|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055650 ID=TCONS_00055650|Name=TCONS_00055650|organism=Clytia hemisphaerica|type=transcript|length=319bp
NNCTTTTCAAACTACCAAACACAATGAGGATGAGCAGTTGCTTACataaa
ttgaaagaagtttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAA
CTTAGACGTTCGATCGAAAGGAAACGCCTTGCTAACAAAAGACGAATCTA
ACAAGGCCATAATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGA
CCAGATGACTCTCAGTCAACAACAAAAGTTGAATTTCAGGTTAATGAGCG
AAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCG
ACCCAGAAAACGTTTTTAA Run BLAST on NCBI protein sequence of TCONS_00055650-protein >TCONS_00055650-protein ID=TCONS_00055650-protein|Name=TCONS_00055650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
LFKLPNTMRMSSCLHKLKEVLEGEIESSPCSLNLDVRSKGNALLTKDESN
KAIIQETQSNGDGENRPDDSQSTTKVEFQVNERKEDREASESFDPTKLRD
PENVF Run BLAST on NCBI transcript from alignment at scaffold_255:36576..38750+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055650 ID=TCONS_00055650|Name=TCONS_00055650|organism=Clytia hemisphaerica|type=transcript|length=2175bp|location=Sequence derived from alignment at scaffold_255:36576..38750+ (Clytia hemisphaerica)
NNCTTTTCAAACTACCAAACACAATGAGGATGAGCAGTTGCTTACataaa
ttgaaagaagtttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAA
CTTAGACGTTCGATCGAAAGGTATTACTTACCCTTTACTTAACATTCTTT
TATAATTGTTCAATTGCAACAGTGTGCAAGTAAAATATGCTCATTTCAAT
TTATGACCgaaacatttttcatattttaatcTTCTATTTTTCAGGAAACG
CCTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCCAGGAAACCCAA
TCAAATGGAGATGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAA
AGTTGAATTTCAGGTTAATGAGGTAATTTTGTTAATGAGTGTACTGTTTA
TAattacaatccgtgccataatatttttgcacttttggctaatttaccat
ttttcgaaaattgaagttcgagcgagaatgtcaattgtAGGCCCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttt
ttttgtcaatttgatGAAACTCTGCATTTTGAAAGATTGACCTATGCAGC
TTGGAAATTAATTATCTCATTAACAAAAGTCTTTTCCAAAGAAATTCTTT
CAGCAGTGGAAAGAAGAatgatttcttttctttgcattaaaaatttagat
tttttttatcattcttcCAATTTGAAATTAACGTTATTTTTTACTGAAgt
aattatgaaaaaatttacttGATCTCCGATGTTTTAAATCTACACCTTTG
CTTACTTATGACTTGATATCTCTTGAATCGAAAATTCTTTTGCAATGAAT
TTTTGACCACAAAAAGCTTCATGGTTATGCTTTTAACTGGTTTAAAAATT
AAGCTTAATATATAGATAGTTTTTTCAGAGCTACCCTTTACTTtttgagt
atacttttttgcggaacacactgtattatttttacatcgttgatgGAAGT
CGTTTTTTTAAGGTCAGCGGTAGAAATATTAATATTAAAATCAGATCAGc
tggaaatgttttttgacattttccattTCGCTCTTTCTTCTCATAAAAAC
TATTGAGTTGATTATAGGGTGAAAAGAACGAAGAACAATGaggaagtttt
tcaattttaaacttttacaattttaaacttttacaatttttgctttACTA
TAGGTCGTAGATAGCTCTAAAAAATACCCGATGACCcatatgaattttta
ttttttatttttggaaaattattttggaattttttaacccacgtgatttt
tttggacccacgaacccacgagtaATTTCAACCCACGCGATTTTTTTTNA
CGtgatttttttggacccacgaacccacgagtaATTTCAACCCAcgcgat
ttttttttggacccacgaacccacggacccacgagatattttgacccacg
gacccacgaacccacgagacattttaacccacgaacacccacgagggcac
gaacccacgaacccacgaacccacgacacgcacgtaaccaacgtaattta
gcagactcatttttctgatagtggattgtttttataaagaaaagcgttta
ataacttttttatttatttctcaaaaatctatttcaatagtgttgatagt
ttctcccaatagatatgctttcatttttctttatttttctgtattttgac
tagttatgtcttatgtgtttcattgtttaaatgttcattgattagttgga
taaccaggtaggtccataatagtattacttgttttttttccaattaaACC
TTACCTTTATGTTacctttctttttgaaatttcaaattacttCTCATTTT
TAAGCGAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGC
TACGCGACCCAGAAAACGTTTTTAA Coding sequence (CDS) from alignment at scaffold_255:36576..38750+ >TCONS_00055650 ID=TCONS_00055650|Name=TCONS_00055650|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_255:36576..38750+ (Clytia hemisphaerica)
CTTTTCAAACTACCAAACACAATGAGGATGAGCAGTTGCTTACataaatt
gaaagaagtttTGGAAGGTGAAATCGAAAGTTCGCCCTGCTCCTTAAACT
TAGACGTTCGATCGAAAGGAAACGCCTTGCTAACAAAAGACGAATCTAAC
AAGGCCATAATCCAGGAAACCCAATCAAATGGAGATGGCGAAAATAGACC
AGATGACTCTCAGTCAACAACAAAAGTTGAATTTCAGGTTAATGAGCGAA
AAGAAGATCGAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGAC
CCAGAAAACGTTTTTCTTTTCAAACTACCAAACACAATGAGGATGAGCAG
TTGCTTACataaattgaaagaagtttTGGAAGGTGAAATCGAAAGTTCGC
CCTGCTCCTTAAACTTAGACGTTCGATCGAAAGGAAACGCCTTGCTAACA
AAAGACGAATCTAACAAGGCCATAATCCAGGAAACCCAATCAAATGGAGA
TGGCGAAAATAGACCAGATGACTCTCAGTCAACAACAAAAGTTGAATTTC
AGGTTAATGAGCGAAAAGAAGATCGAGAAGCAAGCGAATCATTTGACCCA
ACGAAGCTACGCGACCCAGAAAACGTTTTTCTTTTCAAACTACCAAACAC
AATGAGGATGAGCAGTTGCTTACataaattgaaagaagtttTGGAAGGTG
AAATCGAAAGTTCGCCCTGCTCCTTAAACTTAGACGTTCGATCGAAAGGA
AACGCCTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCCAGGAAAC
CCAATCAAATGGAGATGGCGAAAATAGACCAGATGACTCTCAGTCAACAA
CAAAAGTTGAATTTCAGGTTAATGAGCGAAAAGAAGATCGAGAAGCAAGC
GAATCATTTGACCCAACGAAGCTACGCGACCCAGAAAACGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055650-exon-scaffold_255-1491911889:36576..36695 | TCONS_00055650-exon-scaffold_255-1491911889:36576..36695 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1510915933:36576..36695 | TCONS_00055650-exon-scaffold_255-1510915933:36576..36695 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1575043694:36576..36695 | TCONS_00055650-exon-scaffold_255-1575043694:36576..36695 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1491911889:36820..36947 | TCONS_00055650-exon-scaffold_255-1491911889:36820..36947 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1510915933:36820..36947 | TCONS_00055650-exon-scaffold_255-1510915933:36820..36947 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1575043694:36820..36947 | TCONS_00055650-exon-scaffold_255-1575043694:36820..36947 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1491911889:38680..38750 | TCONS_00055650-exon-scaffold_255-1491911889:38680..38750 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1510915933:38680..38750 | TCONS_00055650-exon-scaffold_255-1510915933:38680..38750 | Clytia hemisphaerica | exon |
| TCONS_00055650-exon-scaffold_255-1575043694:38680..38750 | TCONS_00055650-exon-scaffold_255-1575043694:38680..38750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_255 | supercontig | scaffold_255:36576..38750 + |
Blast
The following BLAST results are available for this feature:
|
