TCONS_00055809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055809
Unique NameTCONS_00055809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055809 ID=TCONS_00055809|Name=TCONS_00055809|organism=Clytia hemisphaerica|type=transcript|length=293bp
TGAAAATCTTAACATCATCCTAAAATCGACATGAAGCCAATGGACAATTG
TTTATTTATTCATTATTGAAACTATTCAAAATTtataatgtacttgaata
attGAAAAAGGAACCGATCTATTTAAACATGTCTGAAAAGAAACTATTAA
ACGCCGTCTTTCCTCCGCTGACTTCAATAATCATGAATTCTAATGCCGCG
CTGTGCTCGTCTGACACCAACGGGCTGGCAAATGCCTGTACCGCTCAAGC
GATTGGTACGAATAAATAAGATCCGGTCCACCGACCGATCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_26:31115..31407

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055809 ID=TCONS_00055809|Name=TCONS_00055809|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_26:31115..31407 (Clytia hemisphaerica)
GTTGATCGGTCGGTGGACCGGATCTTATTTATTCGTACCAATCGCTTGAG
CGGTACAGGCATTTGCCAGCCCGTTGGTGTCAGACGAGCACAGCGCGGCA
TTAGAATTCATGATTATTGAAGTCAGCGGAGGAAAGACGGCGTTTAATAG
TTTCTTTTCAGACATGTTTAAATAGATCGGTTCCTTTTTCaattattcaa
gtacattataAATTTTGAATAGTTTCAATAATGAATAAATAAACAATTGT
CCATTGGCTTCATGTCGATTTTAGGATGATGTTAAGATTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035134XLOC_035134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055809-exon-scaffold_26-1491911889:31115..31407TCONS_00055809-exon-scaffold_26-1491911889:31115..31407Clytia hemisphaericaexon
TCONS_00055809-exon-scaffold_26-1510915933:31115..31407TCONS_00055809-exon-scaffold_26-1510915933:31115..31407Clytia hemisphaericaexon
TCONS_00055809-exon-scaffold_26-1575043694:31115..31407TCONS_00055809-exon-scaffold_26-1575043694:31115..31407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:31115..31407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.79496	10.8194	2.18008	5.93824	0	0	0	0	0	0.949834	0.438335	0.30508	0.280063	0.290848	0.734201	0.769827	0.672277	0.665594	0	0	0.814294	2.05139	5.78899	2.85887	0	0	1.26015	0	4.77566	0.517924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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