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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055674 ID=TCONS_00055674|Name=TCONS_00055674|organism=Clytia hemisphaerica|type=transcript|length=411bp
TGTTTTTGTAAGAAATGCTTTTCAAGGAACTCTTTTGTAGTATAACATAC
GCCACATTTAttacatttaaaatatttgcttGGTGAATCATTGGTTCGGC
TCATCCCATTTGCTGCTCTACTTCCGGTAAATtgtttaccacattcttga
tcTTTTCCTGTATGAGATCTCAAGTGAATGTTTAAGCACGATTTGTAAGT
AAaggatttaccacattcttcacattgAAAAGGTCTTTCTCCTGTGTGAG
TTCTTAAATGGACATTCAAGTTATATTTTTGCGTAAAGTGTTTGCCACAA
ACAGCATAATTTAGATTATTAATTAGACGATGTTTTTGAACGAAATGTTG
ATCAAGGAACTCCTTTGATGTATAACAAGCACCACAGTTATTacactcaa
aataattattg Run BLAST on NCBI transcript from alignment at scaffold_256:22016..41343+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055674 ID=TCONS_00055674|Name=TCONS_00055674|organism=Clytia hemisphaerica|type=transcript|length=19328bp|location=Sequence derived from alignment at scaffold_256:22016..41343+ (Clytia hemisphaerica)
TGTTTTTGTAAGAAATGCTTTTCAAGGAACTCTTTTGTAGTATAACATAC
GCCACATTTAttacatttaaaatatttgcttGGTGAATCATTGGTTCGGC
TCATCCCATTTGCTGCTCTACTTTCGGTAAATtgtttaccacattcttga
tcCTTTCCTGTATGAGACCTCAAGTGAATGTTCAAGCACGATTTGTAAGT
AAaggatttaccacattcttcacattgAAAAGGTCTTTCTCCTGTGTGAG
TTCTTAAATGGACATTCAAGTTATATTTTTGCGTAAAGTGTTTGCCACAA
ACAGCATAATTTAGATTATTAATTACATGATGTTTTTGAACGAAATGTTG
ATCAAGGAACTCCTTTGATGTATAACAAGCACCACAGTCATtacactcaa
aataattcttggaaTTATCGGCGCCTTCTTTTATTCGTTCCTTTTCGCTT
TCTACAATCGAACTCACGATTTCTGTTAAATAATCAGTATTTGACGATTC
TTCTGCAGCaaaggttgaaatttcatcaaattcaattttgataTCAATGG
ACGAATCAATTTGCAGACTTGCTGTCGTAGCATTACCATCAATACTAACA
AAATCATAATCCTTCTCCTCGATTTTGACTTTCACGGTGTCCAACTCATT
CCCAGCGATATTTCTATTCTCAATATTGTTTACATTCtcaatttcttctt
caaatttgAAGCAAATGGATTCAATATTTTCGTGAAAACATATTTGTTCT
TCTTGTTCAACTTTAATTATTTGTTCCATATCAATAAAAGGTTctcattt
gtttgttttaaattttcctaaaaagaaaagttttacaaTAAGATTAAACA
AGctatacttttatggacctacctgtttataaaacgaataataaaagttt
attgaagaCAATGCAGAAACAAAAACTGAatgatttaaaattttgtaaGT
TGGGCCCAAAAATTTTGtcgaaaaatgaacttttccaTAATTAGCACAAT
TTAATTTTACGTCATTGTACAAAAAactaggaaaaactaatgaacaaatt
taacaaagtccaaaaacccctaattttgggcatggccaaaattttttttt
tctcgaaaatcagaCTTCATCATATTTTGGTAAtaaccattttgcacctt
tgtatcaaaaatcacaaaattttcctatgattcaatcccgagaaaagttg
gtaacagatgaacggacgaacggacaaacacaggttaaAAGTTATAAACT
AAATTCATAAATGGGTATATCATATAAATCTGCATAAGTAAGTTTTATTC
CTTTTTGTGAATTCAATTGTGATGTCTTGAGAGATGTTTTTTGCATCTAA
ACGTTTTACCACATTTTTCCTCCATCATGAGTTCTCGTATAAGTTTTCAA
GGTACCCTTTTGCATAAAGCATTTACCACACTATTGACattcaaattgtt
tttctcCTGTGTGAGTTCTCAAATGTCTTTTCAAGGTACCCTTTNCCTCC
ATCATTTACCACACTCTTGacattcaaattgttttttcctGTGTGAGTTC
TCAAATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTGCCACACTCT
TGACATTCAAATTNGaccccgagaaaagttggtaacagaacGGACAAACA
GACAAACACAGGTTACAATTTATAAACTAAATTCATAAATGGGTATATCA
TATAAATCTGCATAAGTAAGTTTTATTCCTTTTTGTGAATTCAATTGTGA
TGTCTTGAGAGATGTTTTTTGCATCTAAAAGTTTTACCACATTTTTCCTC
CATCATGAGTTCTCGTATGAGTTTTCAAGGTACCCTTTTGCATAAAGCAT
TTACCACACTATTGACATTCAAATTGTCTTTCTCCTGTGTGAGTTCTCAA
ATGTCTTTTCAAGGTACCCTTTTGCATAAAGCATTTACCACACTCTTGGC
attcaaattgtttttctcCTGTGTGAGTTCTCAAATGTCTTTTCAGGCTG
CCTTTTTGTGTAAAGAtcttaccacattcttcacatttaaaattattttc
acctgCATGAATTTTCAAATGGATAGCCAAGCTGCCTTTTTGTCTGAAGT
GTATACCACATTCTTCACACTTGAAAGGTTTTTCTCCAGTATGagttttg
aaatgttctttcaaGTTCTTTTTTTGGGTAAAGagtttaccacattcttc
acacTTAAAGGGCTTTTCACCTGAATGAGCTCTCAAATGTGCTTTCAAGT
TGCTATTTTGAGTAAACTgcttaccacattcttcacatttAAAACCCATG
ACTTCACCATGTACTTTTTGTATATGCTCATTAAGGAACTCCTTTTTGTC
GAAACAGAAACTACACTTTAtgcatttgaaataattttcatttttccttt
ctTCTTCATCTATAACAATTGAACTTGCCatttccattaaattttcagTA
TTTGACAAGTCTTCTTCCGTAGATATTGACAGATTATCGGAGGTTTCCAT
GGTTAAAACTTCATTATCTTTAGAAATTAAATCAGGGATCAAATCAATCT
GCAGACTGGTCATATCTGTTTTTTCCATATCTAAAGTGGTCCTAACAAGA
TCATTGAAATCCAAAGtctggtcttcaaaatcaagTTCTCTCCCATTGAT
TGGTTCATTCCATGTAAAACTGAAATTATTTTCCATGTTACAGTCTGtga
cttcattttcaatctcCATTGTCAAGACTGGGAgtttttatcttgatttt
ttttctaaaaggaaaatgaaaaaaatgttaagaagaTAACTTTACTTCTT
TATGAAGTAGATATTGATAAAGTAGATATCTTTCCAACTCGCAAAATAAT
TTAAACGAAGCTATGTTTTTCACGAGGCTTGATTGAAATTTTAGTATCGC
AAATGCCTGGGATTTGTAAGGTGCATTGtccattatattttattagAGAA
AGGAANCATCTTTCCAGCTCGCAAAATAATTTAAACGAAGCTATGTTTTT
CACGAGGCTGGATTGAAATTTTAGTATCGCAAATGCCTGGGATTTGTAAA
GTGCATTGtccattatattttattagAGAAAGGAAGAAAATACATTGTAA
TGAATTATTTGGAAAAAAGTGTTCAAAAACATATTGCAGAACAATTGCTA
TTTAGAAAAATCCTGAGCAAACAAGCAATTGTTACCTAAGATTATGTTGT
CATTTTTTTATTGTCATTATGACATATCAATATCAAAAGCTAAAGAACCA
AGTATTCAAGaattgtttgtaaaaaagtcctAGACTAAAATATGAAGATT
AAAATATTCTTCTGAAAAAgtgaaatgttgaaaataacaTGTTACAAATC
TCCGTCCACATACACCAGTTTACATAGTAACTATAAATGTGTATATTTAT
CTCAAAAACAAAAGCAgaaacattttccacattttccacATTCGGATGGA
TCCAAACCAGTATGAGTTCGGTCATGCAAGGCTAATAAAAACATACTtgg
taaatattttttacattttgcaCATTGATAAGTTGTCAACTTTGAATCGC
ATTTAACTGCTATATTATCACAAATGGTATCCGCAACATTTAAACTGGAT
TCTTTAGGTGATAAGGCTTTTGCTATCATTGTACAAATGGTATCCGCAAC
ATTTAAACTGGATTCTTTAGGTGATAAGGCTTTTGCTATCATTGTACTTT
CATCTTCCCCAATATCCAAGGTTAGCATTTTCTTAAGCAATAAGTCACTT
TCATGCTTTACCGCACAAACAGaatcattattttcttttttatattcttC
GGGATTTTTGTCCATTATTGTTATACAATATCTATCTTACTAAGCTTTAT
ATCTACGTaaaggaaaaaaatagaaatcagATGTTATGATTTACTACGAG
GTAGAAGGGATGACCAGCACCCCCTATTGAAAAACCTAAAAGTCTGTTTA
TAGGCCTCTTAATAACTCAAGGGATAACCAGCTTTTTTTAATTCCAGATA
CCTTATTCCTTTTTAcgtcggcccttattacgccgcagcctaattttggg
cttacaccaattagggccgttaaaaaataacatcaaaatttgtaaaaatN
ctgtttgtaaaaaagtcccAGACGAAAAATATGAAGATTAAAATATTCTT
CTGAAAAAgtgaaatgttgaaaataacaTGTTATAAATCTCCGTCCACAT
ACACCAGTTTACATAGTAACTATAAATGTGTATATTTATCTTAAAAACAA
AAGCAgaaacattttccacattttccacATTCGGATGGATCCAAACCAGT
ATGAGTTCGGTCATGCAAGGCTAATAAAAACATACTtggtaaatattttt
tacattttgcaCATTGATAAGTTGTCAACTTTGAATCGCATTTAACTGCT
ATATTATCACAAATGGTATCCGCAACATTTAAACTGGATTCTTTAGGTGA
TAAGGCTTTTGCTATCATTGTACAAATGGTATCCGCAACATTTAAACTGG
ATTCTTTAGGTGATAAGGCTTTTGCTATCATTGTACTTTCATCTTCCCCA
ATATCCAAGGTTAGCATTTTCTTAAGCAATAAGTCACTTTCATGCTTTAC
CGCACAAACAGaatcattattttcttttttatattcttCGGGATTTTTGT
CCATTATTGTTATACAATATCTATCTTACTAAGCTTTATATCTACGTaaa
ggaaaaaaatagaaatcagATGTTATGATTTACTACGAGGTAGAAGGGAT
GACCAGCACCCCCTATTGAAAAACCTAAAAGTCTGTTTATAGGCCTCTTA
ATAACTCAAGGGATAACCAGCTTTTTTTCATTCCAGATACCTTATCCCTT
TTTAcgtcggcccttattacgccgcagcctaattttgggcttacaccaat
tagggccgttaaaaaataacatcaaaatttgtaaaaatggctacttatgc
ttcaaattagtaaataaggactaaaatttacattaaagtgtcatttttca
gtagtaaactgttgaaaattccatcgaaaatcactaatttttaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTT
GCATTTAAAACTTTGGCCACGTTCTTTTGTGATAAGATTATTTTTCCTTG
TCTTGGGAATAGGATTTTCTACTTGTAAATTGGTGGCATCTGTTGTTAAG
TTTGTTGGTAAAATTATTTCATCGAGTTTCattttaatatcaaaagaatC
TGGTTGATGCTGAGAATCGGATACCTCTTCGAAAGGGAAAAAGAATTATT
TCCCTCTTCAATCTTTATCTTCAATGGTATATCATCATCTATGTTTGCAT
CGACAAATTCATGCTTTTCCTCTCCTAAGAAATCTAAAAAAGCATCCTCC
GGACCAATCTTGATGGAATTGATGGAACAGAATTCACTTTTTGTTCGtct
ttgatttctttattcattgtatatagtttttattttgttttctgtatttt
tcctataaaacagaaaaaaaaaattgcaattaatTATCTTAACCTATAAA
CATTAATCTTATGAAACCCTTTTGACAGCATAATTCTCAATCCTCCGTAT
AAAGCTAAATACGTGCTCTTGAATTCAATTTCAAAGATATTGTATTTTAA
AGACAATTTGtctaaaagattttcaattatTTAGTAGGGAATTACATTAA
ATAAAAAGACTCACAAAGTGCTAAAGAAAATTCGGGAAAAATTGAGCCAA
ATATTGAGAAACAAAGAACtgatttataatttttatcacGATTTTTCATG
CTTGCAAAATGTTAATGCAATGCAGTGTATTGAAGATTTCATTCTGAGTA
ATCCAAAATCCACTGCATTGCATCATAGTCACAAGAAGAGAGATAGTCTG
GANCatgcattttaaacaaaaactaacCAAAAAAATATTACGCAAAACAA
AACCAACAAATTTTAACAGCTtcaaaaaagtatattttaaaaGATGGATA
ATATTCTCATAAAATTTCAATATAACAAATTATCAACCTTTAATTGACAG
TGCTAATAACAATAATGACAATTAAAAAGTGTAAAAcaattatgtacaaa
atataaaaatatgacaaaatatAAAAGTAGAAAACGTTCTAAGTACGAGG
TTTCTTGGGGACAGGCTCTTCGCTGATTGACCATCGTgttgttgtatttt
tttcacaatttgtgCCATTTGGTGCAACATGTAGTGATGATTTTATAATG
TTGTCATTGATTCGTACTTGTTGGTGGCTTGGATTATCTTTCCTTCTTCC
AATCGATCGTTGCCAACCAAAGTAGTTTTCTAAATCGTCTTGATTGAATT
GTTGGTCAGAACATATTTGATTCCATTCTTCAAAAGATACTTGGTACAAT
GGATAAGAGACATGGTGGAAATCTGAAATCCTTCGTAAGTTTGCCAGCTA
ATAAACATTCTACCTTTAATTTCAGGTTTCATGCCTGGGTGTGTGTTGTT
TATCCACTTGAGCCAATCttgaaagtatttcaaaaatttattctcCAGCC
AATCAAAACGTGCATCTGTTAACGAGTCAAAAGGCTTCTGATCAGGTTTG
ATATTTCGTTCATGTTCATCAGGGTGTCTAACATTACCACAATCAAACCA
TTTGTCAACTAACTCACAAAAAACAGCTGTTTCTTGGGTGTCGTCCTCGC
CATATTCTTTAAGTGTAGTGGCTACTTTAGCACTCAACAATTGTGCAGCC
AATTTTACATTCATTTTTGAATAGCTTGTCAGAAAAATATGGTCTGGAGT
GATTTTATTGAGATGTCGGTAGCAAGATAAAGAATCCTCCATGTAGTAAT
CTTTTATGTGTTTCCATAAAATGTGTCCACTATCTTTAAGCATAAATCTA
TTGTGTCCTTCAGATCCAGAGTGCAATAAATTATTCCTAAGAGTTTTCAA
AAGATGAGGTATATcagagaaaaaataaatgaaggTGTTCTCATCTTCAG
CGTAGATGTTTGGTGTCCTATAAACCCCTGTGTCTCCAGAAACAAAGCCT
TTgtgcattttgaaaaagtttctatttggTGAGGCCCCATCAGAAGTTGC
TGCAACAACACGTAAGTTACAGGACATCTCAAGCAAACATACAGCCTTCC
AAAATAAAGGAAAGATTTGGAATGAAGTTACTCCTTTTGTTGCAAATGTT
GCAAAAGAAAATGATAGTGGGTTGATCACACTTTTCACAAGAAAAACCAA
AACATGTGTGGCAAGATCATCACAGTTTTTAAAAGTAGCTTCATTGAGAG
ATTCATCACCAAGGTCAACATAACCAACAAGTTCCCCAGTATGCTTATTC
CATACCAAATCTTCCTGGATTTTCATTTCGTCAAACGATAGAACAACAAA
GCGCTCTTGATTACTGAATTTTTCTGTTAACTTAGTCAATCTCTCGATAG
TTTGCTGATTAAAACCGGTCTTCGGACGGATGTAATTGCGATAGTCTCTC
AATGTCCTCTCTGAAGGAAGGATGAGTGCCCCAGTTCCATTTTTCTCAtc
ataacgaaaatatttgtagGCTGAAGGTGACTTGGCATACAATGTTAGAC
AATATTTGATAATCATTGGATGGTACCTCACCTTTAAAAGTTAAATGTTT
TGGAGcttaatttcataaaaaaaatttttaagcaaaattcaTGTATGCAA
TGCAAATGACAAAATTCTAATCTTGTTTGATAAAAACTTGAACATGCAGG
TCTAGATAGAGTATAGCTATAATAAATAATCCAAAAGGATACTTTTATCT
GAAATATAACAGCAATTATTGCAAAAATAACATAACTTACTTGAGTTGGG
TGTTGCTTTAAATACTTCATTTGTTCTTCccaaaacaatttcataaatgg
AGAAATCCTGCGTTGGTCAGTTTGATCGAATATAGATTTTAGATCTTGAT
GTAATTCTTTGTTAACAATCACAGATTTTCGATCAAGTTCATTTTGTAAA
TAGCTGATCTGGTTTGTTAGATCTTTATTTAGGGCCCTTTGTTCCAGGAT
TGTCGCTTTCAACCTAGCTACTGATGTTGCGGTTATAGGAGCTTTAAGTG
GAATGGGTTTTGCTTgcatattttgcttcattttcaaGGCATTCATTTCC
TTCTTCTCCAAAGAAGTACAATGCGTACAAATCTTAAGTTGGTGTCCAAC
TAATAATGAGCAAAATGGGCTTCTGTAAAAGTGTCTTTCAAcaagatttt
caaaagcatCAGGAAGGTCTGATTGTTTCACTGTTTGTAGCTTTGAAATT
GTGTGATGCCTGATTGCATCGTTGTTAACCAATTCCAAATTACTGATTCC
CACACATAAATTCATGGTTTCAAGCTTTGTTAAGATTGTGTTGATTGGCA
TAAGCATTATAGAAAAAGGGCAGGTGCTGAACCATCCAAAAACTCTTAAT
GTTACCTaaagttaaaaatataatttacgAATGATTGGTCATGCATGGAT
TGATCATGTACGTTAGCGTATAATATGATTGATGAAtaggaaaaatttaa
aaaaatatattttgagcaTGCATGAATTTAACTGTAGAAGCGTGCAATAT
ATCTTCATATATCTTCAATATAGTTCATAGTTGTACAATACTCTAAAAAG
CCTCTATATATAATGTACATTTTAACTGAATACTGAATACCTACAAACTC
ACCTTTAAATGACAGTCAACGACTAAATCAAATTTTGGAACTTGAAAGCG
TGAATCAAAAAGACGAAAAGTTGAGAACTGATCTGATAATGAATATTGCC
AATTATTGTTGATGCTCATTGATGCATTCTGCAAGAATTGACGATATGTG
TAAATGGAAAAAGTTTTGATAGATGTGGATGGGATATTTGCAGGTTGGTG
GTTTTGTTCTCTTTTGACAATGGAATTAATTGGGCGGGGAACGTAAGTTT
TGTTTGACATGCCAGGGAGGTTCAATGTTGGAATTGCATCCTCCTTTGGT
ACTTTTCGTGTTGcatcttaaaatttaaaatcaaaaaattttcaaattaa
aaaatacatgcCCTCTTATATTAGTAGCTCCTCAATCACTATGATATAAT
ATCTAACctaataatgttgaaaatttatttctatCTCTTACAAAAATTAG
ACCTGAAGTAAAACATgcattttaaaatctaatctaatttctttaaaatt
aatttccatcttttacaaaaataaGACTTCAGGTGAGCATGCATCAAAAG
TAGctaattaaacaaaaaattaaaaaataaatcatgctTTATATACTTAC
AGTGATAAAGAGCATCAGGTTCGTAGTGTTTCTCACAAACCCAAACTTTG
CTTGATTCAATCTTCTTACTGAATTTCTCATCGACAATTCggcctttcaa
aatttgagccaaaaagtTTTGACGCCATTCAGGCTTTGTAAGTGGTGGGA
TTTTGAATAATCCATACTTATTTTGATTCCGACAGATCCCACAACCAACG
ATGGCACAATTTTCTCCAGGCATGAGCCTAAATTTTGTTAGATGTAAAAT
TCACTGAAAGGGAAAATAACAAACCATATAGATACTATCAACCTAAATAT
ACGTTACTCCTTCATTTTGTATTTACTTTTCATGTTTATAAAATTATACA
TGCCAACCTACCATCAGCTGAGTACCCTCCCTGCCATGCATAAACTTTca
actttaaaaatttgatcTGGAAAGtaaaaaactataaaagaaaATACATA
AAAGTTTCTTCTGGATATATATGATCCCTCCCAAGTCAATAACTTTTATT
AACAACTCCAAAACAGGTGAGCTAATAACAAAAACACACATTTATTTTGC
AAAAGACAACCTCCTCCAAGCAAGAAATCAGccatatttctttacttttt
gaagGTCCGATGCCCTGGGCACTAGTATGTTCGTAAACAATANaaatcag
ccatatttgtttactttttgaagGTCCGATGCCCTGGGCACTAGTATGTT
CGTAAACAATAACATcggccaatcagattgcttagCGCTTCCAGACTATC
TCTCTTCTTGTGACTATGATTGCATGGAGATTTCAATTGAAGGTTAtata
attctttatttctagATTTTGTagaattataattttttggtcctaaaaaa
taaaataaagaactaCCTTGTAAAAATACTCTATTTTTCGCATCATATAA
GCCGCACATAAAATATACTCAATACTTCGAATAATCCATTTTGTTTATCC
TCGTCTCTTCGTTCTCGACAATCAAACTAGCAACATCCAATAAATTTAGA
TCTTGATGTTTTTTAGTTGACAATTCTTTGGATTCTCTTTCTCCATACAA
CATAACTATTCTTTCGGAGTGGCTTTTATCATGACCAGTCAAATGACTTA
AACTGTTAAAACATTTGTCACATTTGTTACATCGGAAAGGTTTTTCTTGT
TCTCCAATTTGAACATGTTTTATTCGTTTATGAGTCTTCATGTGAAGATT
CAAAGTATCTTTTCGGGAAAAAGAATTACCACATTCCTTACATTTAAATG
ATTTGATTCCATTGTGTATGTTTGAATGTCGTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTCCGAGCCTTATGAAACGAATTCCTTGAATAAAGTCGGT
CGTGGAATTGTCATCCTTATACACAAGTCAATAAAAAACCTTGTTCTTGA
AGTGAGACCTACCCGGTACCCATGATTTTCAAGAAGTATGCATGCTAGAG
ATCAAGTTGGAAGGATCAAACTGTTTACTCTTTGCATGTATGTATAGGAG
TCCTATTAATACGAACACATCAGCCAGGAATAACATTTTATTGAACCTTC
TCTTAAAGGATATTGCGTTCAACAACAAAATTAATATACCCACAAATGTA
TCGTCGGTGATTTCATCTACAAAGACATCAACTGGGAAAAACTGGTCCAC
TCCTCACAACGAAACAAAGAAAGATGAACAATTTCTGGACGCACTAAGAA
ACACCTTCTTCTACCAACACGTTGATGAACCAACCCAAGCTAGAGGGACG
GACACACCTTCCCTTATCGATCTGATTCTGACAAGCGAAGGCTTTTATAA
GATTAGGGTTCTAATTAGGGATCTCACTGGTGTCCGGGCGAGGTCCGCTT
TTGAACAATATGACCGCCGGGTCGCTTCGACCGCCAGGCGTTTGTTTCGA
CGGCTAGATGCTCCTTTCGATGGCTGGTTGTTCGTTTTGACGGCTGGACC
ATCGGGTGATCATTTCGACGGCTGGATCAACTATACACTGTTTTTCATTC
CATCCAACGACTTGATTCTCTTTATTAGGTTGAATTTTGATAGAAACAAA
ACCCATCTCGTatttctttcttaaaacatTTATTGACTTCCTTTTTGATa
ctttaattgtttctttattttttatctgttaaagaaaaagaaagaattag
TAATTTATTCCCAACGACGACTCGATTTTCTCCATCAGTTTCGATTTTGA
TAGAAACAAAACCAACCTCAtatcattttgaatcatttatTGCCTCCTGT
TTCATATTTTAATTGCTTCGTTTTTTCTgtcccccggacagcaggtctgt
CCCCCGGACAGCGGGTCTAACCCCGCGGACAAGTATTAGTTGACCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCgt
tgatttttcactacccgCAGACACTTTCTCCTAAACCCCCCATgcacgaa
cattttctggaagagcccaatgcatCAGGAATGTTCAGGAATGTCAATTT
TCATGTTTGGAATTTTAATGTCAGTGAACAAGTTATCATTTTTAAATTCt
catataaaataaataaaattcattatttACACATGTCAACATTTttaaca
taaatataatatcaatATAGTATTAGTTTTCAACTCTAAACACCTTAACT
TCGAATAGAGATgaaattatcattaaaaaaaacagcTACTGCATTTTCTT
TAGTGCTCTTAGatgaaattaagaatttttaaaattgttcttccAATGCT
TTGCTTACATTTTATCACGTTATCAAAATATTAATATTCAATCATGAACa
ttagtattcatgatatgcaccattgcaatgtcttctgacattacggacct
aacagctgattggttgaaagtgacgtaaaatcaacCAATacgcaaccaat
cagctgttgggtccgtggaagacattgcaatggtgcatattatgaattaa
ggaaattttccacccaatacgtcacttaaacaatagaaaaagtgacgtat
tgggtgggacaaaaaaaaacagaaaagttgtataatttcgtgtgaagtca
ttgcagtagtgtatatcatgaatattaACCGTCCAAAGTGAAACTACATG
CTATCAATTGCAAAACTATACGATAAACTAAGAAGACACTAAACTGGaaa
tagtaaattttttttcatctgtGTTCAtacttaaaaacattttagaaaat
ttcaacaagaaaaagcatttaaaatgaatttaGTAGAATAGATtaaaatc
atttctaatttaatttttgaaaacaggaAGATATTAAAATTTACCAGGTA
ACAAAAATATACCAGACGTTTAACcaactcgtcaattttaattctcCCCT
CTTTAACTGCTTTGTTTGTTATCCTGATGGTCATTAAAATTCTGTTTCCA
TGCAAACAATTTTTCTAAGTCTACCTTTTCACGTTGAAATGGCTTAGCTT
CATGAGTTTTCTGATGTTTTGTTAGACTTTCCACATATTTGAAACGTcta
ccacattcttcacatttTAATGGCATAACTCCACAAAAAGACTCNCTACC
TTTTCACGTTGACATGGCTTAGCTTCATGAGTTTTCTGATGTTTTGTTAG
ACTTTCCACATATTTGAAACGTctaccacattcttcacatttTAATGGCA
TAACTCCACAAAGAGCCTCTGTATGACGGGTTAAACTTCTTTGTTCTGCA
aagcatttaccacattcttgacatttatATGGTTTAATTTCACTGTGTAC
ATTTAAATGTCGTGTTAATTTGCTTCTTTGACGAAAacttttaccacatt
cttcacacTTGAATGGTTTTTCACCAGTGTGAATTCTAAGATGATCCTTT
AGGTTTTGCTTGCTCcgaaaacatttaccacattcttcacatttACATGG
TCTAATGTCGCTGTGTACCATAAGATGCCGTGTTAAAGCACTTTGACAAg
gaaaagatttaccacattccttACAATTAAAAGGTTGTCCTCCATTATGC
ACCTTAATAAGATGATTCTTTAGAAAATAGTAGCTTTGAAAAGATTCATC
ACATTCTTCGCATTTAAAAGGTTTAATTCCACTATGTTTAATGGAATGCT
GTGTTAGCTCGTGTTGAAAAggaaaacatttaccacattcatCGCACTTA
AAAGGTTTTTCACCAGTGTGTAATACAAGATGCCTTTTTAAACTGAATCT
CTTAGTGAAAGTCTTATTAAGGCCCTCTTACACGGAGCAATAATCAATTA
AGATAAGAtaagaatttattatttttacattttcatacaCGTAAAGATAA
CAATAATCAATATCTTTCTCANAACCTTACAGTCAACAAGGCCTTACACT
TAGAAGTCGTGTGTTCAACTATCGTTTACCTCGTTTCCGGAGAGTTACTG
AAAATGCACTTGGCATTTTGGCAAGTAGATTTTGAATCCTTTTGAACAAA
ATCCCACTTGATCCTGACAAGGCTGTAACGATCACAGTAGCTTCACTTGT
TATTCATAATATGCTTATGGAACTCTCAACCGACTCTTATACACCAGAGG
GCTTTATCGACGAAGTCAACGAAGAAACTGGTTAAGTAACTGAAGGAGCA
TGGCGTGAGCAAAATTTAGCTGACTTGGCTTTCCTCGAATTGCAGCAAAA
TCGAGGAAACAACGCGTATAACCGTAGCTAGCGTAGTTCGAGAAATGAAC
TTGTGTCTTCTAGNAGAGAAAAAGTTGGCTGTCAAGGGCGTATTAGCCTA
TTAGTGACGGGGGCTTTTATCGAAATTGTTCCTTCTACAAGGCATTAGAA
AGCGGTGATCTAGGTATTCCCGAGCCAAGATTACTACCAAGTTCTAACGA
TCCCAATTACATCAATCATAAATCAGTACCTGTTCCCTATGTATTTGTTG
GAGATGAAGCTTTTCCTTTGGGTATTCACTGTCTCAAACCTTACAGTCAA
CAAGGCCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAA
TAATCGGAACAATGGGAGTTCGACGTCATCAAGAtaatgattttattatt
ttaaactTTGATACACGACACAATAAGATAAGATTATCGTTTCGTGATTA
TTTTAAATCTTATCTTAATTCATTATTGCTCCGTGTAAGAGGGCCTTTAC
ATATTTCACATTTGTGATTGTTAACACTCTTTTTCTTTCCtggagttttc
tttttttcgatCACCGAACTGGCAACATTCGATGAATCTTGATTTCTATC
AGCCTGTTGTGAATCATCACAAGGAACAGATGATTCCGAAGAAAATCCTT
TTGAATCAACTGTTTCACCCGTTTTATCATTAATATCAAAAGAATCTGAT
TGAAGTAAAAGATATGGTACCTCTTCATTAGGAGTCAAAGAATTATCTTC
CTCTTCAATTGTTATTTCTAAGTAACTATCTTTAACGCTTCTGCCAGTAA
ATGAATGCTCTCCTTTGCCAACATATTGATTCTCATCATCAGGTTCAATT
TTGATGGAGACCAGATCCatatcattaactttttctgtaACATTTTTTGA
CTTCGTTcatattttaattgttttgttatttttgtatctgttgaaaaaaa
aatagaaagtgtTAGTAATTATATCACAGTAAACTATTATATCATAGTAA
ACTTATATTCCAAACGAGACGTGCTCTCATTCAACTTTGAAATAACGAGA
CGACAAACAATACGGTTGGTATTTTACTGACcacaatttttccaaaatac
tTATTTTCCATACAACCCCACGTCTGATTTGGCTTTTTGCCAGCAAAACC
CCTACCGGGCGACCCACGcaaaaacataaggctttggTAGCTAGCTTCGC
TCATAACAATAAGAAGTAAATGTCAAAAAGGGGTATCATATCTAAATATT
TATACTGAATGTTTTTGAGAAACTTTGCAGGTTCACTGTTTCCCTATCTT
AATTAAAATACactcttatttttttataagcataatgtttataagcatac
ttaggctcaaataCGGCAGaaaatgctaagcatacctccaagcttaaatg
caaaaaaattgtacagATTTTCTGaaacgctgacctttttagggttgttt
tttaaagctgtttgagcTTTCTTGGAACAAAGATTTTCACCTGCGGcgcc
aaatttcaaatttcatattGAGCCTTGAcccgattttcccgtatgcttat
aaaaaaaagaatgtagCGGAAAAAGGAATATCCCTATCGTATTTTGCCTT
ATGTTTGGTTTGATAcgtcatttttttttcacttttggagtctttcaaaa
gtgaattttgaaattcaagaacttaaaatttttagaacgaatgaaccaaa
tttaaaacgTTATACACTAAAGTTCATTTTTGGAGGTGAAAACTTTAAGA
CGTCATCTATTAAAAGTTATTAAGTGATACGTTAAAGAAGGGAGGGGCTC
GAACGATAGAGTAGTGTTTACACTCTaaataaatttaataattttaactt
ttacaGAAATCCATTCtggaaaaaatgttcaaacgACCCTCAAAAGTAAA
CTTCTAACAACCGTTATTGAGTTACGAGGTGAGTTACGTTACGAAGTTTT
AACTCTAAACTActcttttaattttaatttaatttaatgagGTTTCTATG
TTTAATGAGACTATTTTtccatttgaaatattttataccaCATACATGAC
TTTGTTGTGGAAACTGTTTACCACATTAAGAACACAGAAAGGGTTTTTTT
CTCCCTTAATACACGCTTGCTCAAAGAAGACTCACCACATCCTTAACATG
ATTTGATTCTTTTGTGTACCTTCTGACTTTTTGTGGCAAATTTTTCACTG
CAATCTTTGAATACAAAAACCTTTTCTCGTTTGTGAGTTTTTAAAAGAGT
AGCCAAGTTATATTTTTGTGTAAATGATCTACCACATTCTTTACACTAAA
ACTTTGTGGCATTACTATGTTTTTGTAAGAAATGCTTTTCAAGGAACTCT
TTTGTAGTATAACATACGCCACATTTAttacatttaaaatatttgcttGG
TGAATCATTGGTTCGGCTCATCACATTTGCTGCTCTACTTCCGGTAAATt
gtttaccacattcttgatcTTTTCCTGTATGAGATCTCAAGTGAATGTTT
AAGCACGATTTGTAAGTAAaggatttaccacattcttcacattgAAAAGG
TCTTTCTCCTGTGTGAGTTCTTAAATGGACATTCAAGTTATATTTTTGCG
TAAAGTGTTTGCCACAAACAGCATAATTTAGATTATTAATTAGACGATGT
TTTTGAACGAAATGTTGATCAAGGAACTCCTTTGATGTATAACAAGCACC
ACAGTTATTacactcaaaataattattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055674-exon-scaffold_256-1491911889:22016..22122 | TCONS_00055674-exon-scaffold_256-1491911889:22016..22122 | Clytia hemisphaerica | exon |
| TCONS_00055674-exon-scaffold_256-1510915933:22016..22122 | TCONS_00055674-exon-scaffold_256-1510915933:22016..22122 | Clytia hemisphaerica | exon |
| TCONS_00055674-exon-scaffold_256-1575043694:22016..22122 | TCONS_00055674-exon-scaffold_256-1575043694:22016..22122 | Clytia hemisphaerica | exon |
| TCONS_00055674-exon-scaffold_256-1491911889:41040..41343 | TCONS_00055674-exon-scaffold_256-1491911889:41040..41343 | Clytia hemisphaerica | exon |
| TCONS_00055674-exon-scaffold_256-1510915933:41040..41343 | TCONS_00055674-exon-scaffold_256-1510915933:41040..41343 | Clytia hemisphaerica | exon |
| TCONS_00055674-exon-scaffold_256-1575043694:41040..41343 | TCONS_00055674-exon-scaffold_256-1575043694:41040..41343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_256 | supercontig | scaffold_256:22016..41343 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00055674 vs. Swiss-Prot (Human)
Match: ZN260 (Zinc finger protein 260 OS=Homo sapiens GN=ZNF260 PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 3.501e-24 Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = -2
Query: 15 FECNNCGACYTSKEFLDQHFVQKHRLINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKD----QECGKQFTGSRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKH 401
FECN CG ++ K++L +H H + CGK F+QK NL +H R HTGE+P++C+ CGK+F KS L H RSHTG+ +ECGK F+G + + K +KCN+CG + K++L KH
Sbjct: 164 FECNQCGRAFSQKQYLIKH-QNIHTGKKPFKCSECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKSNLTEHEKIHIG-EKPYKCNECGTIFRQKQYLIKH 294 HSP 2 Score: 78.1814 bits (191), Expect = 1.589e-17 Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = -2
Query: 15 FECNNCGACYTSKEFLDQHFVQKHRLINNLNYAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSCLNIHLRSHTGKDQ----ECGKQFT--GSRAANGMSRTNDSPSKYFKCNKCGVCYTTKEFLEKH 401
++CN CG + K++L +H H CGK F++ +L VH+R HTG++P++C+ CGK+F S L +H+RSHTG+ ECGK F+ + A + T + P ++C++CG ++ K +H
Sbjct: 276 YKCNECGTIFRQKQYLIKHH-NIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKVCGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKP---YQCSECGKAFSQKSHHIRH 406
The following BLAST results are available for this feature:
|
