|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055655 ID=TCONS_00055655|Name=TCONS_00055655|organism=Clytia hemisphaerica|type=transcript|length=1121bp
TCCAGATTCAGAGCAATTTATATCCTCCTATTATTAGTGCGACAcctcca
aaataattatttttttggtcgtattaaattagagaaattacggtAGTTAT
TATCGCGACAGACATTAGAGAATTAGTTATTTCGTTGTTCGTTTTAGAAT
TCCCTTTTAAGCATACGCACAGAAAAACCTTATTCTTATTGAGGACCGAC
CTCCTTAAGATTGACCTTTCTAAATtgtcttttttacgtttttagtgTCA
GATTTCTAGCGAAACGCTCAGATTTCGGTTAAAGCTAAACAAAAAACTGT
AAGTTTTCCCAAATACTGTTTTCTGATTGGCTATGTAATCTCGTGACGTC
ACTctgaaccaatcaaaatgtTTGTATAAGGACATCAAATAGAGAGCTCT
TTACACCTAAAATCTCCGTATAAACGAGGAAGAAAATCAGagagactaaa
aaggagaagTTCAAAATTTAACGAGTAAAGCAAAAAGTCGATCGATTCTA
AAATAGAGAAGTTGGCATGGTTTTTAGTCGTTGGATTTGGATGTCTTTCG
GTGTTTAATTTTGTACAGTATCAAGAGATCAATTCTCGTTTTGTGGAATT
ACAACAAAATTATCAAGGTGAGAAAACCAGGACTCGGAGGGATGTTGCAA
ACGATGAAAATGAGGATTGGTATTCGTTCTTTGATCAACAAAAACTTATC
AAATTCATACAGAAGCAATCCAATCAAACAATTTACAAAGAAGTAAACCA
AATCTTGAAACATTCCTGCAGAAAAGTTATGTAAAGATTTAGTCAAATGT
GAGAAAGAAAAGTGTGAAGATGAAAGGAGAACAGTGGTTACTGAAGACAA
AACTGGCAATGGAAAATCAAGGTGTCTTCAAGGACCACCAGGGCCTCCGG
TAAGATATCTCTACAAGAGAGAAggggcgaaaataaaaaagatttttctt
tgatGAATAATTTTAAAGTTGAATTATTAAAGTGGGAGAGTGGAGCTTCT
ACAAAAGAGCTTCTGGGTAGAGATTAAAGGTTGATTCCTGTGCAGATTTA
GAAAGGTATTAGGGTAAATTCAAATTGCATTATAATGTTGACTTTTTAAG
TAAGTTTGAATAAGTTTTGAC Run BLAST on NCBI transcript from alignment at scaffold_255:66591..68419+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055655 ID=TCONS_00055655|Name=TCONS_00055655|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at scaffold_255:66591..68419+ (Clytia hemisphaerica)
TCCAGATTCAGAGCAATTTATATCCTCCTATTATTAGTGCGACAcctcca
aaataattatttttttggtcgtattaaattagagaaattacggtAGTTAT
TATCGCGACAGACATTAGAGAATTAGTTATTTCGTTGTTCGTTTTAGAAT
TCCCTTTTAAGCATACGCACAGAAAAACCTTATTCTTATTGAGGACCGAC
CTCCTTAAGATTGACCTTTCTAAATtgtcttttttacgtttttagtgTCA
GATTTCTAGCGAAACGCTCAGATTTCGGTTAAAGCTAAACAAAAAACTGT
AAGTTTTCCCAAATACTGTTTTCTGATTGGCTATGTAATCTCGTGACGTC
ACTctgaaccaatcaaaatgtTTGTATAAGGACATCAAATAGAGAGCTCT
TTACACCTAAAATCTCCGTATAAACGAGGAAGAAAATCAGagagactaaa
aaggagaagTTCAAAATTTAACGAGTAAAGCAAAAAGTCGATCGATTCTA
AAATAGAGAAGTTGGCATGGTTTTTAGTCGTTGGATTTGGATGTCTTTCG
GTGTTTAATTTTGTACAGTATCAAGAGATCAATTCTCGTTTTGTGGAATT
ACAACAAAATTATCAAGGtaaatttgccttttttgaaacttttttcattg
CAGCTAAAGTgtatctcaaaataatttgcagctgagaaaaaaatggctgt
aacttttgtctcagccatttttgtctcattTTTGACTTTAGACCAAAATT
GCTGTCGACTATGTGCAAGCGAGGGTTGCTTAGACACCCTGTATAAAACA
GGGTGATGCAGAAATTTCTAGTCTTgatcacagacctctacaaaacaaAC
AGCAGTATAGGAGCACGGATCCGTTTCAAAAAGCTTCAGTTATAATTGAG
CATTTTTGTACGGCATTCGAAAAATACATTTTCAGGTGAGAAAACCAGGA
CTCGGAGGGATGTTGCAAACGATGAAAATGAGGATTGGTATTCGTTCTTT
GATCAACAAAAACTTATCAAATTCATACAGAAGCAATCCAATCAAACAAT
TTACAAAGAAGTAAACCAAATCTTGAAACATTCCTGCAGAAAAGTTATGT
AAAGATTTAGTCAAATGTGAGAAAGGTAAAATGTTTTATCGATCTAAACT
TATCGAACATCGACCTCTTCCCAATATATGTAAGTTCTCTATAGACAATT
TCTCGTAGACCCGGTAAGACCCCATCTCACtgacaaaattggcaaaaata
cgGGCCCCAGAGGAAAATATTTGtcctcactgaaaataatcaaataaata
aacccTCTCTGCAAAGTATTGTGCTTTTTTTCCATTCCAGTCagtctgac
ttgaaaacaatggaattcaaatccccagcaatGAATAAAACATGGAATAT
CAATAAACTCAATCGAGTTTTTTTTACCCccattggctgaaaaaatccta
ccaggtctaTGATAAGGAACTGTCTATAGTATTTAAATTCTGAAGATGTT
AGTTAATTTCTCTAGAAAAGTGTGAAGATGAAAGGAGAACAGTGGTTACT
GAAGACAAAACTGGCAATGGAAAATCAAGGTGTCTTCAAGGACCACCAGG
GCCTCCGGTAAGATATCTCTACAAGAGAGAAggggcgaaaataaaaaaga
tttttctttgatGAATAATTTTAAAGTTGAATTATTAAAGTGGGAGAGTG
GAGCTTCTACAAAAGAGCTTCTGGGTAGAGATTAAAGGTTGATTCCTGTG
CAGATTTAGAAAGGTATTAGGGTAAATTCAAATTGCATTATAATGTTGAC
TTTTTAAGTAAGTTTGAATAAGTTTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055655-exon-scaffold_255-1491911889:66591..67207 | TCONS_00055655-exon-scaffold_255-1491911889:66591..67207 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1510915933:66591..67207 | TCONS_00055655-exon-scaffold_255-1510915933:66591..67207 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1575043694:66591..67207 | TCONS_00055655-exon-scaffold_255-1575043694:66591..67207 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1491911889:67526..67715 | TCONS_00055655-exon-scaffold_255-1491911889:67526..67715 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1510915933:67526..67715 | TCONS_00055655-exon-scaffold_255-1510915933:67526..67715 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1575043694:67526..67715 | TCONS_00055655-exon-scaffold_255-1575043694:67526..67715 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1491911889:68106..68419 | TCONS_00055655-exon-scaffold_255-1491911889:68106..68419 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1510915933:68106..68419 | TCONS_00055655-exon-scaffold_255-1510915933:68106..68419 | Clytia hemisphaerica | exon |
| TCONS_00055655-exon-scaffold_255-1575043694:68106..68419 | TCONS_00055655-exon-scaffold_255-1575043694:68106..68419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_255 | supercontig | scaffold_255:66591..68419 + |
Blast
The following BLAST results are available for this feature:
|
