TCONS_00055819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055819
Unique NameTCONS_00055819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055819 ID=TCONS_00055819|Name=TCONS_00055819|organism=Clytia hemisphaerica|type=transcript|length=261bp
agaaaatatagaaaatattaataaaaatgaattcaaaaataCTAACTGGA
TTTCAAAATGGAATTGCTGGTGTTGTTGATAAGAAGTTGTTTGAATGTCC
AATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCCATGTGAACATC
TAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataaggaaattgaaaaa
gtcaaaagCAAAAGATTGGATGAAAAAGATGCAGAATTTCGATGTTCGAT
ATGTCAAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_260:52942..53659+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055819 ID=TCONS_00055819|Name=TCONS_00055819|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at scaffold_260:52942..53659+ (Clytia hemisphaerica)
agaaaatatagaaaatattaataaaaatgaattcaaaaataCTAACTGGA
TTTCAAAATGGAATTGCTGGTGTTGTTGATAAGAAGTTGTTTGAATGTCC
AATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCCATGTGAACATC
TAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataaggaaattgaaaaa
gtcaaaaggtttgttttttaattcggtAAAGGTTACACAGGTACATATCA
GCTCTattcattacacgtttttttttagaacaaactatataagaacaaaa
ggcttcgatggccaaaatattaagaacaagctaagaatattttaagtttt
ttgcggACTCGtataaaaatgggcaaaaatactcacagaatggtgaaaat
aagaatatttttaggcttaaaatataaaaatttaagaatatccaaaggct
tccaaatttttggatgttcttataaaaaaacgtgtattgatactagtctt
atttattttttcaaaatctttttattttcgaAGCCTGGACGCCAAAACTT
TCTTTATTGATCTTACATTAGGGCATAGGAGTGATGCAAGTTGAGCTAGT
CTAGTAGTAAGTTCGGcagtgaaattaaaatgaattctAAATTTTTCTCC
TCTTTGATATCTTAGCAAAAGATTGGATGAAAAAGATGCAGAATTTCGAT
GTTCGATATGTCAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035143XLOC_035143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055819-exon-scaffold_260-1491911889:52942..53149TCONS_00055819-exon-scaffold_260-1491911889:52942..53149Clytia hemisphaericaexon
TCONS_00055819-exon-scaffold_260-1510915933:52942..53149TCONS_00055819-exon-scaffold_260-1510915933:52942..53149Clytia hemisphaericaexon
TCONS_00055819-exon-scaffold_260-1575043694:52942..53149TCONS_00055819-exon-scaffold_260-1575043694:52942..53149Clytia hemisphaericaexon
TCONS_00055819-exon-scaffold_260-1491911889:53607..53659TCONS_00055819-exon-scaffold_260-1491911889:53607..53659Clytia hemisphaericaexon
TCONS_00055819-exon-scaffold_260-1510915933:53607..53659TCONS_00055819-exon-scaffold_260-1510915933:53607..53659Clytia hemisphaericaexon
TCONS_00055819-exon-scaffold_260-1575043694:53607..53659TCONS_00055819-exon-scaffold_260-1575043694:53607..53659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:52942..53659 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.689083	0.83135	0	0.544906	0	0	0	0	1.16482	0	0	0	0	0	0	0	0	0	0	0	1.23922	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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