TCONS_00055685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055685
Unique NameTCONS_00055685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055685 ID=TCONS_00055685|Name=TCONS_00055685|organism=Clytia hemisphaerica|type=transcript|length=910bp
CCTTAATAAGACTTTCACTAAGAGATTCAGTTTAAAAAGGCATCTTGTAT
TACACACTGGTGAAAAACCTTTTAAGTGCGatgaatgtggtaaatgtttt
ccTTTTCAACACGAGCTAACACAGCATTCCATTAAACATAGTGGAATTAA
ACCTTTTAAATGCGAAGAATGTGATGAATCTTTTCAAAGCTACTATTTTC
TAAAGAATCATCTTATTAAGGTGCATAATGGAGGACAACCTTTTAATTGT
aaggaatgtggtaaatcttttccTTGTCAAAGTGCTTTAACACGGCATCT
TATGGTACACAGCGACATTAGACCATGTaaatgtgaagaatgtggtaaat
gttttcgGAGCAAGCAAAACCTAAAGGATCATCTTAGAATTCACACTGGT
GAAAAACCATTCAAgtgtgaagaatgtggtaaaagtTTTCGTCAAAGAAG
CAAATTAACACGACATTTAAATGTACACAGTGAAATTAAACCATataaat
gtcaagaatgtggtaaatgcttTGCAGAACAAAGAAGTTTAACCCGTCAT
ACAGAGGCTCTTTGTGGAGTTATGCCATTAaaatgtgaagaatgtggtag
ACGTTTCAAATATGTGGAAAGTCTAACAAAACATCAGAAAACTCATGAAG
CTAAGCCATGTCAACGTGAAAAGGTAGNGAGTCTTTTTGTGGAGTTATGC
CATTAaaatgtgaagaatgtggtagACGTTTCAAATATGTGGAAAGTCTA
ACAAAACATCAGAAAACTCATGAAGCTAAGCCATTTCAACGTGAAAAGGT
AGACTTAGAAAAATTGTTTGCATGGAAACAGAATTTTAATGACCATCAGG
ATAACAAACAAAGCAGTTAAAGAGGGgagaattaaaattgacgagttgGT
TAAACGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00055685-protein

>TCONS_00055685-protein ID=TCONS_00055685-protein|Name=TCONS_00055685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
LNKTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIK
PFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHL
MVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRS
KLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGR
RFKYVESLTKHQKTHEAKPCQREKVXSLFVELCH
Run BLAST on NCBI

transcript from alignment at scaffold_256:37178..38087

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055685 ID=TCONS_00055685|Name=TCONS_00055685|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at scaffold_256:37178..38087 (Clytia hemisphaerica)
CAGACGTTTAACcaactcgtcaattttaattctcCCCTCTTTAACTGCTT
TGTTTGTTATCCTGATGGTCATTAAAATTCTGTTTCCATGCAAACAATTT
TTCTAAGTCTACCTTTTCACGTTGAAATGGCTTAGCTTCATGAGTTTTCT
GATGTTTTGTTAGACTTTCCACATATTTGAAACGTctaccacattcttca
catttTAATGGCATAACTCCACAAAAAGACTCNCTACCTTTTCACGTTGA
CATGGCTTAGCTTCATGAGTTTTCTGATGTTTTGTTAGACTTTCCACATA
TTTGAAACGTctaccacattcttcacatttTAATGGCATAACTCCACAAA
GAGCCTCTGTATGACGGGTTAAACTTCTTTGTTCTGCAaagcatttacca
cattcttgacatttatATGGTTTAATTTCACTGTGTACATTTAAATGTCG
TGTTAATTTGCTTCTTTGACGAAAacttttaccacattcttcacacTTGA
ATGGTTTTTCACCAGTGTGAATTCTAAGATGATCCTTTAGGTTTTGCTTG
CTCcgaaaacatttaccacattcttcacatttACATGGTCTAATGTCGCT
GTGTACCATAAGATGCCGTGTTAAAGCACTTTGACAAggaaaagatttac
cacattccttACAATTAAAAGGTTGTCCTCCATTATGCACCTTAATAAGA
TGATTCTTTAGAAAATAGTAGCTTTGAAAAGATTCATCACATTCTTCGCA
TTTAAAAGGTTTAATTCCACTATGTTTAATGGAATGCTGTGTTAGCTCGT
GTTGAAAAggaaaacatttaccacattcatCGCACTTAAAAGGTTTTTCA
CCAGTGTGTAATACAAGATGCCTTTTTAAACTGAATCTCTTAGTGAAAGT
CTTATTAAGG

Coding sequence (CDS) from alignment at scaffold_256:37178..38087

>TCONS_00055685 ID=TCONS_00055685|Name=TCONS_00055685|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_256:37178..38087 (Clytia hemisphaerica)
tTAATGGCATAACTCCACAAAAAGACTCNCTACCTTTTCACGTTGACATG
GCTTAGCTTCATGAGTTTTCTGATGTTTTGTTAGACTTTCCACATATTTG
AAACGTctaccacattcttcacatttTAATGGCATAACTCCACAAAGAGC
CTCTGTATGACGGGTTAAACTTCTTTGTTCTGCAaagcatttaccacatt
cttgacatttatATGGTTTAATTTCACTGTGTACATTTAAATGTCGTGTT
AATTTGCTTCTTTGACGAAAacttttaccacattcttcacacTTGAATGG
TTTTTCACCAGTGTGAATTCTAAGATGATCCTTTAGGTTTTGCTTGCTCc
gaaaacatttaccacattcttcacatttACATGGTCTAATGTCGCTGTGT
ACCATAAGATGCCGTGTTAAAGCACTTTGACAAggaaaagatttaccaca
ttccttACAATTAAAAGGTTGTCCTCCATTATGCACCTTAATAAGATGAT
TCTTTAGAAAATAGTAGCTTTGAAAAGATTCATCACATTCTTCGCATTTA
AAAGGTTTAATTCCACTATGTTTAATGGAATGCTGTGTTAGCTCGTGTTG
AAAAggaaaacatttaccacattcatCGCACTTAAAAGGTTTTTCACCAG
TGTGTAATACAAGATGCCTTTTTAAACTGAATCTCTTAGTGAAAGTCTTA
TTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035040XLOC_035040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055685-proteinTCONS_00055685-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055685-exon-scaffold_256-1491911889:37178..38087TCONS_00055685-exon-scaffold_256-1491911889:37178..38087Clytia hemisphaericaexon
TCONS_00055685-exon-scaffold_256-1510915933:37178..38087TCONS_00055685-exon-scaffold_256-1510915933:37178..38087Clytia hemisphaericaexon
TCONS_00055685-exon-scaffold_256-1575043694:37178..38087TCONS_00055685-exon-scaffold_256-1575043694:37178..38087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_256supercontigscaffold_256:37178..38087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.58989	0.385684	0	0	0.0123127	0.00521969	0	0	0.194204	0	0.0846746	0	0	0	0.0113671	0.333377	0.0296003	0	0.101734	0.0389204	0	0	0	0.736631	0.7674	0	0.249221	0	0.166374
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00055685 vs. Swiss-Prot (Human)
Match: ZN708 (Zinc finger protein 708 OS=Homo sapiens GN=ZNF708 PE=1 SV=5)

HSP 1 Score: 215.312 bits (547), Expect = 5.590e-65
Identity = 117/243 (48.15%), Postives = 147/243 (60.49%), Query Frame = 2 
Query:    8 KTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGRRFKYVESLTKHQKTH-EAKPCQREKVXSLFVELCH*NVKNVVDVS 733
            K F K  + KRH + HTG+ PFKC ECGK F    +LTQH I H+G KP+KCEEC ++F+    L NH I +H G +P+ C+ECGK+F   S LTRH ++H+  +  KCEECGK F    NL  H  +HTGEKP+KCEECGK+F+Q S LT H  +H+  KPYKC ECGK F     LT H     G  P KCEECG+ F    +LTKH+  H E KP + E+    F    H     V+   
Sbjct:   83 KVFHKYSNAKRHKIRHTGKNPFKCKECGKSFCMLSQLTQHEIIHTGEKPYKCEECGKAFKKSSNLTNHKI-IHTGEKPYKCEECGKAFNQSSTLTRHKIIHTGEKLYKCEECGKAFNRSSNLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKPYKCGECGKAFTLSSHLTTHKRIHTGEKPYKCEECGKAFSVFSTLTKHKIIHTEEKPYKCEECGKAFNRSSHLTNHKVIHTG 324

HSP 2 Score: 207.608 bits (527), Expect = 3.690e-62
Identity = 103/214 (48.13%), Postives = 140/214 (65.42%), Query Frame = 2 
Query:    5 NKTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGRRFKYVESLTKHQKTH 646
             K F+   +L +H ++HT EKP+KC+ECGK F     LT H + H+G KP+KCEEC ++F     L  H + +H G +P+ C+ECGK+F   S LT+H ++H++ +P KCEECGK F    N  +H +IHTGEKP+KCEECGKSF   S LT H  +H+  KPYKC+ECGK F +  +L +H     G  P KCEECG+ F    +LTKH++ H
Sbjct:  278 GKAFSVFSTLTKHKIIHTEEKPYKCEECGKAFNRSSHLTNHKVIHTGEKPYKCEECGKAFTKSSTLTYHKV-IHTGKKPYKCEECGKAFSIFSILTKHKVIHTEDKPYKCEECGKTFNYSSNFTNHKKIHTGEKPYKCEECGKSFILSSHLTTHKIIHTGEKPYKCKECGKAFNQSSTLMKHKIIHTGEKPYKCEECGKAFNQSPNLTKHKRIH 490

HSP 3 Score: 205.682 bits (522), Expect = 2.583e-61
Identity = 107/244 (43.85%), Postives = 148/244 (60.66%), Query Frame = 2 
Query:    5 NKTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGRRFKYVESLTKHQKTHEA-KPCQREKVXSLFVELCH*NVKNVVDVS 733
             K F +  +L +H ++HTGEKP+KC+ECGK F     LT H   H+G KP+KC EC ++F     L  H  ++H G +P+ C+ECGK+F   S LT+H ++H++ +P KCEECGK F    +L +H  IHTGEKP+KCEECGK+F + S LT H  +H+  KPYKC+ECGK F+    LT+H        P KCEECG+ F Y  + T H+K H   KP + E+    F+   H     ++   
Sbjct:  194 GKAFNRSSNLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKPYKCGECGKAFTLSSHLTTHK-RIHTGEKPYKCEECGKAFSVFSTLTKHKIIHTEEKPYKCEECGKAFNRSSHLTNHKVIHTGEKPYKCEECGKAFTKSSTLTYHKVIHTGKKPYKCEECGKAFSIFSILTKHKVIHTEDKPYKCEECGKTFNYSSNFTNHKKIHTGEKPYKCEECGKSFILSSHLTTHKIIHTG 436

HSP 4 Score: 201.445 bits (511), Expect = 9.590e-60
Identity = 108/231 (46.75%), Postives = 143/231 (61.90%), Query Frame = 2 
Query:    5 NKTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGRRFKYVESLTKHQKTHEA-KPCQREKVXSLFVE 694
             K+F     L +H ++HTGEKP+KC+ECGK F     LT H I H+G KP+KCEEC ++F     L  H I +H G + + C+ECGK+F   S LT+H +VH+  +P KCEECGK F+   NL +H +IHTGEKP+KC ECGK+F   S LT H  +H+  KPYKC+ECGK F+   +LT+H        P KCEECG+ F     LT H+  H   KP + E+    F +
Sbjct:  110 GKSFCMLSQLTQHEIIHTGEKPYKCEECGKAFKKSSNLTNHKIIHTGEKPYKCEECGKAFNQSSTLTRHKI-IHTGEKLYKCEECGKAFNRSSNLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKPYKCGECGKAFTLSSHLTTHKRIHTGEKPYKCEECGKAFSVFSTLTKHKIIHTEEKPYKCEECGKAFNRSSHLTNHKVIHTGEKPYKCEECGKAFTK 339

HSP 5 Score: 181.8 bits (460), Expect = 1.684e-52
Identity = 91/195 (46.67%), Postives = 122/195 (62.56%), Query Frame = 2 
Query:    5 NKTFTKRFSLKRHLVLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCE 589
             K F +   L  H V+HTGEKP+KC+ECGK F     LT H + H+G KP+KCEEC ++F  +  L  H + +H   +P+ C+ECGK+F   S  T H  +H+  +P KCEECGK F    +L  H  IHTGEKP+KC+ECGK+F Q S L +H  +H+  KPYKC+ECGK F +  +LT+H        P KC+
Sbjct:  306 GKAFNRSSHLTNHKVIHTGEKPYKCEECGKAFTKSSTLTYHKVIHTGKKPYKCEECGKAFSIFSILTKHKV-IHTEDKPYKCEECGKTFNYSSNFTNHKKIHTGEKPYKCEECGKSFILSSHLTTHKIIHTGEKPYKCKECGKAFNQSSTLMKHKIIHTGEKPYKCEECGKAFNQSPNLTKHKRIHTKEKPYKCK 499

HSP 6 Score: 171.014 bits (432), Expect = 2.028e-48
Identity = 99/221 (44.80%), Postives = 129/221 (58.37%), Query Frame = 2 
Query:   47 VLHTGEKPFKCDECGKCFPFQHELTQHSIKHSGIKPFKCEECDESFQSYYFLKNHLIKVHNGGQPFNCKECGKSFPCQSALTRHLMVHSDIRPCKCEECGKCFRSKQNLKDHLRIHTGEKPFKCEECGKSFRQRSKLTRHLNVHSEIKPYKCQECGKCFAEQRSLTRHTEALCGVMPLKCEECGRRFKYVESLTKHQKTHEA-KPCQRE---KVXSLFVEL 697
            V  T  K  +CD+  K F       +H I+H+G  PFKC+EC +SF     L  H I +H G +P+ C+ECGK+F   S LT H ++H+  +P KCEECGK F     L  H  IHTGEK +KCEECGK+F + S LT+H  VH+  KPYKC+ECGK F +  +LT H +   G  P KC ECG+ F     LT H++ H   KP + E   K  S+F  L
Sbjct:   68 VTTTQSKIVQCDKYVKVFHKYSNAKRHKIRHTGKNPFKCKECGKSFCMLSQLTQHEI-IHTGEKPYKCEECGKAFKKSSNLTNHKIIHTGEKPYKCEECGKAFNQSSTLTRHKIIHTGEKLYKCEECGKAFNRSSNLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKPYKCGECGKAFTLSSHLTTHKRIHTGEKPYKCEECGKAFSVFSTL 287
The following BLAST results are available for this feature:
BLAST of TCONS_00055685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7085.590e-6548.15Zinc finger protein 708 OS=Homo sapiens GN=ZNF708 ... [more]
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