TCONS_00055637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055637
Unique NameTCONS_00055637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055637 ID=TCONS_00055637|Name=TCONS_00055637|organism=Clytia hemisphaerica|type=transcript|length=817bp
CGTGACCGTCTGAATGGTATCTCAAAAAATCCTAACACTATAATCACTAA
CTTATCTTCGCACACCTTATCTGAAGACGAGTATGAAACGCTACGATTCG
GTTTAAACCATGGTCTTGCTAAACAACCCAAAGATACCGAAACTTTTGTT
GTTGCAGAAGAACTTTGGAATCAGCTGTACCGTtcgaaagttttgaaaaa
tggccATTATTCCGTTGAAAGAGCTAAAAACTTACTCCGAGGTTTTGCTT
TTAATTATATTAATATCGATGatcgtcaaattttcaaagactCTAAACAC
ATTAAATTGATAAAGAATCTTCGCAAATCAATCGCTATTTTGAAACCCGA
CAAAGGGAATGGCATCGTCTTGATTGACATAGCCGATTACCAAAATTCCA
TCGATTCGTTGTTTGCTGACAAAGCCAAATTTCGTAAAGTGAATGTCGAT
CCAACTGCTTCTAGACTTACCAGCATTCAACGTTACCTCAAAACCCTACT
TAATCGTAatgaaatcgatgaaaatgaaTACAAAGATATGAGACCGAAAA
ATGCAAAGCCAGCCAGAGCTCATGGTTTaccaaaaatccataaaaagTAT
GAACACTTACCTAAATTTCGACCAATCGTTGATACCACTGGAACAACACA
TTATTCTGTTGGTAAATATCTCACTAACCTCCTTAATCCTTTAACTGTCA
ATGACTACACACTTAAAGATTCATTCGATGCTGCCGAAAAAATCAAACAG
ATtccaaaagaactttttgacGATGGTTATGTCTTTGTATCGTTTGATGT
AACCTCTTTATTCACTA
Run BLAST on NCBI

protein sequence of TCONS_00055637-protein

>TCONS_00055637-protein ID=TCONS_00055637-protein|Name=TCONS_00055637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
RDRLNGISKNPNTIITNLSSHTLSEDEYETLRFGLNHGLAKQPKDTETFV
VAEELWNQLYRSKVLKNGHYSVERAKNLLRGFAFNYINIDDRQIFKDSKH
IKLIKNLRKSIAILKPDKGNGIVLIDIADYQNSIDSLFADKAKFRKVNVD
PTASRLTSIQRYLKTLLNRNEIDENEYKDMRPKNAKPARAHGLPKIHKKY
EHLPKFRPIVDTTGTTHYSVGKYLTNLLNPLTVNDYTLKDSFDAAEKIKQ
IPKELFDDGYVFVSFDVTSLFT
Run BLAST on NCBI

transcript from alignment at scaffold_253:1034214..1035030

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055637 ID=TCONS_00055637|Name=TCONS_00055637|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_253:1034214..1035030 (Clytia hemisphaerica)
TAGTGAATAAAGAGGTTACATCAAACGATACAAAGACATAACCATCgtca
aaaagttcttttggaATCTGTTTGATTTTTTCGGCAGCATCGAATGAATC
TTTAAGTGTGTAGTCATTGACAGTTAAAGGATTAAGGAGGTTAGTGAGAT
ATTTACCAACAGAATAATGTGTTGTTCCAGTGGTATCAACGATTGGTCGA
AATTTAGGTAAGTGTTCATActttttatggatttttggtAAACCATGAGC
TCTGGCTGGCTTTGCATTTTTCGGTCTCATATCTTTGTAttcattttcat
cgatttcatTACGATTAAGTAGGGTTTTGAGGTAACGTTGAATGCTGGTA
AGTCTAGAAGCAGTTGGATCGACATTCACTTTACGAAATTTGGCTTTGTC
AGCAAACAACGAATCGATGGAATTTTGGTAATCGGCTATGTCAATCAAGA
CGATGCCATTCCCTTTGTCGGGTTTCAAAATAGCGATTGATTTGCGAAGA
TTCTTTATCAATTTAATGTGTTTAGagtctttgaaaatttgacgatCATC
GATATTAATATAATTAAAAGCAAAACCTCGGAGTAAGTTTTTAGCTCTTT
CAACGGAATAATggccatttttcaaaactttcgaACGGTACAGCTGATTC
CAAAGTTCTTCTGCAACAACAAAAGTTTCGGTATCTTTGGGTTGTTTAGC
AAGACCATGGTTTAAACCGAATCGTAGCGTTTCATACTCGTCTTCAGATA
AGGTGTGCGAAGATAAGTTAGTGATTATAGTGTTAGGATTTTTTGAGATA
CCATTCAGACGGTCACG

Coding sequence (CDS) from alignment at scaffold_253:1034214..1035030

>TCONS_00055637 ID=TCONS_00055637|Name=TCONS_00055637|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_253:1034214..1035030 (Clytia hemisphaerica)
AGTGAATAAAGAGGTTACATCAAACGATACAAAGACATAACCATCgtcaa
aaagttcttttggaATCTGTTTGATTTTTTCGGCAGCATCGAATGAATCT
TTAAGTGTGTAGTCATTGACAGTTAAAGGATTAAGGAGGTTAGTGAGATA
TTTACCAACAGAATAATGTGTTGTTCCAGTGGTATCAACGATTGGTCGAA
ATTTAGGTAAGTGTTCATActttttatggatttttggtAAACCATGAGCT
CTGGCTGGCTTTGCATTTTTCGGTCTCATATCTTTGTAttcattttcatc
gatttcatTACGATTAAGTAGGGTTTTGAGGTAACGTTGAATGCTGGTAA
GTCTAGAAGCAGTTGGATCGACATTCACTTTACGAAATTTGGCTTTGTCA
GCAAACAACGAATCGATGGAATTTTGGTAATCGGCTATGTCAATCAAGAC
GATGCCATTCCCTTTGTCGGGTTTCAAAATAGCGATTGATTTGCGAAGAT
TCTTTATCAATTTAATGTGTTTAGagtctttgaaaatttgacgatCATCG
ATATTAATATAATTAAAAGCAAAACCTCGGAGTAAGTTTTTAGCTCTTTC
AACGGAATAATggccatttttcaaaactttcgaACGGTACAGCTGATTCC
AAAGTTCTTCTGCAACAACAAAAGTTTCGGTATCTTTGGGTTGTTTAGCA
AGACCATGGTTTAAACCGAATCGTAGCGTTTCATACTCGTCTTCAGATAA
GGTGTGCGAAGATAAGTTAGTGATTATAGTGTTAGGATTTTTTGAGATAC
CATTCAGACGGTCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035009XLOC_035009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055637-exon-scaffold_253-1491911889:1034214..1035030TCONS_00055637-exon-scaffold_253-1491911889:1034214..1035030Clytia hemisphaericaexon
TCONS_00055637-exon-scaffold_253-1510915933:1034214..1035030TCONS_00055637-exon-scaffold_253-1510915933:1034214..1035030Clytia hemisphaericaexon
TCONS_00055637-exon-scaffold_253-1575043694:1034214..1035030TCONS_00055637-exon-scaffold_253-1575043694:1034214..1035030Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055637-proteinTCONS_00055637-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1034214..1035030 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.116703	0	0.198206	0.193913	0.865594	0.994914	1.1253	1.40466	0.393374	0.42635	0.532061	0.388618	0.34927	0.443325	0.198804	0.177789	0.350434	0.179592	0	0.0649089	0.22567	0.0825556	0	0.0608261	0.313247	0.559132	0	0.0853905	0	0.197958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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