGGTAAAGTTAATAACAAAAAACTCAGAATAACAGAAGCTCTCCTCTTT
TTTGAGAGAACATTCGAATAAGTGATGTGTAAGGATTTGTATGCCCTTGC
GATGCTACCGCAATTTTCTGTAAATTGTTCGTTTCCTACACAGTGTTCAC
TGATCAGGGACTTATTTCTCTTTTCTAGATCTTTTGTTTACACGGTGGTT
TATCGCCTTCAATCGACACACTTGATCACATTCGTGCACTCGACCGTTTA
CAAGAAGTACCACACGAAGGACCCATGTGTGATCTCTTATGGTCTGACCC
TGATGACCGTGGAGGTTGGGGAATCTCACCTCGTGGTGCTGGATACACTT
TCGGACAGGATATCTCGGAAACTTTCAATCATACAAACGGATTAACGCTT
ATCGCTCGTGCTCATCAACTTGTTATGGAGGTGAGTTCTTTTTTAGTACC
CTTTTCACCACTCCAAACTGCTCCAAACTTACGCTAAGTTACATAGCCTT
GTAAATTGATGTCTTTCCATACTTTTCACCTTGAAAGCTACCATGAATAG
ATAAGTTTCAAGAAACTCTTCATTTAACTCATTCAATCTGATTCAGTTAC
GATGATAACTTCAAATTATACGGATTGTAGGTGAAAAGTTATGCCCCTGC
CCCTAGAAGATTAACTCCCATAAAAGATACAGTTAAAATAATCACACCAT
TTTTTAGGGTTATAATTGGTGTCATGATCGAAACGTCGTCACGATATTCA
GCGCACCTAATTATTGTTATCGGTGTGGTAACCAAGCCGCCATTATGGAA
CTGGACGACGCGCTCAAATATTCATTCTTGCAATTCGACCCTGCTCCAAG
GCGAGGAGAGCCGCATGTCACTAGACGCACCCCAGACTATTTCCTATAAA
AAAACAACAACAACGAATATTCATTGACATTGTGAAAAGCAACTTAGGTC
CAACTTAGGTTGAATTTAAAACATCTCATTGATGTTTGGAAGGGACAGAT
TCATGTTTAATGTACAGATTTGATCAATCAATAGAAGGGTGAATCGCATA
TTTGTAAATTATGAGTTACCGTGACCACACCCTCGTTACGTCATCGTGAT
TCCCTCCGAAAGCAAATTTAAATTTTATTCCTTCTCTCTCCAGATTCACT
TATTTTTTAACTGATTAACGAAAAAAATATAGACAAAGTTTGCCGAGTTG
CAGGTCAGCTACCCCTTAGAGTATCAATAACACTTACCTTGTTTAACTTT
CAGTGAAAGCTCCTATACTAAAATGATTAAGTATTCAACACCAATACCAA
TCCACTAGGTTCCGAATTTTACCCTTTACTTTTATAAGAATTTTTTGTTT
CAATCTCTTACCTACGTGTTGTGGTTCTCAACGTTGTTACGTAAAAACCG
GATGTCCACGTAAACGTATGCCTTTTCGTTCCCCAAATGTGTTTTTATTT
TAACGTGATAATGATTGCTAGGCCTTTCTAGATTAAGAAATTTTCTTTTT
TATGATGATATAGGTTGATGAAACAACTCTCTCGATGCAGTATTTTTTAT
TACTTTCTCTATACTACTAAAGAAAATAGATAGATTCTGTTTATGTATCT
ATTGTAAATTCTAATCATTAGACCAAAAATCACGTTATAATAAATAAAAT
AAAATTTCAATTGTCTTATTAGATAATAAAGAGATGTATTTTATTTATCC
TTTGCTAAATCCTCCAAATTCTGACTCGTTTCAACAACTTGAAGGTTAAT
TTTTATAACTCTGCTCCAATAGTACTAGAGAAGTAAGCAACCTAGAGGTG
TCGTCTCTTTGCAGAAAAACTGATACCTTACCTAGCCTTTGGAACAAAAT
GTTTGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034947XLOC_034947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055570-exon-scaffold_253-1575043694:1154816..1155172TCONS_00055570-exon-scaffold_253-1575043694:1154816..1155172Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1575043694:1154417..1154626TCONS_00055570-exon-scaffold_253-1575043694:1154417..1154626Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1575043694:1152482..1152655TCONS_00055570-exon-scaffold_253-1575043694:1152482..1152655Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1575043694:1151943..1152194TCONS_00055570-exon-scaffold_253-1575043694:1151943..1152194Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1575043694:1150514..1151665TCONS_00055570-exon-scaffold_253-1575043694:1150514..1151665Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1510915933:1154816..1155172TCONS_00055570-exon-scaffold_253-1510915933:1154816..1155172Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1510915933:1154417..1154626TCONS_00055570-exon-scaffold_253-1510915933:1154417..1154626Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1510915933:1152482..1152655TCONS_00055570-exon-scaffold_253-1510915933:1152482..1152655Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1510915933:1151943..1152194TCONS_00055570-exon-scaffold_253-1510915933:1151943..1152194Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1510915933:1150514..1151665TCONS_00055570-exon-scaffold_253-1510915933:1150514..1151665Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1491911889:1154816..1155172TCONS_00055570-exon-scaffold_253-1491911889:1154816..1155172Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1491911889:1154417..1154626TCONS_00055570-exon-scaffold_253-1491911889:1154417..1154626Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1491911889:1152482..1152655TCONS_00055570-exon-scaffold_253-1491911889:1152482..1152655Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1491911889:1151943..1152194TCONS_00055570-exon-scaffold_253-1491911889:1151943..1152194Clytia hemisphaericaexon
TCONS_00055570-exon-scaffold_253-1491911889:1150514..1151665TCONS_00055570-exon-scaffold_253-1491911889:1150514..1151665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1150514..1155172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.30555	2.51915	7.79995	15.8344	16.4898	16.5175	10.6281	15.3394	0.870769	1.73636	0.984007	2.59897	2.17625	4.04431	2.05366	3.35831	1.81001	3.04783	0.915379	2.10733	2.99725	3.65489	4.67188	5.38577	19.4153	19.1429	2.51715	4.7885	1.14692	1.55804
Blast
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BLAST of TCONS_00055570 vs. Swiss-Prot (Human)
Match: PP2AB (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 286/305 (93.77%), Postives = 297/305 (97.38%), Query Frame = 1 
Query:  268 GMNKDLDQWIEQLNDCKQLSENQVKNLTDKAKEILSKESNVQDVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDSQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHTNGLTLIARAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDALKYSFLQFDPAPRRGEPHVTRRTPDYFL 1182
               K+LDQW+EQLN+CKQL+ENQV+ L +KAKEIL+KESNVQ+V+CPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD QIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNH NGLTL++RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDD LKYSFLQFDPAPRRGEPHVTRRTPDYFL
Sbjct:    5 AFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00055570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PP2AB0.000e+093.77Serine/threonine-protein phosphatase 2A catalytic ... [more]
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