TCONS_00055828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055828
Unique NameTCONS_00055828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055828 ID=TCONS_00055828|Name=TCONS_00055828|organism=Clytia hemisphaerica|type=transcript|length=482bp
CAGAAATCCAAGACAGATATTCCGCCTGGCCTTAGCGTCTCATTGCTCAT
TCTCAGGTAAGGGGAAGGCCTAAATCATAACAAAACATCATTTTACTGGG
ATCTGCTTCACAGTGGTTGTCCAAGTTTGTCCAATTTTTTCTTCACCCtc
ttttttatgtaaaaatccAGTATTTTTTGGCGTGTAACTGGTTCTTAAAG
ATGAGTGCTGAAAGCAAAGCTTTCTCCTGTACTATAGATGGCTGTAATCG
TACATACAAAACAAAGGGGAATCTCAAAACACACATGAAAATACATTCTG
GCGAATTCAGTTTTTATTGTGATTATGAAGGCTGTGAAAAGGGATTTGTA
TCAGCATACAGCTTCAAAGTTCATTACAGGCATCATACAGGTATTGTTCA
AAATATTGATTGCTCTATTTTTCATTCAGATAGTTTATTCCAGATAATGT
ACTGTGTTGTGACGCGTCATGTCACGTCGTCc
Run BLAST on NCBI

transcript from alignment at scaffold_260:12204..12685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055828 ID=TCONS_00055828|Name=TCONS_00055828|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_260:12204..12685 (Clytia hemisphaerica)
gGACGACGTGACATGACGCGTCACAACACAGTACATTATCTGGAATAAAC
TATCTGAATGAAAAATAGAGCAATCAATATTTTGAACAATACCTGTATGA
TGCCTGTAATGAACTTTGAAGCTGTATGCTGATACAAATCCCTTTTCACA
GCCTTCATAATCACAATAAAAACTGAATTCGCCAGAATGTATTTTCATGT
GTGTTTTGAGATTCCCCTTTGTTTTGTATGTACGATTACAGCCATCTATA
GTACAGGAGAAAGCTTTGCTTTCAGCACTCATCTTTAAGAACCAGTTACA
CGCCAAAAAATACTggatttttacataaaaaagaGGGTGAAGAAAAAATT
GGACAAACTTGGACAACCACTGTGAAGCAGATCCCAGTAAAATGATGTTT
TGTTATGATTTAGGCCTTCCCCTTACCTGAGAATGAGCAATGAGACGCTA
AGGCCAGGCGGAATATCTGTCTTGGATTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035148XLOC_035148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055828-exon-scaffold_260-1491911889:12204..12685TCONS_00055828-exon-scaffold_260-1491911889:12204..12685Clytia hemisphaericaexon
TCONS_00055828-exon-scaffold_260-1510915933:12204..12685TCONS_00055828-exon-scaffold_260-1510915933:12204..12685Clytia hemisphaericaexon
TCONS_00055828-exon-scaffold_260-1575043694:12204..12685TCONS_00055828-exon-scaffold_260-1575043694:12204..12685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_260supercontigscaffold_260:12204..12685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.795	12.4245	3.52783	1.86267	2.20593	1.55156	1.95455	1.66269	0.924702	1.93047	1.52412	1.06306	2.55446	3.71978	2.77551	2.77647	2.98807	2.96958	1.74974	1.99729	3.36638	2.52484	16.442	15.5193	2.10164	2.68977	0.982934	2.70383	10.503	10.9713
Blast
[Close]
BLAST of TCONS_00055828 vs. Swiss-Prot (Human)
Match: MTF1 (Metal regulatory transcription factor 1 OS=Homo sapiens GN=MTF1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.275e-19
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3 
Query:  210 ESKAFSCTIDGCNRTYKTKGNLKTHMKIHSGEFSFYCDYEGCEKGFVSAYSFKVHYRHHTGIVQNIDCSIFHSDSLFQIMY 452
            E K + CT +GC RTY T GNL+TH K H GE++F C+ EGC K F+++YS ++H R HT   +  +C +   +  F  +Y
Sbjct:  136 EVKRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYSLRIHVRVHTK-EKPFECDVQGCEKAFNTLY 215
The following BLAST results are available for this feature:
BLAST of TCONS_00055828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTF11.275e-1943.21Metal regulatory transcription factor 1 OS=Homo sa... [more]
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