TCONS_00055684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055684
Unique NameTCONS_00055684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055684 ID=TCONS_00055684|Name=TCONS_00055684|organism=Clytia hemisphaerica|type=transcript|length=1260bp
GTTTTCACGAAAATATTGAATCCATTTGCTTcaaatttgaagaagaaatt
gaGAATGTAAACAATATTGAGAATAGAAATATCGCTGGGAATGAGTTGGA
CACCGTGAAAGTCAAAATCGAGGAGAAGGATTATGATTTTGTTAGTATTG
ATGGTAATGCTACGACAGCAAGTCTGCAAATTGATTCGTCCATTGAtatc
aaaattgaatttgatgaaatttcaacctttGCTGCAGAAGAATCGTCAAA
TACTGATTATTTAACCAAAATCGCGAGTTCGATTGTGGAAAGTGAAAAGG
AACGAATAAAAGAAGGCGATAATTCcaataattattttgagtgtAATGAC
TGTGGTGCTTGTTATACATCAAAGGAGTTCCTTGATCAACATTTCGTTCA
AAAACACCGTCTAATTAATAATCTAAATTGTGCTGTTTGTGGTAAACACT
TTACGCAAAAATATAACTTGAATGTCCATTTAAGAACTCACACAGGAGAA
AGACCTTTTcaatgtgaagaatgtggtaaatcctTTACTTACAAATCAGG
CTTGAACATTCACTTGAGATCCCATACAGGAAAaggtcaagaatgtggta
aacaATTTACTGGAAGTAGAGCAGCAAATGTGATGAGCCGAACCAATGAT
TCACCaagcaaatattttaaatgtaaTAAATGTGGCGTATGTTATACTAC
AAAAGAGTTCCTTGAAAAGCATTTCTTACAAAAACATAGTAATGCCACTA
AGTTTCAGTGTGAAAAATGTGGTAGATCATTTACGCAAAAATATAACCTG
GCTTCTCATTTAAAACTCACAAGCGAGAAAAGGTTTTTGTATTGCAGTGA
AAGATTTGCcacaaaaagtcagaaagtaCACAAAAGAATCAAACCATGTT
AGGGATGTGGCGAGTCTTTTTCGCAAGCGTGTATTAAGGGACTATACTAG
AGAACACACACTGGAGAAAAAAACCCTTTCTGTGTCATGAATGTGGTAAA
CAGTTTTCACAACAAAGTCATGTATGtggtataaaatatttcaaatggaA
AAATAGTCTCATTAAACATACAAACCTCATTAAATTCAATTAAAATTAAA
AGAGTAGTTTAGAGTTAAAACCTCGTAACTCAATAACGGTTGTAAATAGT
TTACTTTTGAGGGTCGTTTGAGCATTTGTTTCAGAATGGATTTCtgtaaa
agttaaaattattaaatttaCTAAATTTATTTAGAGTGTAAACACTACTC
TATCGTTCGA
Run BLAST on NCBI

protein sequence of TCONS_00055684-protein

>TCONS_00055684-protein ID=TCONS_00055684-protein|Name=TCONS_00055684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
FHENIESICFKFEEEIENVNNIENRNIAGNELDTVKVKIEEKDYDFVSID
GNATTASLQIDSSIDIKIEFDEISTFAAEESSNTDYLTKIASSIVESEKE
RIKEGDNSNNYFECNDCGACYTSKEFLDQHFVQKHRLINNLNCAVCGKHF
TQKYNLNVHLRTHTGERPFQCEECGKSFTYKSGLNIHLRSHTGKGQECGK
QFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATK
FQCEKCGRSFTQKYNLASHLKLTSEKRFLYCSERFATKSQKVHKRIKPC
Run BLAST on NCBI

transcript from alignment at scaffold_256:19022..20281

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055684 ID=TCONS_00055684|Name=TCONS_00055684|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at scaffold_256:19022..20281 (Clytia hemisphaerica)
TCGAACGATAGAGTAGTGTTTACACTCTAAATAAATTTAGtaaatttaat
aattttaacttttacaGAAATCCATTCTGAAACAAATGCTCAAACGACCC
TCAAAAGTAAACTATTTACAACCGTTATTGAGTTACGAGGTTTTAACTCT
AAACTACTCTTTTAATTTTAATTGAATTTAATGAGGTTTGTATGTTTAAT
GAGACTATTTTtccatttgaaatattttataccaCATACATGACTTTGTT
GTGAAAACTGTTTACCACATTCATGACACAGAAAGGGTTTTTTTCTCCAG
TGTGTGTTCTCTAGTATAGTCCCTTAATACACGCTTGCGAAAAAGACTCG
CCACATCCCTAACATGGTTTGATTCTTTTGTGtactttctgactttttgt
gGCAAATCTTTCACTGCAATACAAAAACCTTTTCTCGCTTGTGAGTTTTA
AATGAGAAGCCAGGTTATATTTTTGCGTAAATGATCTACCACATTTTTCA
CACTGAAACTTAGTGGCATTACTATGTTTTTGTAAGAAATGCTTTTCAAG
GAACTCTTTTGTAGTATAACATACGCCACATTTAttacatttaaaatatt
tgcttGGTGAATCATTGGTTCGGCTCATCACATTTGCTGCTCTACTTCCA
GTAAATtgtttaccacattcttgacctTTTCCTGTATGGGATCTCAAGTG
AATGTTCAAGCCTGATTTGTAAGTAAaggatttaccacattcttcacatt
gAAAAGGTCTTTCTCCTGTGTGAGTTCTTAAATGGACATTCAAGTTATAT
TTTTGCGTAAAGTGTTTACCACAAACAGCACAATTTAGATTATTAATTAG
ACGGTGTTTTTGAACGAAATGTTGATCAAGGAACTCCTTTGATGTATAAC
AAGCACCACAGTCATTacactcaaaataattattgGAATTATCGCCTTCT
TTTATTCGTTCCTTTTCACTTTCCACAATCGAACTCGCGATTTTGGTTAA
ATAATCAGTATTTGACGATTCTTCTGCAGCaaaggttgaaatttcatcaa
attcaattttgataTCAATGGACGAATCAATTTGCAGACTTGCTGTCGTA
GCATTACCATCAATACTAACAAAATCATAATCCTTCTCCTCGATTTTGAC
TTTCACGGTGTCCAACTCATTCCCAGCGATATTTCTATTCTCAATATTGT
TTACATTCtcaatttcttcttcaaatttgAAGCAAATGGATTCAATATTT
TCGTGAAAAC

Coding sequence (CDS) from alignment at scaffold_256:19022..20281

>TCONS_00055684 ID=TCONS_00055684|Name=TCONS_00055684|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_256:19022..20281 (Clytia hemisphaerica)
CTAACATGGTTTGATTCTTTTGTGtactttctgactttttgtgGCAAATC
TTTCACTGCAATACAAAAACCTTTTCTCGCTTGTGAGTTTTAAATGAGAA
GCCAGGTTATATTTTTGCGTAAATGATCTACCACATTTTTCACACTGAAA
CTTAGTGGCATTACTATGTTTTTGTAAGAAATGCTTTTCAAGGAACTCTT
TTGTAGTATAACATACGCCACATTTAttacatttaaaatatttgcttGGT
GAATCATTGGTTCGGCTCATCACATTTGCTGCTCTACTTCCAGTAAATtg
tttaccacattcttgacctTTTCCTGTATGGGATCTCAAGTGAATGTTCA
AGCCTGATTTGTAAGTAAaggatttaccacattcttcacattgAAAAGGT
CTTTCTCCTGTGTGAGTTCTTAAATGGACATTCAAGTTATATTTTTGCGT
AAAGTGTTTACCACAAACAGCACAATTTAGATTATTAATTAGACGGTGTT
TTTGAACGAAATGTTGATCAAGGAACTCCTTTGATGTATAACAAGCACCA
CAGTCATTacactcaaaataattattgGAATTATCGCCTTCTTTTATTCG
TTCCTTTTCACTTTCCACAATCGAACTCGCGATTTTGGTTAAATAATCAG
TATTTGACGATTCTTCTGCAGCaaaggttgaaatttcatcaaattcaatt
ttgataTCAATGGACGAATCAATTTGCAGACTTGCTGTCGTAGCATTACC
ATCAATACTAACAAAATCATAATCCTTCTCCTCGATTTTGACTTTCACGG
TGTCCAACTCATTCCCAGCGATATTTCTATTCTCAATATTGTTTACATTC
tcaatttcttcttcaaatttgAAGCAAATGGATTCAATATTTTCGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035039XLOC_035039Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055684-proteinTCONS_00055684-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055684-exon-scaffold_256-1491911889:19022..20281TCONS_00055684-exon-scaffold_256-1491911889:19022..20281Clytia hemisphaericaexon
TCONS_00055684-exon-scaffold_256-1510915933:19022..20281TCONS_00055684-exon-scaffold_256-1510915933:19022..20281Clytia hemisphaericaexon
TCONS_00055684-exon-scaffold_256-1575043694:19022..20281TCONS_00055684-exon-scaffold_256-1575043694:19022..20281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:19022..20281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42767	3.61575	1.58112	1.33258	0.324404	0.524117	0.190246	0.420341	0.201225	0.415174	0.253908	0.17379	0.0718633	0.0233147	0.129485	0.0908232	0.0396401	0.198182	0.0358836	0.0473327	0.185102	0	2.92251	3.21213	0.996199	1.50636	0.272483	0.122303	1.61432	1.17165
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00055684 vs. Swiss-Prot (Human)
Match: ZN260 (Zinc finger protein 260 OS=Homo sapiens GN=ZNF260 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 7.906e-35
Identity = 91/260 (35.00%), Postives = 139/260 (53.46%), Query Frame = 3 
Query:  291 SEKERIKEGDNSNNYFECNDCGACYTSKEFLDQHFVQKHRLINNLNCAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSGLNIHLRSHTGKG----QECGKQFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKFQCEKCGRSFTQKYNLASHLKL-TSEKRF-------LYCSERFATKSQKVHKRIKP--C*GCGESFSQACIKGLY*RTHTGEKNPFCVMNVVNSFHNKVMYV 1028
            +E E+I  G+     FECN CG  ++ K++L +H    H       C+ CGK F+QK NL +H R HTGE+P++C+ CGK+F  KS L  H RSHTG+     +ECGK F+G        + +    K +KCN+CG  +  K++L KH    H+    ++C KCG++F++  +L  H+++ T +K +        +C     T   + H   KP  C  CG++FSQ     L+ R HTGEK P+       +F  K  ++
Sbjct:  152 TEHEKIHTGEKP---FECNQCGRAFSQKQYLIKH-QNIHTGKKPFKCSECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKSNLTEHEKIHIG-EKPYKCNECGTIFRQKQYLIKHH-NIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKVCGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEK-PYQCSECGKAFSQKSHHI 404

HSP 2 Score: 105.916 bits (263), Expect = 3.718e-25
Identity = 77/227 (33.92%), Postives = 123/227 (54.19%), Query Frame = 3 
Query:  336 FECNDCGACYTSKEFLDQHFVQKHRLINNLNCAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSGLNIHLRSHTG-KGQECGKQFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKFQCEKCGRSFTQKYNLASHLKLTSEKRFLYCSERFATKSQK----VHKRI----KP--C*GCGESFSQACIKGLY*RTHTGEKNPFC 983
            +ECN+C   ++ K+ L +H  + H    +  C  CGK  ++  +L +HLR+HTG++ ++C +CGK+F+ K     H + HTG K  EC K  +      +  + N + +K + C +CG  +  K +L +H  + H+    F+C +CGR+F+QK  L  H  + + K+   CSE     SQK    +H+RI    KP  C GCG++F Q      + R+HTGEK   C
Sbjct:   27 YECNECRKTFSLKQNLVEH-KKMHTGEKSHECTECGKVCSRVSSLTLHLRSHTGKKAYKCNKCGKAFSQKENFLSHQKHHTGEKPYECEK-VSIQMPTIIRHQKNHTGTKPYACKECGKAFNGKAYLTEH-EKIHTGEKPFECNQCGRAFSQKQYLIKHQNIHTGKKPFKCSECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTC 250

HSP 3 Score: 90.5077 bits (223), Expect = 9.699e-20
Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 3 
Query:  276 SSIVESEKERIKEGDNSNNYFECNDCGACYTSKEFLDQHFVQKHRLINNLNCAVCGKHFTQKYNLNVHLRTHTGERPFQCEECGKSFTYKSGLNIHLRSHTGKGQECGKQFTGSRAANVMSRTNDSPSKYFKCNKCGVCYTTKEFLEKHFLQKHSNATKFQCEKCGRSFTQKYNLASHLKL 818
            S++ E EK  I E       ++CN+CG  +  K++L +H    H       C  CGK F++  +L VH+R HTG++P++C+ CGK+F   S L +H+RSHTG+                         K + CN+CG  ++    L  H ++ H+    +QC +CG++F+QK +   H ++
Sbjct:  261 SNLTEHEKIHIGEKP-----YKCNECGTIFRQKQYLIKHH-NIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKVCGKAFCQSSSLTVHMRSHTGE-------------------------KPYGCNECGKAFSQFSTLALH-MRIHTGEKPYQCSECGKAFSQKSHHIRHQRI 409
The following BLAST results are available for this feature:
BLAST of TCONS_00055684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2607.906e-3535.00Zinc finger protein 260 OS=Homo sapiens GN=ZNF260 ... [more]
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