TCONS_00055587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055587
Unique NameTCONS_00055587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055587 ID=TCONS_00055587|Name=TCONS_00055587|organism=Clytia hemisphaerica|type=transcript|length=376bp
GTTCtaattctatttctatttgtgacACTCTCAACCCAACCCTCCATTTT
ATCGTTAATCTTTTAACACAATTCTATTTGGTGCATTGATTGGTTACATT
TTGAGTCTCATCATCGATCAAGGTTTTGGCAGGTGATGTCATTTTTTGTT
GAAGTTTGGtggtttttctcatttttttgtagatttgttaaaatttctcc
atttttttaaaatccGAAGTTTTATGACAACCGTTCTGCTCTGACGTCAA
GTAAAAATATCTTCAGCATGTCCCATATACTTTTAATggtactgtaagtt
ggtctagtGTCAGCAACATTcctcttctaatttcaaaatccttctttaga
aataggaataataggaaggtcagaat
Run BLAST on NCBI

transcript from alignment at scaffold_253:162447..162822

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055587 ID=TCONS_00055587|Name=TCONS_00055587|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at scaffold_253:162447..162822 (Clytia hemisphaerica)
attctgaccttcctattattcctatttctaaagaaggattttgaaattag
aagaggAATGTTGCTGACactagaccaacttacagtaccATTAAAAGTAT
ATGGGACATGCTGAAGATATTTTTACTTGACGTCAGAGCAGAACGGTTGT
CATAAAACTTCggattttaaaaaaatggagaaattttaacaaatctacaa
aaaaatgagaaaaaccaCCAAACTTCAACAAAAAATGACATCACCTGCCA
AAACCTTGATCGATGATGAGACTCAAAATGTAACCAATCAATGCACCAAA
TAGAATTGTGTTAAAAGATTAACGATAAAATGGAGGGTTGGGTTGAGAGT
gtcacaaatagaaatagaattaGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034959XLOC_034959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055587-exon-scaffold_253-1491911889:162447..162822TCONS_00055587-exon-scaffold_253-1491911889:162447..162822Clytia hemisphaericaexon
TCONS_00055587-exon-scaffold_253-1510915933:162447..162822TCONS_00055587-exon-scaffold_253-1510915933:162447..162822Clytia hemisphaericaexon
TCONS_00055587-exon-scaffold_253-1575043694:162447..162822TCONS_00055587-exon-scaffold_253-1575043694:162447..162822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:162447..162822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.637325	0.207164	1.20269	0.235328	0.859468	0.226388	1.09251	0.767095	0.537061	0.886983	0.645695	0.424455	0.282576	0	0.120631	0.258912	0.159479	0.163461	0.45166	0.236315	0.205401	0.300562	0.243581	0.221451	0.228089	0.203564	0.2913	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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