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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055588 ID=TCONS_00055588|Name=TCONS_00055588|organism=Clytia hemisphaerica|type=transcript|length=1127bp
caaatattcaaaacaaaaaatcacacgtttctttgactttttaaaaattt
catcattttcaatGATTCCTGTGAGTTGGCGGCTACAAATTCTCAAATGG
ACAAAAAACATTGACGTCATTTGTAAACAGGAGGCTCTGTTGGTGTACAc
cattttttcttataagcaattCTGAATTTGGACTCAGGACTAGAGGCTAC
GCTAATCTCTGACAAACTTTCTTGCCAGGTAGCCACATCCTAAATTATAT
TTATGCTAAATTGGGCCATTGGCGATTGTTTACCATAGTTTTTagttaaa
ttatctaaaaagattttctttacgACTTGATGAAAAATTGGCTGACTAGA
GCCTTAGTAACCTGGTTGCTTATACaaaaaatgtgaatttttttacattt
tgtttttcaGTCACCGAGGGAATTACTTCTGAAGGTTTGTGGTGACTTGT
TTTTTATTCTAGCCCCTTCTTAAACCAACACGTACCCCACGGTGTAACGA
AGTCACGTCTGAGTAATCCTTGCGTAATCTTTTATAAGACAGATACTGAC
GTCAGTTTTCTAATTGACACGTAATTTTTTGAGCAAtatttgatgaagaa
aatcctctttcaaataaaaaacccATCTACATACAAACTGGTTTTCAGAT
TATTTGTTGCCCTGTGACTTTCTGAAAGTGGCCAAAGGGTAACGAGTTTA
CTATTAATCAGAACAACAAAAGTTATTCGTTTGACCAAACAAAGCTGATA
AAATGAGCTTTCTTTGCAAAAATCTTTGGACCCCCagttctgaaaaaaaa
accagCAAAATACTACCCTAGTTTAATGTTCAGTTGACCTAGTTGTCAAG
CAAGCTCACTTaaatggttttgtttttaaataagagtgatatcatttgct
tactcgtcaattttaattcacaagctttttcgcatTAGAtagacacggat
gtggagcaagattggtcagaaagatggaaagaaaagcaattttttgcgta
tatcagcataatatcacaatagcaagacactgtcccgatatgaaatgtgt
ctgatatgaaacgggaacacttatcaAAACGAAAGTCACCATAGAAACCA
AAGTATGAATGTTATACAAGAATGGTG Run BLAST on NCBI transcript from alignment at scaffold_253:187985..189111 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055588 ID=TCONS_00055588|Name=TCONS_00055588|organism=Clytia hemisphaerica|type=transcript|length=1127bp|location=Sequence derived from alignment at scaffold_253:187985..189111 (Clytia hemisphaerica)
CACCATTCTTGTATAACATTCATACTTTGGTTTCTATGGTGACTTTCGTT
Ttgataagtgttcccgtttcatatcagacacatttcatatcgggacagtg
tcttgctattgtgatattatgctgatatacgcaaaaaattgcttttcttt
ccatctttctgaccaatcttgctccacatccgtgtctaTCTAatgcgaaa
aagcttgtgaattaaaattgacgagtaagcaaatgatatcactcttattt
aaaaacaaaaccatttAAGTGAGCTTGCTTGACAACTAGGTCAACTGAAC
ATTAAACTAGGGTAGTATTTTGctggtttttttttcagaactGGGGGTCC
AAAGATTTTTGCAAAGAAAGCTCATTTTATCAGCTTTGTTTGGTCAAACG
AATAACTTTTGTTGTTCTGATTAATAGTAAACTCGTTACCCTTTGGCCAC
TTTCAGAAAGTCACAGGGCAACAAATAATCTGAAAACCAGTTTGTATGTA
GATgggttttttatttgaaagaggattttcttcatcaaataTTGCTCAAA
AAATTACGTGTCAATTAGAAAACTGACGTCAGTATCTGTCTTATAAAAGA
TTACGCAAGGATTACTCAGACGTGACTTCGTTACACCGTGGGGTACGTGT
TGGTTTAAGAAGGGGCTAGAATAAAAAACAAGTCACCACAAACCTTCAGA
AGTAATTCCCTCGGTGACtgaaaaacaaaatgtaaaaaaattcacatttt
ttGTATAAGCAACCAGGTTACTAAGGCTCTAGTCAGCCAATTTTTCATCA
AGTcgtaaagaaaatctttttagataatttaactAAAAACTATGGTAAAC
AATCGCCAATGGCCCAATTTAGCATAAATATAATTTAGGATGTGGCTACC
TGGCAAGAAAGTTTGTCAGAGATTAGCGTAGCCTCTAGTCCTGAGTCCAA
ATTCAGaattgcttataagaaaaaatggTGTACACCAACAGAGCCTCCTG
TTTACAAATGACGTCAATGTTTTTTGTCCATTTGAGAATTTGTAGCCGCC
AACTCACAGGAATCattgaaaatgatgaaatttttaaaaagtcaaagaaa
cgtgtgattttttgttttgaatatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055588-exon-scaffold_253-1491911889:187985..189111 | TCONS_00055588-exon-scaffold_253-1491911889:187985..189111 | Clytia hemisphaerica | exon |
| TCONS_00055588-exon-scaffold_253-1510915933:187985..189111 | TCONS_00055588-exon-scaffold_253-1510915933:187985..189111 | Clytia hemisphaerica | exon |
| TCONS_00055588-exon-scaffold_253-1575043694:187985..189111 | TCONS_00055588-exon-scaffold_253-1575043694:187985..189111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:187985..189111 . |
Blast
The following BLAST results are available for this feature:
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