TCONS_00055813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055813
Unique NameTCONS_00055813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055813 ID=TCONS_00055813|Name=TCONS_00055813|organism=Clytia hemisphaerica|type=transcript|length=365bp
AAAACATCAGTTCGCAGAATCAAATTGTTGCTTTCACTCAAATTATAGGC
TTCCAAAGCTTTCCCAGATgtgagaaatgaaatgaaactttcaataatat
cataattcaatccaaaacaataCATAAGCTCAGTTTCCATGTCAAAAACA
CAGCTGACTGCCCCCAAAATGTGAATGTTTTGCAAATACCACTTCTTcgg
ttaccatctttaattacgtcatattaAGATATCCCGGGgaaaaaaggcgg
tattgacttagacgcccaaaaagggcgtaaaaagagctttcatttGGTAT
GTCATGATGCTATGTTTAGAGCAGCCTTACGGAAATGAGGCCCTAGCAAC
GGATGCGATTTCCCG
Run BLAST on NCBI

transcript from alignment at scaffold_26:129295..129659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055813 ID=TCONS_00055813|Name=TCONS_00055813|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_26:129295..129659 (Clytia hemisphaerica)
CGGGAAATCGCATCCGTTGCTAGGGCCTCATTTCCGTAAGGCTGCTCTAA
ACATAGCATCATGACATACCaaatgaaagctctttttacgccctttttgg
gcgtctaagtcaataccgccttttttcCCCGGGATATCTtaatatgacgt
aattaaagatggtaaccgAAGAAGTGGTATTTGCAAAACATTCACATTTT
GGGGGCAGTCAGCTGTGTTTTTGACATGGAAACTGAGCTTATGtattgtt
ttggattgaattatgatattattgaaagtttcatttcatttctcacATCT
GGGAAAGCTTTGGAAGCCTATAATTTGAGTGAAAGCAACAATTTGATTCT
GCGAACTGATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035138XLOC_035138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055813-exon-scaffold_26-1491911889:129295..129659TCONS_00055813-exon-scaffold_26-1491911889:129295..129659Clytia hemisphaericaexon
TCONS_00055813-exon-scaffold_26-1510915933:129295..129659TCONS_00055813-exon-scaffold_26-1510915933:129295..129659Clytia hemisphaericaexon
TCONS_00055813-exon-scaffold_26-1575043694:129295..129659TCONS_00055813-exon-scaffold_26-1575043694:129295..129659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:129295..129659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.644293	1.72653	0	0	2.09897	0.64291	0.946017	0	0	0	1.92416	2.39681	0	0	0.562858	0	0.281837	0	0	0	0	1.0963	0	1.29133	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top